Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,624,949 |
C→T |
E724K (GAA→AAA) |
yhiH ← |
putative ATP‑binding component of a transport system, fragment 1 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,624,949 | 0 | C | T | 86.2%
| 846.9
/ 83.9
| 296 | E724K (GAA→AAA) | yhiH | putative ATP‑binding component of a transport system, fragment 1 |
| Reads supporting (aligned to +/- strand): ref base C (21/20); new base T (118/137); total (139/157) |
| Fisher's exact test for biased strand distribution p-value = 6.15e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.72e-01 |
Only 100 of 314 total aligned reads displayed.
GCGCGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAC > NC_000913/3624859‑3625039
|
gATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGcac > 2:668527/1‑93 (MQ=255)
aTGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGcacc < 1:2900370/93‑1 (MQ=255)
gTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGcaccac < 2:3804274/93‑1 (MQ=255)
gTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGcaccac > 2:4974384/1‑93 (MQ=255)
aTGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGc < 1:4857868/93‑1 (MQ=255)
tGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCt > 2:2597643/1‑93 (MQ=255)
gCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTaa > 1:6121104/1‑93 (MQ=255)
gCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTaa < 1:2284442/93‑1 (MQ=255)
cAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAg < 2:5756319/93‑1 (MQ=255)
cAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAg < 2:1310631/93‑1 (MQ=255)
aaCTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAgg > 1:999648/1‑93 (MQ=255)
aaCTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAgg > 1:2968646/1‑93 (MQ=255)
aCTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAggg > 2:3226662/1‑93 (MQ=255)
aCTGTTTACCAAGCAAAAATTCACTACGCGTGGGGGGGGTCACGTAACGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAggg > 2:2150029/1‑93 (MQ=255)
cTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGgc > 2:5658472/1‑93 (MQ=255)
cTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGgc > 2:4696512/1‑93 (MQ=255)
gTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGgcgc < 2:3124014/93‑1 (MQ=255)
tttACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCt < 1:2452286/93‑1 (MQ=255)
tttACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCt > 1:4207316/1‑93 (MQ=255)
ttACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCtt > 2:4879127/1‑93 (MQ=255)
tACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTa < 1:5355617/93‑1 (MQ=255)
ccAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGc > 1:4070493/1‑93 (MQ=255)
ccAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGc > 2:2007280/1‑93 (MQ=255)
cAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCa < 2:6827341/93‑1 (MQ=255)
cAAGCAAAAATTCACTACGCGTGGTGGGGGTAACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCa > 1:7465469/1‑93 (MQ=255)
aaGCGAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCAt > 1:675902/1‑93 (MQ=255)
aaGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCAt > 2:5313601/1‑93 (MQ=255)
aGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGGACCACGCTAAGGGCGCTTAGCAtt > 1:6945347/1‑93 (MQ=255)
aGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCAtt < 2:3579269/93‑1 (MQ=255)
cAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGa < 2:6000054/93‑1 (MQ=255)
cAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGa < 1:6896487/93‑1 (MQ=255)
aaaaaTTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGAc > 2:4636361/1‑93 (MQ=255)
aaaaaTTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGAc < 2:3008733/93‑1 (MQ=255)
aaaaaTTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGAc > 2:1241125/1‑93 (MQ=255)
aaaaTTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACg < 2:4147697/93‑1 (MQ=255)
aaaaTTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACg > 1:4372464/1‑93 (MQ=255)
aaaTTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACgg < 1:1004788/93‑1 (MQ=255)
ttCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGat > 2:1674585/1‑93 (MQ=255)
aCTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGaccat > 1:3189490/1‑93 (MQ=255)
aCTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGaccat < 1:3440323/93‑1 (MQ=255)
aCTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGaccat > 1:5206831/1‑93 (MQ=255)
aCGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGaccatcat < 1:7305409/93‑1 (MQ=255)
gcgTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGAccatcatca < 2:3878597/93‑1 (MQ=255)
gcgTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGAccatcatca < 2:740084/93‑1 (MQ=255)
tggtggGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATcagca > 1:3939388/1‑93 (MQ=255)
tggtggGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATcagca < 1:1530203/93‑1 (MQ=255)
ggtggGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATcagcag < 2:185145/93‑1 (MQ=255)
tggGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGaa < 1:3550838/93‑1 (MQ=255)
gggggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAg < 2:7137592/93‑1 (MQ=255)
gggggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAg < 2:6304383/93‑1 (MQ=255)
gggggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAg < 1:2591708/93‑1 (MQ=255)
ggggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGc > 1:6376236/1‑93 (MQ=255)
gggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCg < 1:3903468/93‑1 (MQ=255)
gggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCg < 1:5596278/93‑1 (MQ=255)
ggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCgg > 1:2861637/1‑93 (MQ=255)
ggTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCgg < 2:4491504/93‑1 (MQ=255)
gTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCggg < 1:1357480/93‑1 (MQ=255)
cACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGAt < 2:2784016/93‑1 (MQ=255)
aCGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATc > 2:3343908/1‑93 (MQ=255)
aCGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATc > 1:5784159/1‑93 (MQ=255)
gTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAc < 1:3752743/93‑1 (MQ=255)
gTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAc < 2:4760760/93‑1 (MQ=255)
gTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAc < 2:5059533/93‑1 (MQ=255)
gTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAc < 2:5181466/93‑1 (MQ=255)
tAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAcc > 1:4642307/1‑93 (MQ=255)
tAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAcc < 1:5266512/93‑1 (MQ=255)
tAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCAcc > 1:5084307/1‑93 (MQ=255)
aaGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgc < 2:2336859/93‑1 (MQ=255)
aaGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgc < 2:6508565/93‑1 (MQ=255)
aaGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgc < 1:7069732/93‑1 (MQ=255)
aaGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCAccgc > 1:6789263/1‑93 (MQ=255)
aaGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCAccgc < 1:5713485/93‑1 (MQ=255)
aGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAccgcc > 1:1987963/1‑93 (MQ=255)
ggTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCAccgccg < 1:492329/93‑1 (MQ=255)
gTTGATAATCGACCAAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCgg > 2:2276105/1‑93 (MQ=255)
ttGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGa > 2:77986/1‑93 (MQ=255)
tGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGaa < 1:4552550/93‑1 (MQ=255)
aTAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACa > 2:3914577/1‑93 (MQ=255)
tAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACaa > 1:837353/1‑93 (MQ=255)
aTCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATc < 1:1685915/93‑1 (MQ=255)
tCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCg < 1:2111605/93‑1 (MQ=255)
cGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGc < 1:1773413/93‑1 (MQ=255)
gACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCt < 2:42435/93‑1 (MQ=255)
gACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCt < 2:4077169/93‑1 (MQ=255)
ccAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGc > 1:5450848/1‑93 (MQ=255)
cAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCa > 1:3838911/1‑93 (MQ=255)
cAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCa > 2:5525217/1‑93 (MQ=255)
cAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCa < 2:6570408/93‑1 (MQ=255)
aaGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAg > 1:6164170/1‑93 (MQ=255)
aaGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAg > 2:6866155/1‑93 (MQ=255)
ctctTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCt > 2:3285637/1‑93 (MQ=255)
ctctTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCt > 2:4364523/1‑93 (MQ=255)
tctTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCtt > 2:1713039/1‑93 (MQ=255)
ttttttCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCtttt > 1:1079508/1‑93 (MQ=255)
ttttttCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCtttt < 2:5829777/93‑1 (MQ=255)
ttttTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCttttt < 2:3556180/93‑1 (MQ=255)
ttttCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTa < 2:7011318/93‑1 (MQ=255)
ttttCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTa < 2:4837678/93‑1 (MQ=255)
tttCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTa < 1:3022627/93‑1 (MQ=255)
ttCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAc < 1:6034903/93‑1 (MQ=255)
|
GCGCGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAC > NC_000913/3624859‑3625039
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCAGCGCGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACG > NC_000913/3624856‑3625040
|
CCAGCGCGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTT < SRR4302542.6880730/94‑1 (MQ=60)
CAGCGCGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTC < SRR4302542.1588886/94‑1 (MQ=60)
AGCGCGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCC > SRR4302542.5437966/1‑94 (MQ=60)
AGCGCGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCC < SRR4302542.4537143/94‑1 (MQ=60)
CGCGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGC > SRR4302542.2723422/1‑94 (MQ=60)
CGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCAC > SRR4302542.6846091/1‑94 (MQ=60)
CGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCAC < SRR4302542.7159564/94‑1 (MQ=60)
ATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCA < SRR4302542.3984008/94‑1 (MQ=60)
ATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCA > SRR4302542.5328377/1‑94 (MQ=60)
ATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCA < SRR4302542.2928209/94‑1 (MQ=60)
ATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCA > SRR4302542.2966072/1‑94 (MQ=60)
TGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCAC < SRR4302542.2919072/94‑1 (MQ=60)
GTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACG < SRR4302542.6876028/94‑1 (MQ=60)
TATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGC > SRR4302542.1668320/1‑94 (MQ=60)
ATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCT < SRR4302542.4905182/94‑1 (MQ=60)
ATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCT > SRR4302542.6126740/1‑94 (MQ=60)
ATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCT < SRR4302542.5311210/94‑1 (MQ=60)
ATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCT < SRR4302542.3136065/94‑1 (MQ=60)
TGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTA > SRR4302542.5255276/1‑94 (MQ=60)
GGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAA > SRR4302542.6180328/1‑94 (MQ=60)
GGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAA < SRR4302542.520564/94‑1 (MQ=60)
GCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAG < SRR4302542.3025103/94‑1 (MQ=60)
GCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAG < SRR4302542.2304075/94‑1 (MQ=60)
CAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGG > SRR4302542.2997087/1‑94 (MQ=60)
CAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGG > SRR4302542.1008252/1‑94 (MQ=60)
CAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGG > SRR4302542.1057963/1‑94 (MQ=60)
AACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGG < SRR4302542.6614608/94‑1 (MQ=60)
AACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGGCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGG > SRR4302542.2895904/1‑94 (MQ=60)
ACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGC > SRR4302542.5869639/1‑94 (MQ=60)
ACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGC > SRR4302542.2018364/1‑94 (MQ=60)
GTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCT > SRR4302542.5616925/1‑94 (MQ=60)
GTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCT > SRR4302542.3946981/1‑94 (MQ=60)
GTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCT > SRR4302542.4248794/1‑94 (MQ=60)
TTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTT < SRR4302542.2476134/94‑1 (MQ=60)
TTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTA < SRR4302542.6978965/94‑1 (MQ=60)
TACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAG < SRR4302542.5407670/94‑1 (MQ=60)
TACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAG > SRR4302542.824725/1‑94 (MQ=60)
TACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAG < SRR4302542.4945452/94‑1 (MQ=60)
ACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGC > SRR4302542.4110633/1‑94 (MQ=60)
CCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATGATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCA < SRR4302542.460577/94‑1 (MQ=60)
CCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCA > SRR4302542.1799313/1‑94 (MQ=60)
CCAAGCAAAAATTCACTACGCGTGGTGGGGGTAACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCA > SRR4302542.7538610/1‑94 (MQ=60)
CAAGCGAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCAT > SRR4302542.681737/1‑94 (MQ=60)
CAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCAT < SRR4302542.5258426/94‑1 (MQ=60)
AAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGGACCACGCTAAGGGCGCTTAGCATT > SRR4302542.7013586/1‑94 (MQ=60)
AGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTG < SRR4302542.1175485/94‑1 (MQ=60)
AGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTG < SRR4302542.5928088/94‑1 (MQ=60)
AGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTCTTTCCGCACCACGCTAAGGGCGCTTAGCATTG < SRR4302542.4530179/94‑1 (MQ=60)
GAAAAAATCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAAACGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGAC < SRR4302542.4130919/94‑1 (MQ=60)
CAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGAC > SRR4302542.4324363/1‑94 (MQ=60)
CAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGAC < SRR4302542.4065772/94‑1 (MQ=60)
CAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGAC < SRR4302542.6964207/94‑1 (MQ=60)
AAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACG > SRR4302542.3424549/1‑94 (MQ=60)
AAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACG > SRR4302542.4415384/1‑94 (MQ=60)
AAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGG < SRR4302542.1013441/94‑1 (MQ=60)
AAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGG > SRR4302542.2712570/1‑94 (MQ=60)
AAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGG < SRR4302542.1503602/94‑1 (MQ=60)
AAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGG > SRR4302542.5833923/1‑94 (MQ=60)
ATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGAC > SRR4302542.4073811/1‑94 (MQ=60)
ATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGAC > SRR4302542.7246701/1‑94 (MQ=60)
TTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACC > SRR4302542.5002967/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCAT > SRR4302542.5438114/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT < SRR4302542.4657573/94‑1 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT > SRR4302542.3219699/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT > SRR4302542.5257468/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT > SRR4302542.3566141/1‑94 (MQ=60)
CACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCAT < SRR4302542.7112489/94‑1 (MQ=60)
ACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATC < SRR4302542.971165/94‑1 (MQ=60)
ACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATC < SRR4302542.3472530/94‑1 (MQ=60)
ACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATC < SRR4302542.7376975/94‑1 (MQ=60)
ACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATC < SRR4302542.5057425/94‑1 (MQ=60)
CGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGC < SRR4302542.2500059/94‑1 (MQ=60)
GTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCA > SRR4302542.3978297/1‑94 (MQ=60)
GTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCA < SRR4302542.3162569/94‑1 (MQ=60)
GTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCA < SRR4302542.2513255/94‑1 (MQ=60)
TGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAG < SRR4302542.1543416/94‑1 (MQ=60)
TGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAG < SRR4302542.7020592/94‑1 (MQ=60)
GGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGA < SRR4302542.4878631/94‑1 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAG > SRR4302542.6194594/1‑94 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAG < SRR4302542.7484452/94‑1 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAG > SRR4302542.5805857/1‑94 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAG > SRR4302542.6880161/1‑94 (MQ=60)
TGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAG < SRR4302542.3584031/94‑1 (MQ=60)
GGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGC < SRR4302542.3803378/94‑1 (MQ=60)
GGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGC > SRR4302542.6439018/1‑94 (MQ=60)
GGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGC < SRR4302542.2616806/94‑1 (MQ=60)
GGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGG < SRR4302542.5650656/94‑1 (MQ=60)
GGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGG > SRR4302542.2889126/1‑94 (MQ=60)
GGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGG < SRR4302542.3941999/94‑1 (MQ=60)
GGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGG < SRR4302542.2184801/94‑1 (MQ=60)
GGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGG > SRR4302542.2371755/1‑94 (MQ=60)
GTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGA < SRR4302542.1369207/94‑1 (MQ=60)
TCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGAT < SRR4302542.4230311/94‑1 (MQ=60)
TCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGAT < SRR4302542.7424253/94‑1 (MQ=60)
CACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATC > SRR4302542.5840321/1‑94 (MQ=60)
CGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAC < SRR4302542.1026200/94‑1 (MQ=60)
CGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAC < SRR4302542.5749646/94‑1 (MQ=60)
CGTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCAC > SRR4302542.6863919/1‑94 (MQ=60)
GTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACC < SRR4302542.3789870/94‑1 (MQ=60)
GTAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACC > SRR4302542.4687705/1‑94 (MQ=60)
GTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACC > SRR4302542.5133716/1‑94 (MQ=60)
TAAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCG < SRR4302542.5317692/94‑1 (MQ=60)
AAAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGC > SRR4302542.4699551/1‑94 (MQ=60)
AAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGC > SRR4302542.6856037/1‑94 (MQ=60)
AAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCC < SRR4302542.7139120/94‑1 (MQ=60)
AAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCC > SRR4302542.2005112/1‑94 (MQ=60)
AAGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCC > SRR4302542.6982090/1‑94 (MQ=60)
AAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCC < SRR4302542.5768941/94‑1 (MQ=60)
AGGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCG > SRR4302542.5339172/1‑94 (MQ=60)
GGTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGG < SRR4302542.496575/94‑1 (MQ=60)
GTTGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGA > SRR4302542.6344974/1‑94 (MQ=60)
TGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAAC < SRR4302542.4597099/94‑1 (MQ=60)
TGATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAAC < SRR4302542.1656315/94‑1 (MQ=60)
ATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAA > SRR4302542.844588/1‑94 (MQ=60)
ATAATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAA > SRR4302542.3017146/1‑94 (MQ=60)
AATCGACCCAAGCTCTTTTTTCCGCACCGCGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATC > SRR4302542.5693817/1‑94 (MQ=60)
AATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATC > SRR4302542.3793715/1‑94 (MQ=60)
AATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATC < SRR4302542.6829976/94‑1 (MQ=60)
ATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCG < SRR4302542.316661/94‑1 (MQ=60)
ATCGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCG < SRR4302542.1700510/94‑1 (MQ=60)
ATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCG > SRR4302542.1359299/1‑94 (MQ=60)
TCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGC < SRR4302542.2129832/94‑1 (MQ=60)
CGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCT < SRR4302542.5650191/94‑1 (MQ=60)
CGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCT < SRR4302542.1706702/94‑1 (MQ=60)
CGACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCT < SRR4302542.1788788/94‑1 (MQ=60)
GACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTG < SRR4302542.873177/94‑1 (MQ=60)
ACCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGG < SRR4302542.2959058/94‑1 (MQ=60)
ACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGG > SRR4302542.6334292/1‑94 (MQ=60)
CCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGC > SRR4302542.5503802/1‑94 (MQ=60)
CCCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGC > SRR4302542.2151376/1‑94 (MQ=60)
CCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGC > SRR4302542.3747346/1‑94 (MQ=60)
CCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCA > SRR4302542.3746999/1‑94 (MQ=60)
CCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCA > SRR4302542.3876871/1‑94 (MQ=60)
CCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCA > SRR4302542.6106253/1‑94 (MQ=60)
CCAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCA > SRR4302542.3280710/1‑94 (MQ=60)
CAAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAG > SRR4302542.6223881/1‑94 (MQ=60)
CAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAG > SRR4302542.6193065/1‑94 (MQ=60)
AAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGG > SRR4302542.2350190/1‑94 (MQ=60)
AAGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGG < SRR4302542.2054251/94‑1 (MQ=60)
AGCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGC < SRR4302542.654393/94‑1 (MQ=60)
GCTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCT > SRR4302542.830589/1‑94 (MQ=60)
CTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTT < SRR4302542.5096095/94‑1 (MQ=60)
CTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTT > SRR4302542.4262816/1‑94 (MQ=60)
CTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTT > SRR4302542.4941304/1‑94 (MQ=60)
CTCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTT > SRR4302542.4590151/1‑94 (MQ=60)
TCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTT > SRR4302542.1901274/1‑94 (MQ=60)
TCTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTT > SRR4302542.3975631/1‑94 (MQ=60)
TCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTT > SRR4302542.3879245/1‑94 (MQ=60)
CTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTT > SRR4302542.1516751/1‑94 (MQ=60)
CTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTT > SRR4302542.1088776/1‑94 (MQ=60)
CTTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTT > SRR4302542.3915708/1‑94 (MQ=60)
TTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTT < SRR4302542.2198878/94‑1 (MQ=60)
TTTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTT < SRR4302542.5770028/94‑1 (MQ=60)
TTTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTA < SRR4302542.1706567/94‑1 (MQ=60)
TTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAC > SRR4302542.377015/1‑94 (MQ=60)
TTTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAC < SRR4302542.3497052/94‑1 (MQ=60)
TTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTAC < SRR4302542.3051485/94‑1 (MQ=60)
TTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACG < SRR4302542.3465485/94‑1 (MQ=60)
TTTCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGACCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACG < SRR4302542.3691602/94‑1 (MQ=60)
TTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACG < SRR4302542.6093326/94‑1 (MQ=60)
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CCAGCGCGATGTATGGCAACTGTTTACCAAGCAAAAATTCACTACGCGTGGTGGGGGTCACGTAAAGGTTGATAATCGACCCAAGCTCTTTTTCCCGCACCACGCTAAGGGCGCTTAGCATTGACGGGATCATCATCAGCAGAAGCGGGATCACCGCCGGAACAATCGCTGGCAGGCTTTTTACG > NC_000913/3624856‑3625040
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
