Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,689,910	C→T	T109T (ACG→ACA)	yhjN ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,689,910	0	C	T	84.6%	825.3 / 97.4	299	T109T (ACG→ACA)	yhjN	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (23/23); new base T (135/118); total (158/141)
Fisher's exact test for biased strand distribution p-value = 7.49e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.01e-01

Only 100 of 299 total aligned reads displayed.

CCATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTT  >  NC_000913/3689819‑3690001

ccATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCg                                                                                            >  2:7365168/1‑93 (MQ=255)

 cATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGt                                                                                           >  2:922615/1‑93 (MQ=255)

 cATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGt                                                                                           >  1:1646770/1‑93 (MQ=255)

 cATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGt                                                                                           <  2:6266997/93‑1 (MQ=255)

  aTCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTc                                                                                          <  2:139866/93‑1 (MQ=255)

    cAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTcac                                                                                        >  1:7420872/1‑93 (MQ=255)

    cAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTcac                                                                                        <  1:2736723/93‑1 (MQ=255)

    cAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTcac                                                                                        <  1:4646767/93‑1 (MQ=255)

     aGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTcacc                                                                                       <  1:3680444/93‑1 (MQ=255)

      gTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTcacca                                                                                      >  1:4023372/1‑93 (MQ=255)

        tcatcaTTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACt                                                                                    >  2:1523402/1‑93 (MQ=255)

          atcatTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTc                                                                                  >  1:3766082/1‑93 (MQ=255)

          atcatTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTc                                                                                  >  2:4798995/1‑93 (MQ=255)

          atcatTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTc                                                                                  <  2:3923297/93‑1 (MQ=255)

           tcatTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCa                                                                                 <  1:3555520/93‑1 (MQ=255)

            catTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTAAGCATCGCCTTTGTCACCACTTCAt                                                                                <  2:5396696/93‑1 (MQ=255)

              ttGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCg                                                                              >  2:2734379/1‑93 (MQ=255)

              ttGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCg                                                                              >  2:2536269/1‑93 (MQ=255)

               tGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGc                                                                             >  1:1776417/1‑93 (MQ=255)

               tGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGc                                                                             <  1:2002820/93‑1 (MQ=255)

                gagaTAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCt                                                                            >  1:7330922/1‑93 (MQ=255)

                gagaTAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCt                                                                            >  1:3402475/1‑93 (MQ=255)

                gagaTAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCt                                                                            <  1:6637985/93‑1 (MQ=255)

                  gaTAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTgc                                                                          >  2:1975472/1‑93 (MQ=255)

                  gaTAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTgc                                                                          <  2:4040395/93‑1 (MQ=255)

                   aTAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTgcg                                                                         >  2:3555509/1‑93 (MQ=255)

                    tAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTgcgc                                                                        >  2:4111176/1‑93 (MQ=255)

                     acaCCTTTCACTGCGCCTGGACAGGAAGTACCGATGGCGCTGGGGTCTCTTCGAGGTTGAGCCTCGCCTTCGTCACCCCTTCCTCTCTGCTCa                                                                       >  1:1873133/3‑93 (MQ=255)

                     aaaCCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCa                                                                       <  2:6042022/93‑1 (MQ=255)

                     aaaCCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCa                                                                       <  1:2982995/93‑1 (MQ=255)

                      aaCCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCAt                                                                      <  1:7383384/93‑1 (MQ=255)

                       aCCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATa                                                                     <  1:5930521/93‑1 (MQ=255)

                        ccTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATAc                                                                    >  1:4454914/1‑93 (MQ=255)

                         cTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATAcc                                                                   >  2:7334938/1‑93 (MQ=255)

                         cTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATAcc                                                                   <  2:7011615/93‑1 (MQ=255)

                           ttAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCaa                                                                 <  2:7505477/93‑1 (MQ=255)

                               cTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTc                                                             <  1:6395617/93‑1 (MQ=255)

                               cTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTc                                                             >  1:2483644/1‑93 (MQ=255)

                               cTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCCCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTc                                                             <  1:2361966/93‑1 (MQ=255)

                                tGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCa                                                            >  2:5550681/1‑93 (MQ=255)

                                tGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCa                                                            >  2:2874536/1‑93 (MQ=255)

                                tGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCa                                                            >  1:4836432/1‑93 (MQ=255)

                                 gCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCaa                                                           <  1:4318132/93‑1 (MQ=255)

                                 gCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCaa                                                           <  2:6724243/93‑1 (MQ=255)

                                 gCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCaa                                                           <  2:215329/93‑1 (MQ=255)

                                  cGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAAt                                                          <  2:6958857/93‑1 (MQ=255)

                                      tGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAAtgctg                                                      >  1:4724055/1‑93 (MQ=255)

                                      tGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAAtgctg                                                      >  2:5247595/1‑93 (MQ=255)

                                          cAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGt                                                  <  1:3424777/93‑1 (MQ=255)

                                          cAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGt                                                  <  2:2256539/93‑1 (MQ=255)

                                           aGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGtt                                                 <  1:5825164/93‑1 (MQ=255)

                                           aGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGtt                                                 <  1:1481540/93‑1 (MQ=255)

                                            ggCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTc                                                >  2:4192135/1‑93 (MQ=255)

                                                 tAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGtt                                           >  1:2679839/1‑93 (MQ=255)

                                                 tAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGtt                                           >  1:6137769/1‑93 (MQ=255)

                                                 tAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGtt                                           <  2:4976190/93‑1 (MQ=255)

                                                   aCGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTaa                                         >  1:3918165/1‑93 (MQ=255)

                                                   aCGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTaa                                         >  1:5660012/1‑93 (MQ=255)

                                                   aCGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTaa                                         >  1:506689/1‑93 (MQ=255)

                                                    cgatggcgatggGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAAt                                        <  2:6157252/93‑1 (MQ=255)

                                                      atggcgatggGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGc                                      <  2:7146506/93‑1 (MQ=255)

                                                      atggcgatggGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGc                                      <  2:312119/93‑1 (MQ=255)

                                                       tggcgatggGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGcc                                     <  2:2045249/93‑1 (MQ=255)

                                                       tggcgatggGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGcc                                     <  2:647063/93‑1 (MQ=255)

                                                       tggcgatggGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGcc                                     >  1:5019318/1‑93 (MQ=255)

                                                         gcgatggGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCAc                                   <  2:1183423/93‑1 (MQ=255)

                                                         gcgatggGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCAc                                   <  1:2604535/93‑1 (MQ=255)

                                                           gatggGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGt                                 >  1:2845449/1‑93 (MQ=255)

                                                              ggggTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGc                              <  2:1627718/93‑1 (MQ=255)

                                                              ggggTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGc                              <  1:2103328/93‑1 (MQ=255)

                                                              ggggTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGc                              <  1:1063928/93‑1 (MQ=255)

                                                               gggTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCa                             >  1:5454519/1‑93 (MQ=255)

                                                                ggTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCAc                            <  2:6575880/93‑1 (MQ=255)

                                                                ggTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCAc                            >  1:7105187/1‑93 (MQ=255)

                                                                  tgtATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCa                          >  1:2821512/1‑93 (MQ=255)

                                                                     aTTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCAtgc                       <  2:5629435/93‑1 (MQ=255)

                                                                     aTTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCAtgc                       >  2:3610435/1‑93 (MQ=255)

                                                                     aTTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCAtgc                       <  2:598137/93‑1 (MQ=255)

                                                                      ttCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCAtgct                      >  1:98485/1‑93 (MQ=255)

                                                                      ttCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCAtgct                      <  1:3139889/93‑1 (MQ=255)

                                                                      ttCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCAtgct                      >  1:649922/1‑93 (MQ=255)

                                                                         gAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGcc                   <  2:4703245/93‑1 (MQ=255)

                                                                         gAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGcc                   <  2:3704321/93‑1 (MQ=255)

                                                                         gAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGcc                   <  1:853301/93‑1 (MQ=255)

                                                                           ggTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCcg                 >  1:7300707/1‑93 (MQ=255)

                                                                            gTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCcgg                >  2:5507487/1‑93 (MQ=255)

                                                                             ttGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCcggc               <  2:4621036/93‑1 (MQ=255)

                                                                              tGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCcggcg              >  2:4527895/1‑93 (MQ=255)

                                                                                aGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCcggcggc            >  2:5710306/1‑93 (MQ=255)

                                                                                  cATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCcggcggcgg          <  2:258692/93‑1 (MQ=255)

                                                                                  cATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCcggcggcgg          <  1:5263926/93‑1 (MQ=255)

                                                                                   aTCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGt         <  2:1674578/93‑1 (MQ=255)

                                                                                    tCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTg        >  1:7518240/1‑93 (MQ=255)

                                                                                     cGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGc       <  2:1315316/93‑1 (MQ=255)

                                                                                        cTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAt    >  2:1809992/1‑93 (MQ=255)

                                                                                        cTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAt    >  1:6762212/1‑93 (MQ=255)

                                                                                        cTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAt    >  2:7056596/1‑93 (MQ=255)

                                                                                         ttCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAtt   >  1:3080083/1‑93 (MQ=255)

                                                                                         ttCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAtt   >  1:1171129/1‑93 (MQ=255)

                                                                                          tCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAttt  >  1:6341266/1‑93 (MQ=255)

CCATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTT  >  NC_000913/3689819‑3690001

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGC  >  NC_000913/3689818‑3690003

CCCATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTG                                                                                              >  SRR4302542.2780576/1‑94 (MQ=60)

 CCATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGT                                                                                             >  SRR4302542.1661004/1‑94 (MQ=60)

 CCATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGT                                                                                             <  SRR4302542.405691/94‑1 (MQ=60)

 CCATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGT                                                                                             <  SRR4302542.7125317/94‑1 (MQ=60)

 CCATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGT                                                                                             >  SRR4302542.2607770/1‑94 (MQ=60)

  CATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTC                                                                                            >  SRR4302542.2741367/1‑94 (MQ=60)

    TCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCAC                                                                                          >  SRR4302542.7493482/1‑94 (MQ=60)

     CAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACC                                                                                         >  SRR4302542.5077956/1‑94 (MQ=60)

     CAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACC                                                                                         <  SRR4302542.4692202/94‑1 (MQ=60)

     CAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACC                                                                                         <  SRR4302542.2763118/94‑1 (MQ=60)

     CAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACC                                                                                         >  SRR4302542.6323033/1‑94 (MQ=60)

      AGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCA                                                                                        <  SRR4302542.3716406/94‑1 (MQ=60)

      AGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCA                                                                                        >  SRR4302542.4063067/1‑94 (MQ=60)

       GTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCAC                                                                                       >  SRR4302542.1589217/1‑94 (MQ=60)

       GTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCAC                                                                                       <  SRR4302542.5418401/94‑1 (MQ=60)

        TGCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACT                                                                                      >  SRR4302542.4915575/1‑94 (MQ=60)

          CATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTC                                                                                    >  SRR4302542.3803333/1‑94 (MQ=60)

           ATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCA                                                                                   >  SRR4302542.4118757/1‑94 (MQ=60)

           ATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCA                                                                                   >  SRR4302542.7371025/1‑94 (MQ=60)

            TCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCAT                                                                                  <  SRR4302542.1692196/94‑1 (MQ=60)

            TCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCAT                                                                                  <  SRR4302542.4053554/94‑1 (MQ=60)

            TCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCAT                                                                                  >  SRR4302542.7381117/1‑94 (MQ=60)

            TCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCAT                                                                                  <  SRR4302542.3588742/94‑1 (MQ=60)

             CATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATC                                                                                 >  SRR4302542.3017859/1‑94 (MQ=60)

              NNTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCG                                                                                <  SRR4302542.2840958/94‑1 (MQ=60)

               TTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGC                                                                               >  SRR4302542.1791812/1‑94 (MQ=60)

                TGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCT                                                                              >  SRR4302542.3434377/1‑94 (MQ=60)

                TGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCT                                                                              >  SRR4302542.3412247/1‑94 (MQ=60)

                TGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCT                                                                              >  SRR4302542.4833258/1‑94 (MQ=60)

                TGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCT                                                                              >  SRR4302542.7402735/1‑94 (MQ=60)

                TGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCT                                                                              <  SRR4302542.2020114/94‑1 (MQ=60)

                 GAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTG                                                                             <  SRR4302542.2847404/94‑1 (MQ=60)

                 GAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTG                                                                             <  SRR4302542.6703411/94‑1 (MQ=60)

                  AGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGC                                                                            >  SRR4302542.5150337/1‑94 (MQ=60)

                   GATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCG                                                                           <  SRR4302542.226673/94‑1 (MQ=60)

                   GATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCG                                                                           >  SRR4302542.4830858/1‑94 (MQ=60)

                      AAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCAT                                                                        <  SRR4302542.3011555/94‑1 (MQ=60)

                      AAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCAT                                                                        <  SRR4302542.6409949/94‑1 (MQ=60)

                      AAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCAT                                                                        >  SRR4302542.749375/1‑94 (MQ=60)

                       AACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATA                                                                       <  SRR4302542.3558850/94‑1 (MQ=60)

                       AACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATA                                                                       <  SRR4302542.7455667/94‑1 (MQ=60)

                       AACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATA                                                                       >  SRR4302542.1444467/1‑94 (MQ=60)

                        ACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATAC                                                                      >  SRR4302542.4498617/1‑94 (MQ=60)

                        ACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATAC                                                                      <  SRR4302542.5987980/94‑1 (MQ=60)

                          CTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCA                                                                    <  SRR4302542.5857987/94‑1 (MQ=60)

                           TTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAA                                                                   <  SRR4302542.6518488/94‑1 (MQ=60)

                           TTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAA                                                                   <  SRR4302542.1242545/94‑1 (MQ=60)

                             TAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAAC                                                                 <  SRR4302542.5645343/94‑1 (MQ=60)

                              AACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACT                                                                >  SRR4302542.1991352/1‑94 (MQ=60)

                              AACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACT                                                                <  SRR4302542.2714732/94‑1 (MQ=60)

                               ACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTC                                                               >  SRR4302542.2507713/1‑94 (MQ=60)

                                CTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCA                                                              <  SRR4302542.6458624/94‑1 (MQ=60)

                                CTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCA                                                              >  SRR4302542.4883545/1‑94 (MQ=60)

                                CTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCCCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCA                                                              <  SRR4302542.2382311/94‑1 (MQ=60)

                                CTGCGACTGGACAGGCAGTAACGATGGCGATGGGGGGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCA                                                              >  SRR4302542.4542663/1‑94 (MQ=60)

                                  GCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAAT                                                            <  SRR4302542.4360589/94‑1 (MQ=60)

                                  GCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAAT                                                            <  SRR4302542.3966982/94‑1 (MQ=60)

                                  GCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAAT                                                            <  SRR4302542.5501386/94‑1 (MQ=60)

                                  GCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAAT                                                            <  SRR4302542.5109973/94‑1 (MQ=60)

                                   CGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATG                                                           >  SRR4302542.7435918/1‑94 (MQ=60)

                                    GACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGC                                                          >  SRR4302542.1167210/1‑94 (MQ=60)

                                    GACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGC                                                          <  SRR4302542.3453111/94‑1 (MQ=60)

                                     ACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCT                                                         <  SRR4302542.5314953/94‑1 (MQ=60)

                                     ACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCT                                                         <  SRR4302542.4688489/94‑1 (MQ=60)

                                     ACTGGACAGGCAGTAACGATGGCGATGGGGGGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCT                                                         >  SRR4302542.228507/1‑94 (MQ=60)

                                      CTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTG                                                        >  SRR4302542.4770101/1‑94 (MQ=60)

                                        GGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCC                                                      <  SRR4302542.6429776/94‑1 (MQ=60)

                                         GACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCG                                                     >  SRR4302542.3123723/1‑94 (MQ=60)

                                           NNGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTT                                                   <  SRR4302542.3079750/94‑1 (MQ=60)

                                           CAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTT                                                   <  SRR4302542.3456855/94‑1 (MQ=60)

                                            AGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTC                                                  <  SRR4302542.1494332/94‑1 (MQ=60)

                                            AGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTC                                                  <  SRR4302542.5881706/94‑1 (MQ=60)

                                             GGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCTCCACTTCATCGCTGCGCATACAAAACTCAATGCTGCCGTTCG                                                 <  SRR4302542.6737104/94‑1 (MQ=60)

                                             GGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCG                                                 <  SRR4302542.6737103/94‑1 (MQ=60)

                                              GCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGG                                                >  SRR4302542.5053711/1‑94 (MQ=60)

                                               CGGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGG                                               >  SRR4302542.849157/1‑94 (MQ=60)

                                                 GTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTT                                             >  SRR4302542.2705701/1‑94 (MQ=60)

                                                 GTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTT                                             >  SRR4302542.3509077/1‑94 (MQ=60)

                                                 CTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTT                                             >  SRR4302542.6197154/1‑94 (MQ=60)

                                                  TAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTA                                            <  SRR4302542.1660878/94‑1 (MQ=60)

                                                  TAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTA                                            <  SRR4302542.3000390/94‑1 (MQ=60)

                                                  TAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTA                                            <  SRR4302542.2083500/94‑1 (MQ=60)

                                                  TAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTA                                            <  SRR4302542.1757236/94‑1 (MQ=60)

                                                   AACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAA                                           >  SRR4302542.3956824/1‑94 (MQ=60)

                                                   AACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAA                                           >  SRR4302542.511089/1‑94 (MQ=60)

                                                   AACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAA                                           >  SRR4302542.5714997/1‑94 (MQ=60)

                                                   AACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAA                                           >  SRR4302542.860096/1‑94 (MQ=60)

                                                     CGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATG                                         >  SRR4302542.4264438/1‑94 (MQ=60)

                                                     CGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATG                                         <  SRR4302542.3142928/94‑1 (MQ=60)

                                                      GATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGC                                        <  SRR4302542.2057696/94‑1 (MQ=60)

                                                       ATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCC                                       <  SRR4302542.2493358/94‑1 (MQ=60)

                                                       ATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCC                                       >  SRR4302542.5068062/1‑94 (MQ=60)

                                                         GGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCAC                                     <  SRR4302542.6155120/94‑1 (MQ=60)

                                                         GGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCAC                                     <  SRR4302542.4766118/94‑1 (MQ=60)

                                                          GCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACG                                    <  SRR4302542.2629723/94‑1 (MQ=60)

                                                           CGATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGT                                   >  SRR4302542.2872794/1‑94 (MQ=60)

                                                           CGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGT                                   >  SRR4302542.7514154/1‑94 (MQ=60)

                                                            GATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTA                                  <  SRR4302542.5922068/94‑1 (MQ=60)

                                                             NNGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAG                                 <  SRR4302542.1860552/94‑1 (MQ=60)

                                                             ATGGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAG                                 >  SRR4302542.3743943/1‑94 (MQ=60)

                                                               GGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCA                               <  SRR4302542.2121480/94‑1 (MQ=60)

                                                               GGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCA                               >  SRR4302542.5507509/1‑94 (MQ=60)

                                                               GGGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCA                               <  SRR4302542.1073076/94‑1 (MQ=60)

                                                                GGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCAC                              >  SRR4302542.7174930/1‑94 (MQ=60)

                                                                GGGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCAC                              >  SRR4302542.2003833/1‑94 (MQ=60)

                                                                 GGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACC                             <  SRR4302542.3667199/94‑1 (MQ=60)

                                                                 GGTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACC                             <  SRR4302542.3611561/94‑1 (MQ=60)

                                                                 GGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACC                             >  SRR4302542.711713/1‑94 (MQ=60)

                                                                  GTGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCA                            >  SRR4302542.2848646/1‑94 (MQ=60)

                                                                  GTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCA                            >  SRR4302542.7488835/1‑94 (MQ=60)

                                                                   TGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCAT                           <  SRR4302542.5521553/94‑1 (MQ=60)

                                                                   TGTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCAT                           <  SRR4302542.2663652/94‑1 (MQ=60)

                                                                    GTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATG                          >  SRR4302542.7015806/1‑94 (MQ=60)

                                                                    GTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATG                          >  SRR4302542.6146805/1‑94 (MQ=60)

                                                                    GTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATG                          >  SRR4302542.743148/1‑94 (MQ=60)

                                                                    GTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATG                          >  SRR4302542.6357760/1‑94 (MQ=60)

                                                                    GTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATG                          >  SRR4302542.6523033/1‑94 (MQ=60)

                                                                    GTATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATG                          >  SRR4302542.3889296/1‑94 (MQ=60)

                                                                     TATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGC                         <  SRR4302542.5915903/94‑1 (MQ=60)

                                                                     TATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGC                         <  SRR4302542.2868170/94‑1 (MQ=60)

                                                                     TATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGC                         >  SRR4302542.3879630/1‑94 (MQ=60)

                                                                      ATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCT                        >  SRR4302542.99317/1‑94 (MQ=60)

                                                                      ATTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCT                        >  SRR4302542.655496/1‑94 (MQ=60)

                                                                       TTCGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTG                       <  SRR4302542.3169733/94‑1 (MQ=60)

                                                                         CGAGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCC                     <  SRR4302542.2462044/94‑1 (MQ=60)

                                                                          GAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCC                    <  SRR4302542.860653/94‑1 (MQ=60)

                                                                           AGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCG                   >  SRR4302542.7372245/1‑94 (MQ=60)

                                                                           AGGTTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCG                   >  SRR4302542.4379575/1‑94 (MQ=60)

                                                                            GGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGG                  <  SRR4302542.748370/94‑1 (MQ=60)

                                                                              TTGAGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCG                <  SRR4302542.941990/94‑1 (MQ=60)

                                                                                 AGCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCG             <  SRR4302542.3291782/94‑1 (MQ=60)

                                                                                 AGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCG             <  SRR4302542.4764300/94‑1 (MQ=60)

                                                                                  GCATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGG            >  SRR4302542.4467176/1‑94 (MQ=60)

                                                                                   CATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGT           <  SRR4302542.5315075/94‑1 (MQ=60)

                                                                                   CATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGT           <  SRR4302542.863730/94‑1 (MQ=60)

                                                                                    ATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTG          >  SRR4302542.1797748/1‑94 (MQ=60)

                                                                                    ATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTG          >  SRR4302542.7592178/1‑94 (MQ=60)

                                                                                    ATCGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTG          <  SRR4302542.6691123/94‑1 (MQ=60)

                                                                                      CGCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCA        <  SRR4302542.2601979/94‑1 (MQ=60)

                                                                                       GCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAA       >  SRR4302542.2655810/1‑94 (MQ=60)

                                                                                       GCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAA       >  SRR4302542.5797401/1‑94 (MQ=60)

                                                                                       GCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAA       >  SRR4302542.7382460/1‑94 (MQ=60)

                                                                                       GCCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAA       >  SRR4302542.6694743/1‑94 (MQ=60)

                                                                                        CCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAT      >  SRR4302542.290557/1‑94 (MQ=60)

                                                                                        CCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAT      <  SRR4302542.2861422/94‑1 (MQ=60)

                                                                                        CCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAT      <  SRR4302542.3763527/94‑1 (MQ=60)

                                                                                        CCTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAAT      >  SRR4302542.6828727/1‑94 (MQ=60)

                                                                                        CCTTTGTCACCACTTCATCGCCGCCCATCCCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGGGCAAT      >  SRR4302542.3434474/1‑94 (MQ=60)

                                                                                         CTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATT     >  SRR4302542.4406417/1‑94 (MQ=60)

                                                                                         CTTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATT     >  SRR4302542.4406418/1‑94 (MQ=60)

                                                                                         CTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATT     >  SRR4302542.3109418/1‑94 (MQ=60)

                                                                                         CTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATT     >  SRR4302542.7311737/1‑94 (MQ=60)

                                                                                         CTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATT     >  SRR4302542.1181252/1‑94 (MQ=60)

                                                                                          TTTGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTT    <  SRR4302542.2242062/94‑1 (MQ=60)

                                                                                          TTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTT    >  SRR4302542.6403737/1‑94 (MQ=60)

                                                                                            TGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGC  >  SRR4302542.4148106/1‑94 (MQ=60)

CCCATCAGTTCATCATTGAGATAAACCTTTAACTGCGACTGGACAGGCAGTAACGATGGCGATGGGGTGTATTCGAGGTTGAGCATCGCCTTCGTCACCACTTCATCGCTGCGCATACCAAACTCAATGCTGCCGTTCGGGTTAATGCCACGTAGCACCATGCTGCCCGGCGGCGGTGCAATTTGC  >  NC_000913/3689818‑3690003

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`