Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,808,645 G→A S45S (AGC→AGT mutM ← formamidopyrimidine DNA glycosylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,808,6450GA85.1% 898.7 / 106.5 335S45S (AGC→AGTmutMformamidopyrimidine DNA glycosylase
Reads supporting (aligned to +/- strand):  ref base G (32/18);  new base A (162/123);  total (194/141)
Fisher's exact test for biased strand distribution p-value = 3.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.83e-01

Only 100 of 336 total aligned reads displayed.

CCAGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTT  >  NC_000913/3808553‑3808736
                                                                                            |                                                                                           
    aCATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTa                                                                                         >  1:2316796/1‑93 (MQ=255)
    aCATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTa                                                                                         >  2:1018609/1‑93 (MQ=255)
      aTCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTaaa                                                                                       <  2:1234499/93‑1 (MQ=255)
      aTCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTaaa                                                                                       >  1:4589107/1‑93 (MQ=255)
      aTCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTaaa                                                                                       >  2:6170149/1‑93 (MQ=255)
       tCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGGCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAAc                                                                                      >  1:5781231/1‑93 (MQ=255)
        cccTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACg                                                                                     <  1:767661/93‑1 (MQ=255)
        cccTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACg                                                                                     <  2:2022031/93‑1 (MQ=255)
        cccTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACg                                                                                     <  1:5489966/93‑1 (MQ=255)
         ccTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACgg                                                                                    >  2:5785157/1‑93 (MQ=255)
         ccTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACgg                                                                                    >  2:4753465/1‑93 (MQ=255)
          cTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGt                                                                                   <  1:6347127/93‑1 (MQ=255)
          cTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGt                                                                                   <  2:4232196/93‑1 (MQ=255)
          cTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGt                                                                                   <  1:5581252/93‑1 (MQ=255)
           tAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTa                                                                                  >  2:2233290/1‑93 (MQ=255)
             aatgaatgATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGa                                                                                >  1:5275273/1‑93 (MQ=255)
             aatgaatgATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGa                                                                                <  1:6855528/93‑1 (MQ=255)
             aatgaatgATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGa                                                                                >  2:2724127/1‑93 (MQ=255)
             aatgaatgATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGa                                                                                >  1:7105336/1‑93 (MQ=255)
              atgaatgaTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGAt                                                                               >  2:3390263/1‑93 (MQ=255)
               tgaatgaTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGAtc                                                                              >  1:6012249/1‑93 (MQ=255)
               tgaatgaTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGAtc                                                                              >  2:5907255/1‑93 (MQ=255)
               tgaatgaTAATCCAGCCCTCAGGCAGCTCAGGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGAtc                                                                              <  1:3906343/93‑1 (MQ=255)
                 aatgaTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGAtctc                                                                            <  2:3797504/93‑1 (MQ=255)
                   tgaTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCtctt                                                                          <  2:818962/93‑1 (MQ=255)
                    gaTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCtcttc                                                                         >  2:1056904/1‑93 (MQ=255)
                    gaTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCtcttc                                                                         <  2:4802383/93‑1 (MQ=255)
                    gaTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCtcttc                                                                         <  1:3474487/93‑1 (MQ=255)
                     aTAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCtcttct                                                                        >  2:7413429/1‑93 (MQ=255)
                      tAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTg                                                                       >  2:6939493/1‑93 (MQ=255)
                      tAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTg                                                                       >  1:6417461/1‑93 (MQ=255)
                       aacccAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGa                                                                      <  1:5135443/90‑1 (MQ=255)
                        aTCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGaa                                                                     <  2:349607/93‑1 (MQ=255)
                        aTCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGaa                                                                     >  1:2234446/1‑93 (MQ=255)
                         tCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGaaa                                                                    <  2:60978/93‑1 (MQ=255)
                         tCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGaaa                                                                    >  1:1647278/1‑93 (MQ=255)
                          ccAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAAc                                                                   <  2:6699944/93‑1 (MQ=255)
                            aGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCg                                                                 >  2:1406645/1‑93 (MQ=255)
                            aGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCg                                                                 >  2:6484806/1‑93 (MQ=255)
                             gCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCgg                                                                <  1:2854839/93‑1 (MQ=255)
                              cccTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGc                                                               <  1:6450087/93‑1 (MQ=255)
                               ccTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGcc                                                              >  2:1681346/1‑93 (MQ=255)
                                cTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCa                                                             >  1:2600990/1‑93 (MQ=255)
                                   aGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAgcg                                                          >  2:5125369/1‑93 (MQ=255)
                                    ggCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAgcgc                                                         >  2:13075/1‑93 (MQ=255)
                                       aGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAg                                                      >  2:6598234/1‑93 (MQ=255)
                                        gCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGc                                                     >  2:2886/1‑93 (MQ=255)
                                        gCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGc                                                     >  2:4562569/1‑93 (MQ=255)
                                         cTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCg                                                    >  1:4813835/1‑93 (MQ=255)
                                           ccAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTc                                                  <  2:7329098/93‑1 (MQ=255)
                                           ccAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTc                                                  >  2:2541572/1‑93 (MQ=255)
                                              gcagcagATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGt                                               >  2:5345863/1‑93 (MQ=255)
                                              gcagcagATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGt                                               <  2:7262050/93‑1 (MQ=255)
                                                agcagATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTg                                             >  1:6726593/1‑93 (MQ=255)
                                                 gcagATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTgc                                            >  1:4653908/1‑93 (MQ=255)
                                                    gATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGca                                         >  2:3955180/1‑93 (MQ=255)
                                                    gATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGca                                         >  1:7252899/1‑93 (MQ=255)
                                                     atatTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGcac                                        >  1:1258893/1‑93 (MQ=255)
                                                      tatTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGcacc                                       >  1:6199139/1‑93 (MQ=255)
                                                      tatTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGcacc                                       <  2:5457228/93‑1 (MQ=255)
                                                        tttAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGcaccac                                     <  1:3057342/93‑1 (MQ=255)
                                                         ttAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACt                                    >  1:1005770/1‑93 (MQ=255)
                                                           aGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGc                                  <  1:4386871/93‑1 (MQ=255)
                                                            gCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCa                                 >  2:2419601/1‑93 (MQ=255)
                                                            gCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCa                                 >  2:7103143/1‑93 (MQ=255)
                                                             cccGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCAt                                <  1:1401757/93‑1 (MQ=255)
                                                              ccgccgCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATg                               <  1:6664813/93‑1 (MQ=255)
                                                                gccgcTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATgaa                             <  2:3662276/93‑1 (MQ=255)
                                                                 ccgcTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATgaag                            >  1:5937003/1‑93 (MQ=255)
                                                                  cgcTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATgaaga                           >  2:4115894/1‑93 (MQ=255)
                                                                   gcTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATgaagaa                          >  2:4321142/1‑93 (MQ=255)
                                                                   gcTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATgaagaa                          <  1:1169204/93‑1 (MQ=255)
                                                                   gcTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATgaagaa                          >  1:2644211/1‑93 (MQ=255)
                                                                    cTGCACGCTAAGCACGGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAAt                         <  1:2376786/93‑1 (MQ=255)
                                                                     tGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATg                        >  1:4406149/1‑93 (MQ=255)
                                                                      gCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATgg                       >  2:147788/1‑93 (MQ=255)
                                                                       cACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGt                      <  1:3968361/93‑1 (MQ=255)
                                                                        aCGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGtt                     >  2:2137481/1‑93 (MQ=255)
                                                                         cGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTg                    <  1:4785133/93‑1 (MQ=255)
                                                                          gCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGc                   >  1:1947169/1‑93 (MQ=255)
                                                                            tAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCAc                 >  1:2529447/1‑93 (MQ=255)
                                                                             aaGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCAcc                >  1:413641/1‑93 (MQ=255)
                                                                                 aCTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACg            >  1:4157103/1‑93 (MQ=255)
                                                                                  cTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACga           >  2:3128196/1‑93 (MQ=255)
                                                                                  cTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACga           >  2:4878098/1‑93 (MQ=255)
                                                                                   tggttggtCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACgag          <  2:6264070/93‑1 (MQ=255)
                                                                                   tggttggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACgag          >  2:6009846/1‑93 (MQ=255)
                                                                                   tggttggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACgag          >  1:3567235/1‑93 (MQ=255)
                                                                                    ggttggtCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACgaga         <  1:5019655/93‑1 (MQ=255)
                                                                                    ggttggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACgaga         <  2:5589825/93‑1 (MQ=255)
                                                                                    ggttggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACgaga         <  1:5446029/93‑1 (MQ=255)
                                                                                    ggttggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACgaga         <  1:607159/93‑1 (MQ=255)
                                                                                    ggttggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACgaga         <  2:7085552/93‑1 (MQ=255)
                                                                                    ggttggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACgaga         >  2:1708617/1‑93 (MQ=255)
                                                                                     gttggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGAt        >  1:3321431/1‑93 (MQ=255)
                                                                                       tggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGc      >  1:3788509/1‑93 (MQ=255)
                                                                                        ggtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCg     <  2:3265938/93‑1 (MQ=255)
                                                                                         gtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCgg    >  2:4988177/1‑93 (MQ=255)
                                                                                         gtCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCgg    <  2:2680619/93‑1 (MQ=255)
                                                                                           cGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGtt  <  2:878197/93‑1 (MQ=255)
                                                                                            |                                                                                           
CCAGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTT  >  NC_000913/3808553‑3808736

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCCAGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCT  >  NC_000913/3808552‑3808738
                                                                                             |                                                                                             
GCCAGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCG                                                                                               <  SRR4302542.2100533/94‑1 (MQ=60)
GCCAGACATCCCTAAATGAATGATAATCCAGCCCCCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCA                                                                                               <  SRR4302542.7202284/94‑1 (MQ=60)
 CCAGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGC                                                                                              <  SRR4302542.2662510/94‑1 (MQ=60)
 CCAGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGC                                                                                              >  SRR4302542.6508715/1‑94 (MQ=60)
 CCAGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCAC                                                                                              >  SRR4302542.122650/1‑94 (MQ=60)
  CAGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACT                                                                                             <  SRR4302542.532780/94‑1 (MQ=60)
   GGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCACCACCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGCCACTT                                                                                            >  SRR4302542.2419557/1‑94 (MQ=60)
    GACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTA                                                                                           <  SRR4302542.2861473/94‑1 (MQ=60)
    GACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTA                                                                                           >  SRR4302542.2336670/1‑94 (MQ=60)
     ACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAA                                                                                          >  SRR4302542.4720021/1‑94 (MQ=60)
     ACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAA                                                                                          <  SRR4302542.6114265/94‑1 (MQ=60)
      CATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAA                                                                                         >  SRR4302542.4633989/1‑94 (MQ=60)
      CATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAA                                                                                         >  SRR4302542.4559556/1‑94 (MQ=60)
       ATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGGCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAAC                                                                                        >  SRR4302542.5837367/1‑94 (MQ=60)
         CCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGG                                                                                      <  SRR4302542.5543300/94‑1 (MQ=60)
         CCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGG                                                                                      <  SRR4302542.774309/94‑1 (MQ=60)
         CCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGG                                                                                      >  SRR4302542.2581934/1‑94 (MQ=60)
          CCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGT                                                                                     >  SRR4302542.4177903/1‑94 (MQ=60)
          CCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGT                                                                                     <  SRR4302542.1508519/94‑1 (MQ=60)
          CCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGT                                                                                     >  SRR4302542.6768736/1‑94 (MQ=60)
          CCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGT                                                                                     >  SRR4302542.7122267/1‑94 (MQ=60)
           CTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTA                                                                                    <  SRR4302542.6409662/94‑1 (MQ=60)
           CTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTA                                                                                    <  SRR4302542.5635483/94‑1 (MQ=60)
           CTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTA                                                                                    >  SRR4302542.7357286/1‑94 (MQ=60)
            TAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAG                                                                                   <  SRR4302542.3829962/94‑1 (MQ=60)
            TAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAG                                                                                   >  SRR4302542.7217107/1‑94 (MQ=60)
             AAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGA                                                                                  >  SRR4302542.5326536/1‑94 (MQ=60)
             AAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGA                                                                                  >  SRR4302542.4914841/1‑94 (MQ=60)
             AAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGA                                                                                  >  SRR4302542.6571279/1‑94 (MQ=60)
             AAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGA                                                                                  >  SRR4302542.5406268/1‑94 (MQ=60)
             AAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGA                                                                                  >  SRR4302542.7175081/1‑94 (MQ=60)
              AATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGAT                                                                                 <  SRR4302542.6922905/94‑1 (MQ=60)
              AATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGAT                                                                                 >  SRR4302542.2669000/1‑94 (MQ=60)
               ATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATC                                                                                >  SRR4302542.5283727/1‑94 (MQ=60)
               ATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATC                                                                                >  SRR4302542.6070463/1‑94 (MQ=60)
                TGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCT                                                                               <  SRR4302542.4856676/94‑1 (MQ=60)
                TGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCT                                                                               <  SRR4302542.3327642/94‑1 (MQ=60)
                TGAATGATAATCCAGCCCTCAGGCAGCTCAGGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCT                                                                               <  SRR4302542.3944905/94‑1 (MQ=60)
                   ATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTT                                                                            >  SRR4302542.1270218/1‑94 (MQ=60)
                   ATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTT                                                                            <  SRR4302542.3409218/94‑1 (MQ=60)
                    TGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTC                                                                           >  SRR4302542.4140962/1‑94 (MQ=60)
                    TGATAACCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTC                                                                           <  SRR4302542.5221989/94‑1 (MQ=60)
                     GATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCT                                                                          <  SRR4302542.2338921/94‑1 (MQ=60)
                     GATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTATATCTCTTCT                                                                          <  SRR4302542.4192088/94‑1 (MQ=60)
                     GATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCT                                                                          <  SRR4302542.3507011/94‑1 (MQ=60)
                      ATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTG                                                                         <  SRR4302542.4433337/94‑1 (MQ=60)
                      ATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTG                                                                         >  SRR4302542.6480705/1‑94 (MQ=60)
                      ATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTG                                                                         >  SRR4302542.7105607/1‑94 (MQ=60)
                       TAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGA                                                                        >  SRR4302542.2743332/1‑94 (MQ=60)
                       TAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGA                                                                        <  SRR4302542.818929/94‑1 (MQ=60)
                        AATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAA                                                                       >  SRR4302542.2253667/1‑94 (MQ=60)
                        AACCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAA                                                                       <  SRR4302542.5185364/94‑1 (MQ=60)
                         ATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAA                                                                      >  SRR4302542.1084608/1‑94 (MQ=60)
                         ATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAA                                                                      >  SRR4302542.3510675/1‑94 (MQ=60)
                         ATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAA                                                                      >  SRR4302542.1661519/1‑94 (MQ=60)
                          TCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAAC                                                                     >  SRR4302542.2576457/1‑94 (MQ=60)
                           CCAGCCCTCAGGCAGCTCCAGCAGCAGATCTTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACC                                                                    <  SRR4302542.4435902/94‑1 (MQ=60)
                           CCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACC                                                                    >  SRR4302542.973774/1‑94 (MQ=60)
                           CCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACC                                                                    >  SRR4302542.3956253/1‑94 (MQ=60)
                             AGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGG                                                                  <  SRR4302542.5111987/94‑1 (MQ=60)
                             AGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGG                                                                  >  SRR4302542.6909781/1‑94 (MQ=60)
                              GCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGC                                                                 <  SRR4302542.4860460/94‑1 (MQ=60)
                              GCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGC                                                                 >  SRR4302542.4688388/1‑94 (MQ=60)
                              GCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGC                                                                 <  SRR4302542.2882274/94‑1 (MQ=60)
                               CCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCC                                                                >  SRR4302542.3662094/1‑94 (MQ=60)
                               CCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCC                                                                <  SRR4302542.6513601/94‑1 (MQ=60)
                               CCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCC                                                                >  SRR4302542.2259020/1‑94 (MQ=60)
                                CCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCA                                                               >  SRR4302542.2132154/1‑94 (MQ=60)
                                CCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCA                                                               >  SRR4302542.4000587/1‑94 (MQ=60)
                                CCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCA                                                               >  SRR4302542.2626151/1‑94 (MQ=60)
                                CCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGGCACTTAAACCGTAGATCcctttctaaaacggcca                                                               >  SRR4302542.1221013/1‑77 (MQ=60)
                                 CTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAG                                                              >  SRR4302542.2397428/1‑94 (MQ=60)
                                   CAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCG                                                            <  SRR4302542.3422551/94‑1 (MQ=60)
                                    AGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGC                                                           >  SRR4302542.3771553/1‑94 (MQ=60)
                                     GGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCA                                                          >  SRR4302542.1918923/1‑94 (MQ=60)
                                      GCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAA                                                         <  SRR4302542.1378973/94‑1 (MQ=60)
                                       CAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAG                                                        >  SRR4302542.366429/1‑94 (MQ=60)
                                         GCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCG                                                      >  SRR4302542.4860755/1‑94 (MQ=60)
                                          CTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGT                                                     >  SRR4302542.5509023/1‑94 (MQ=60)
                                            CCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCC                                                   <  SRR4302542.4693293/94‑1 (MQ=60)
                                            CCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCC                                                   <  SRR4302542.2745744/94‑1 (MQ=60)
                                                CAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTG                                               >  SRR4302542.6792819/1‑94 (MQ=60)
                                                CAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTG                                               >  SRR4302542.5518179/1‑94 (MQ=60)
                                                 AGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGC                                              >  SRR4302542.4699407/1‑94 (MQ=60)
                                                  GCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCG                                             >  SRR4302542.4113766/1‑94 (MQ=60)
                                                  GCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCG                                             >  SRR4302542.1165931/1‑94 (MQ=60)
                                                   CAGATATTTAGACCGCCGCTGCCCGCTAAGCCCTGGCTGGAAACTTAAACGGTAGATCTCTTCTGCAACCGGCAAGCGCAAGCGgctgttgggt                                            >  SRR4302542.6349033/1‑84 (MQ=35)
                                                    AGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCA                                           >  SRR4302542.816828/1‑94 (MQ=60)
                                                    AGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCA                                           >  SRR4302542.1535593/1‑94 (MQ=60)
                                                    AGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCA                                           >  SRR4302542.7324009/1‑94 (MQ=60)
                                                     GATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCAC                                          <  SRR4302542.7265078/94‑1 (MQ=60)
                                                     GATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCAC                                          >  SRR4302542.1269720/1‑94 (MQ=60)
                                                     GATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCAC                                          >  SRR4302542.4247440/1‑94 (MQ=60)
                                                      ATATTTAGCCCGCCGCTGCCCGCTAAGCACTGGCTGGGCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGGGGCGCACC                                         >  SRR4302542.6994619/1‑94 (MQ=60)
                                                      ATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACC                                         >  SRR4302542.6259715/1‑94 (MQ=60)
                                                      ATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACC                                         >  SRR4302542.4674847/1‑94 (MQ=60)
                                                      ATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACC                                         >  SRR4302542.593718/1‑94 (MQ=60)
                                                       TATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCA                                        >  SRR4302542.4542677/1‑94 (MQ=60)
                                                        ATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCAC                                       >  SRR4302542.6088293/1‑94 (MQ=60)
                                                        ATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCAC                                       >  SRR4302542.6546662/1‑94 (MQ=60)
                                                        ATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCAC                                       >  SRR4302542.6658295/1‑94 (MQ=60)
                                                         TTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACT                                      <  SRR4302542.3086505/94‑1 (MQ=60)
                                                         TTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACT                                      >  SRR4302542.1014433/1‑94 (MQ=60)
                                                            AGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCA                                   <  SRR4302542.4429909/94‑1 (MQ=60)
                                                            AGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCA                                   <  SRR4302542.5718940/94‑1 (MQ=60)
                                                            AGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCA                                   <  SRR4302542.5638/94‑1 (MQ=60)
                                                              CCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATG                                 >  SRR4302542.6116388/1‑94 (MQ=60)
                                                              CCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATG                                 >  SRR4302542.2103652/1‑94 (MQ=60)
                                                              CCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATG                                 <  SRR4302542.1188122/94‑1 (MQ=60)
                                                              CCCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATG                                 <  SRR4302542.1413876/94‑1 (MQ=60)
                                                               CCGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGA                                <  SRR4302542.6730475/94‑1 (MQ=60)
                                                                CGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAA                               <  SRR4302542.3089207/94‑1 (MQ=60)
                                                                CGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAA                               >  SRR4302542.1333733/1‑94 (MQ=60)
                                                                CGCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAA                               >  SRR4302542.4999597/1‑94 (MQ=60)
                                                                 GCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAG                              <  SRR4302542.5330647/94‑1 (MQ=60)
                                                                 GCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAG                              <  SRR4302542.50714/94‑1 (MQ=60)
                                                                 GCCGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAG                              >  SRR4302542.5994524/1‑94 (MQ=60)
                                                                   CGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAA                            >  SRR4302542.6783279/1‑94 (MQ=60)
                                                                   CGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAA                            >  SRR4302542.7449793/1‑94 (MQ=60)
                                                                   CGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAA                            >  SRR4302542.2669745/1‑94 (MQ=60)
                                                                   CGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAA                            <  SRR4302542.6379601/94‑1 (MQ=60)
                                                                   CGCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAA                            <  SRR4302542.5427226/94‑1 (MQ=60)
                                                                    GCTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAAT                           <  SRR4302542.1179306/94‑1 (MQ=60)
                                                                     CTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATG                          >  SRR4302542.4449421/1‑94 (MQ=60)
                                                                     CTGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATG                          <  SRR4302542.3916406/94‑1 (MQ=60)
                                                                     CTGCACGCTAAGCACGGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATG                          <  SRR4302542.2398095/94‑1 (MQ=60)
                                                                      TGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGG                         <  SRR4302542.554819/94‑1 (MQ=60)
                                                                      TGCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGG                         <  SRR4302542.30867/94‑1 (MQ=60)
                                                                       GCACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGT                        <  SRR4302542.6190975/94‑1 (MQ=60)
                                                                        CACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTT                       <  SRR4302542.3542643/94‑1 (MQ=60)
                                                                        CACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTT                       <  SRR4302542.4007531/94‑1 (MQ=60)
                                                                         ACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTG                      <  SRR4302542.2491205/94‑1 (MQ=60)
                                                                         ACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTG                      <  SRR4302542.6344371/94‑1 (MQ=60)
                                                                         ACGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTGG                      >  SRR4302542.6435321/1‑94 (MQ=60)
                                                                          CGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGC                     >  SRR4302542.4807981/1‑94 (MQ=60)
                                                                          CGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGC                     >  SRR4302542.1964012/1‑94 (MQ=60)
                                                                          CGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGC                     >  SRR4302542.4150295/1‑94 (MQ=60)
                                                                          CGCTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGC                     <  SRR4302542.4831773/94‑1 (MQ=60)
                                                                            CTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCAC                   >  SRR4302542.2509830/1‑94 (MQ=60)
                                                                            CTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCAC                   >  SRR4302542.2553979/1‑94 (MQ=60)
                                                                            CTAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCAC                   >  SRR4302542.6007539/1‑94 (MQ=60)
                                                                             TAAGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACC                  >  SRR4302542.417198/1‑94 (MQ=60)
                                                                               AGCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAA                >  SRR4302542.2145991/1‑94 (MQ=60)
                                                                                GCACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAAC               <  SRR4302542.5005974/94‑1 (MQ=60)
                                                                                 CACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACG              <  SRR4302542.622774/94‑1 (MQ=60)
                                                                                 CACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACG              >  SRR4302542.4198028/1‑94 (MQ=60)
                                                                                 CACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACG              >  SRR4302542.55551/1‑94 (MQ=60)
                                                                                  ACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGA             <  SRR4302542.6493665/94‑1 (MQ=60)
                                                                                  ACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGA             >  SRR4302542.5887005/1‑94 (MQ=60)
                                                                                  ACTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGA             >  SRR4302542.5743202/1‑94 (MQ=60)
                                                                                   CTGGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAG            >  SRR4302542.3600535/1‑94 (MQ=60)
                                                                                     GGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGAT          <  SRR4302542.5068399/94‑1 (MQ=60)
                                                                                     GGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGAT          >  SRR4302542.3352710/1‑94 (MQ=60)
                                                                                     GGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGAT          <  SRR4302542.5498933/94‑1 (MQ=60)
                                                                                     GGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGAT          <  SRR4302542.6055935/94‑1 (MQ=60)
                                                                                     GGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGAT          <  SRR4302542.612384/94‑1 (MQ=60)
                                                                                     GGTTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGAT          <  SRR4302542.1712790/94‑1 (MQ=60)
                                                                                       TTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGC        >  SRR4302542.3825966/1‑94 (MQ=60)
                                                                                       TTGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGC        >  SRR4302542.3058461/1‑94 (MQ=60)
                                                                                        TGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCG       <  SRR4302542.2939966/94‑1 (MQ=60)
                                                                                        TGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCG       <  SRR4302542.2292456/94‑1 (MQ=60)
                                                                                        TGGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCG       <  SRR4302542.4331315/94‑1 (MQ=60)
                                                                                         GGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGG      >  SRR4302542.6478025/1‑94 (MQ=60)
                                                                                         GGTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGG      <  SRR4302542.6809239/94‑1 (MQ=60)
                                                                                          GTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGT     >  SRR4302542.4436375/1‑94 (MQ=60)
                                                                                          GTCACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGT     >  SRR4302542.3664077/1‑94 (MQ=60)
                                                                                          GTCACTTAAACCGTAGATCTCTTCTGAAACCGGGCAGCGCAAGCGTTCGTTGCcgcccaccggaagaagaaaggtttgcccaaccggattcggg     <  SRR4302542.6673118/94‑42 (MQ=38)
                                                                                             ACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCT  >  SRR4302542.1510309/1‑94 (MQ=60)
                                                                                             ACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCT  >  SRR4302542.3162044/1‑94 (MQ=60)
                                                                                             ACTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCT  >  SRR4302542.3200924/1‑94 (MQ=60)
                                                                                             |                                                                                             
GCCAGACATCCCTAAATGAATGATAATCCAGCCCTCAGGCAGCTCCAGCAGCAGATATTTAGCCCGCCGCTGCACGCTAAGCACTGGTTGGTCGCTTAAACGGTAGATCTCTTCTGAAACCGGCCAGCGCAAGCGTCCGTTGCGCACCACTGCATGAAGAATGGTTGCACCAACGAGATGCGGTTCT  >  NC_000913/3808552‑3808738

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: