Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	1061	294.1	15065038	98.6%	14854127	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	3,847,419	(C)_5→6	coding (345/1503 nt)	b3668 ←	sensor histidine protein kinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	3,847,414	1	.	C	84.4%	835.5 / 151.3	295	coding (350/1503 nt)	b3668	sensor histidine protein kinase
Reads supporting (aligned to +/- strand): ref base . (28/18); new base C (124/124); total (153/142)
Fisher's exact test for biased strand distribution p-value = 2.00e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.57e-02

Only 100 of 324 total aligned reads displayed.

CGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATC  >  NC_000913/3847322‑3847506

 gccAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAAcgccg‑‑c                                                                                             >  2:2791348/1‑93 (MQ=255)

 gccAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAAcgccg‑‑c                                                                                             >  1:7092600/1‑93 (MQ=255)

 gccAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAAcgccg‑‑c                                                                                             <  2:1002209/93‑1 (MQ=255)

  ccAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCGACAACGCCGCCGCCGTTAACgccg‑‑cc                                                                                            >  1:4267961/1‑93 (MQ=255)

   cAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑ccc                                                                                           <  1:5162289/93‑1 (MQ=255)

    aGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑cccc                                                                                          >  2:4399020/1‑93 (MQ=255)

        aaaGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑cccccctg                                                                                      <  2:5714826/93‑4 (MQ=255)

          aGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTaa                                                                                    <  1:1326161/93‑1 (MQ=255)

           gTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTaa                                                                                    >  2:3921574/1‑93 (MQ=255)

           gTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTaa                                                                                    >  1:4435018/1‑93 (MQ=255)

           gTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTaa                                                                                    >  1:3480080/1‑93 (MQ=255)

           gTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTaa                                                                                    >  1:1539681/1‑93 (MQ=255)

            tCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACa                                                                                  >  2:4983473/1‑93 (MQ=255)

              aGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAg                                                                                 >  1:3309444/1‑93 (MQ=255)

               gCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCa                                                                               >  2:5177301/1‑93 (MQ=255)

                 aaCAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCaa                                                                              <  2:4767704/93‑1 (MQ=255)

                 aaCAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCaa                                                                              <  1:5665179/93‑1 (MQ=255)

                 aaCAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCaa                                                                              <  2:4650270/93‑1 (MQ=255)

                  aCAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAg                                                                             >  1:7451037/1‑93 (MQ=255)

                   cAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAgg                                                                            <  1:7348417/93‑1 (MQ=255)

                    aGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGt                                                                           >  2:2698358/1‑93 (MQ=255)

                    aGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTg                                                                          <  2:4824287/93‑1 (MQ=255)

                    aGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTg                                                                          >  1:4080828/1‑93 (MQ=255)

                     gcgcATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTg                                                                          >  2:1177596/1‑93 (MQ=255)

                       gcATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTgcg                                                                        <  2:2440181/93‑1 (MQ=255)

                        cATTCCACGCCTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACACCGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTgcgc                                                                       <  2:872261/93‑1 (MQ=255)

                        cATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTgcgc                                                                       >  1:6101915/1‑93 (MQ=255)

                         aTTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGcc                                                                      >  2:4063212/1‑93 (MQ=255)

                         aTTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGcc                                                                      <  2:6356314/93‑1 (MQ=255)

                         aTTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGcc                                                                      <  2:2142369/93‑1 (MQ=255)

                         aTTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGcc                                                                      >  2:2555410/1‑93 (MQ=255)

                          ttCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCa                                                                     >  2:6974082/1‑93 (MQ=255)

                          ttCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCa                                                                     <  1:2768052/93‑1 (MQ=255)

                             cACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTc                                                                  >  2:3358411/1‑93 (MQ=255)

                             cACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTc                                                                  >  1:5064346/1‑93 (MQ=255)

                               cGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCAc                                                                <  1:1038766/93‑1 (MQ=255)

                               cGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCAc                                                                >  2:384540/1‑93 (MQ=255)

                                 cctctTTGCCGTCCAAAAGCAGGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGc                                                              <  1:6616613/92‑1 (MQ=255)

                                 aCTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGc                                                              >  1:460113/1‑93 (MQ=255)

                                  ctctTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTg                                                            >  2:3594674/1‑93 (MQ=255)

                                   tctTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTg                                                            >  1:2466062/1‑93 (MQ=255)

                                   tctTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTg                                                            <  2:5562166/93‑1 (MQ=255)

                                    ctTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGAt                                                          <  2:7530614/93‑1 (MQ=255)

                                     tttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGAt                                                          >  2:5272828/1‑93 (MQ=255)

                                      ttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATg                                                         >  2:4534732/1‑93 (MQ=255)

                                      ttGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATgg                                                        >  2:2919831/1‑93 (MQ=255)

                                       tGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATgg                                                        <  2:2219081/93‑1 (MQ=255)

                                       tGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATgg                                                        <  2:7149050/93‑1 (MQ=255)

                                       tGCCGTCCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATgg                                                        <  1:4556970/93‑1 (MQ=255)

                                           gTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGAt                                                    >  2:5302328/1‑93 (MQ=255)

                                           gTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGAt                                                    >  2:4097489/1‑93 (MQ=255)

                                           gTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGAt                                                    <  1:6847910/93‑1 (MQ=255)

                                             gCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAgc                                                 >  2:1951242/1‑93 (MQ=255)

                                              ccAAAGCCAGGGCAGCGACTGCAACAACGCCGTCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAgc                                                 <  2:6215455/93‑1 (MQ=255)

                                              ccAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAgc                                                 <  2:1422227/93‑1 (MQ=255)

                                                aaaGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAgcgc                                               >  1:1672077/1‑93 (MQ=255)

                                                    ccAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCgaga                                           <  2:3171367/93‑1 (MQ=255)

                                                     cAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGAt                                          >  1:5773160/1‑93 (MQ=255)

                                                     cAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGAt                                          <  1:5273400/93‑1 (MQ=255)

                                                      aGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATc                                         >  1:2351725/1‑93 (MQ=255)

                                                       gggCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCa                                        >  1:3899838/1‑93 (MQ=255)

                                                        ggCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCa                                        >  2:7475135/1‑93 (MQ=255)

                                                        ggCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAg                                       <  2:3515915/93‑1 (MQ=255)

                                                         gCAGCGACTGCAACAGCGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAgc                                      <  1:7184578/93‑1 (MQ=255)

                                                          cAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAgcg                                     >  1:2620198/1‑93 (MQ=255)

                                                             cGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTAc                                 <  1:2228874/93‑1 (MQ=255)

                                                              gACTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTAc                                 <  2:831797/93‑1 (MQ=255)

                                                              gACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACg                                >  2:5924174/1‑93 (MQ=255)

                                                               aCTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACg                                <  2:2859454/93‑1 (MQ=255)

                                                                cTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACgg                               >  2:1737001/1‑93 (MQ=255)

                                                                cTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACgg                               <  2:3279692/93‑1 (MQ=255)

                                                                cTGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACgg                               >  1:3031216/1‑93 (MQ=255)

                                                                 tGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAATGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACggg                              >  1:780756/1‑93 (MQ=255)

                                                                 tGCAACAACGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACggg                              >  2:6413084/1‑93 (MQ=255)

                                                                   caacaaCGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCa                            <  2:6481614/93‑1 (MQ=255)

                                                                    aacaacGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAg                           >  2:5845114/1‑93 (MQ=255)

                                                                    aacaacGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAg                           >  2:340850/1‑93 (MQ=255)

                                                                     acaacGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGt                          >  1:5210781/1‑93 (MQ=255)

                                                                       aacGCCCCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTaa                        <  1:1227446/93‑1 (MQ=255)

                                                                        acGCCGCCGCCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAAc                       >  1:195007/1‑93 (MQ=255)

                                                                        acGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACg                      >  1:1108340/1‑93 (MQ=255)

                                                                        acGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACg                      >  1:5516927/1‑93 (MQ=255)

                                                                        acGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACg                      >  2:5021042/1‑93 (MQ=255)

                                                                         cgccgccgcCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACg                      >  2:735208/1‑93 (MQ=255)

                                                                         cgccgccgcCGTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACg                      >  2:7257468/1‑93 (MQ=255)

                                                                           ccgccgccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTc                    <  2:5341170/93‑1 (MQ=255)

                                                                           ccgccgccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTc                    <  1:2688687/93‑1 (MQ=255)

                                                                            cgccgccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCa                   >  2:6151919/1‑93 (MQ=255)

                                                                            cgccgccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCa                   <  1:4750159/93‑1 (MQ=255)

                                                                             gccgccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAg                  <  1:1823729/93‑1 (MQ=255)

                                                                              ccgccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGt                 <  1:2318712/93‑1 (MQ=255)

                                                                              ccgccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGt                 >  1:3526296/1‑93 (MQ=255)

                                                                               cgccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTa                <  1:3798990/93‑1 (MQ=255)

                                                                                 ccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTaaa              >  1:1991543/1‑93 (MQ=255)

                                                                                 ccgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTaaa              <  1:6434572/93‑1 (MQ=255)

                                                                                  cgTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTaagc             <  2:6661616/93‑3 (MQ=255)

                                                                                   gTTAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACt            >  1:41217/1‑93 (MQ=255)

                                                                                     tAACGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTAc          <  2:2102357/93‑1 (MQ=255)

                                                                                       aCGCCGC‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCg        <  1:2151611/93‑1 (MQ=255)

                                                                                            g‑‑ccCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGatcatc  <  2:1335092/93‑1 (MQ=255)

CGCCAGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATC  >  NC_000913/3847322‑3847506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAAC  >  NC_000913/3847326‑3847512

AGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCC                                                                                               >  SRR4302542.2355163/1‑94 (MQ=60)

 GTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCC                                                                                              >  SRR4302542.2634461/1‑94 (MQ=60)

  TTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCct                                                                                             <  SRR4302542.7179022/94‑3 (MQ=60)

   TAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCctg                                                                                            <  SRR4302542.3934583/94‑4 (MQ=60)

   TAAAGACAGCAACAGCGCTTTCCACGCCTCTTTCCCGTCCCAAAGCCAGGGCAGCGTGTGCAACACCGCCCCCGCCGTTAACGCCG‑CCCCCTGT                                                                                            <  SRR4302542.2727454/94‑1 (MQ=53)

      AGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAA                                                                                          >  SRR4302542.3512648/1‑94 (MQ=60)

      AGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAA                                                                                          >  SRR4302542.4478556/1‑94 (MQ=60)

      AGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAA                                                                                          >  SRR4302542.1552978/1‑94 (MQ=60)

      AGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAAC                                                                                         <  SRR4302542.1337584/94‑1 (MQ=60)

         CAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAG                                                                                       >  SRR4302542.3340646/1‑94 (MQ=60)

         CAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAG                                                                                       <  SRR4302542.7485430/94‑1 (MQ=60)

          AGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGC                                                                                      >  SRR4302542.3131604/1‑94 (MQ=60)

             AACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAG                                                                                   <  SRR4302542.5720206/94‑1 (MQ=60)

             AACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAG                                                                                   <  SRR4302542.4681834/94‑1 (MQ=60)

             AACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAG                                                                                   >  SRR4302542.7523997/1‑94 (MQ=60)

             AACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAG                                                                                   <  SRR4302542.4381169/94‑1 (MQ=60)

              ACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGG                                                                                  <  SRR4302542.4776709/94‑1 (MQ=60)

              ACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGT                                                                                 <  SRR4302542.1497562/94‑1 (MQ=60)

               CAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGT                                                                                 <  SRR4302542.7420385/94‑1 (MQ=60)

               CAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTG                                                                                >  SRR4302542.4121044/1‑94 (MQ=60)

                AGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTG                                                                                <  SRR4302542.1973117/94‑1 (MQ=60)

                  CGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCG                                                                              >  SRR4302542.5107101/1‑94 (MQ=60)

                  CGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCG                                                                              <  SRR4302542.988306/94‑1 (MQ=60)

                   GCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGC                                                                             >  SRR4302542.6160963/1‑94 (MQ=60)

                     ATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCA                                                                           >  SRR4302542.2917680/1‑94 (MQ=60)

                     ATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCA                                                                           >  SRR4302542.5549135/1‑94 (MQ=60)

                      tccccCGACTCTTTGCCGCGCCAAAGCCAGGGTCGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAG                                                                          <  SRR4302542.4235422/89‑1 (MQ=60)

                      TTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAG                                                                          <  SRR4302542.2794720/94‑1 (MQ=60)

                       TCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGT                                                                         >  SRR4302542.3521423/1‑94 (MQ=60)

                        CCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTC                                                                        >  SRR4302542.5113560/1‑94 (MQ=60)

                         CACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCA                                                                       >  SRR4302542.5743719/1‑94 (MQ=60)

                         CACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCAC                                                                      >  SRR4302542.6180147/1‑94 (MQ=60)

                          ACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCAC                                                                      <  SRR4302542.4124392/94‑1 (MQ=60)

                           CGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACG                                                                     <  SRR4302542.745395/94‑1 (MQ=60)

                           CGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACG                                                                     >  SRR4302542.1218893/1‑94 (MQ=60)

                           CGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACG                                                                     <  SRR4302542.1047690/94‑1 (MQ=60)

                           CGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACG                                                                     >  SRR4302542.764230/1‑94 (MQ=60)

                           CGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGCTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACG                                                                     <  SRR4302542.6289605/94‑1 (MQ=60)

                            GACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGC                                                                    >  SRR4302542.5746027/1‑94 (MQ=60)

                            GACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGC                                                                    >  SRR4302542.464093/1‑94 (MQ=60)

                            GACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGC                                                                    >  SRR4302542.4643903/1‑94 (MQ=60)

                             CCTCTTTGCCGTCCAAAAGCAGGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCT                                                                   <  SRR4302542.6681842/94‑1 (MQ=60)

                             ACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCT                                                                   >  SRR4302542.6117599/1‑94 (MQ=60)

                              CTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTG                                                                  >  SRR4302542.2490003/1‑94 (MQ=60)

                              CTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTG                                                                  >  SRR4302542.1619101/1‑94 (MQ=60)

                                CTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGAT                                                                >  SRR4302542.5201266/1‑94 (MQ=60)

                                CTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGAT                                                                <  SRR4302542.3499990/94‑1 (MQ=60)

                                CTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGAT                                                                >  SRR4302542.2512961/1‑94 (MQ=60)

                                CTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGAT                                                                <  SRR4302542.1369108/94‑1 (MQ=60)

                                 TTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATG                                                               >  SRR4302542.2656033/1‑94 (MQ=60)

                                  TTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGG                                                              <  SRR4302542.4115289/94‑1 (MQ=60)

                                   TGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCG                                                            >  SRR4302542.5533070/1‑94 (MQ=60)

                                   TGCCGTCCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGC                                                             <  SRR4302542.4601551/94‑1 (MQ=60)

                                    GCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCG                                                            >  SRR4302542.5086900/1‑94 (MQ=60)

                                    GCCGTGCAAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCG                                                            <  SRR4302542.5243775/94‑1 (MQ=60)

                                      CGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGAT                                                          <  SRR4302542.1938792/94‑1 (MQ=60)

                                       GTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATA                                                         <  SRR4302542.6915168/94‑1 (MQ=60)

                                       GTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATA                                                         >  SRR4302542.2173220/1‑94 (MQ=60)

                                          CCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGC                                                     <  SRR4302542.1995782/94‑1 (MQ=60)

                                           CAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGC                                                     >  SRR4302542.1656854/1‑94 (MQ=60)

                                           CAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGC                                                     >  SRR4302542.1161464/1‑94 (MQ=60)

                                           CAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGC                                                     <  SRR4302542.4628295/94‑1 (MQ=60)

                                           CAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGC                                                     >  SRR4302542.1686533/1‑94 (MQ=60)

                                           CAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCG                                                    >  SRR4302542.3477874/1‑94 (MQ=60)

                                           CAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCG                                                    >  SRR4302542.2375703/1‑94 (MQ=60)

                                            AAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCG                                                    >  SRR4302542.1332859/1‑94 (MQ=60)

                                            AAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCG                                                    <  SRR4302542.6768036/94‑1 (MQ=60)

                                             AAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGA                                                   >  SRR4302542.6071368/1‑94 (MQ=60)

                                              AGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAG                                                  <  SRR4302542.2063328/94‑1 (MQ=60)

                                               GCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGA                                                 >  SRR4302542.3660499/1‑94 (MQ=60)

                                                CCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGAT                                                >  SRR4302542.5829197/1‑94 (MQ=60)

                                                 CAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATC                                               >  SRR4302542.2371918/1‑94 (MQ=60)

                                                 CAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATC                                               <  SRR4302542.5324639/94‑1 (MQ=60)

                                                  AGGGCAGCTACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCA                                              >  SRR4302542.2363112/1‑94 (MQ=60)

                                                  AGGGCAGCGATTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCA                                              >  SRR4302542.5278822/1‑94 (MQ=60)

                                                  AGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCA                                              >  SRR4302542.3938333/1‑94 (MQ=60)

                                                   GGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAG                                             <  SRR4302542.7143955/94‑1 (MQ=60)

                                                   GGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAG                                             <  SRR4302542.2714725/94‑1 (MQ=60)

                                                    GGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGC                                            <  SRR4302542.7226528/94‑1 (MQ=60)

                                                     GCAGCGACTGCAACAGCGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCG                                           <  SRR4302542.7255030/94‑1 (MQ=60)

                                                     GCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCG                                           >  SRR4302542.68392/1‑94 (MQ=60)

                                                     GCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCG                                           >  SRR4302542.2645519/1‑94 (MQ=60)

                                                      CAGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGC                                          >  SRR4302542.4209703/1‑94 (MQ=60)

                                                       AGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCT                                         >  SRR4302542.7584631/1‑94 (MQ=60)

                                                       AGCGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCT                                         <  SRR4302542.2116121/94‑1 (MQ=60)

                                                        GCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTAC                                       <  SRR4302542.1056763/94‑1 (MQ=60)

                                                         CGACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTAC                                       <  SRR4302542.3595704/94‑1 (MQ=60)

                                                         CGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACG                                      <  SRR4302542.2248053/94‑1 (MQ=60)

                                                          gcctcCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACG                                      <  SRR4302542.5452521/89‑1 (MQ=60)

                                                          GACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACG                                      >  SRR4302542.5671701/1‑94 (MQ=60)

                                                          GACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACG                                      <  SRR4302542.5244993/94‑1 (MQ=60)

                                                          GACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGG                                     <  SRR4302542.5303556/94‑1 (MQ=60)

                                                           ACTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGG                                     >  SRR4302542.3060137/1‑94 (MQ=60)

                                                            CTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAATGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGG                                    >  SRR4302542.787503/1‑94 (MQ=60)

                                                            CTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGG                                    >  SRR4302542.6576852/1‑94 (MQ=60)

                                                            CTGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGG                                    >  SRR4302542.3053493/1‑94 (MQ=60)

                                                            CTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGC                                   >  SRR4302542.7179530/1‑94 (MQ=60)

                                                             TGCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGC                                   >  SRR4302542.6343083/1‑94 (MQ=60)

                                                              GCAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCA                                  >  SRR4302542.3605045/1‑94 (MQ=60)

                                                              GCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAG                                 <  SRR4302542.4133339/94‑1 (MQ=60)

                                                              CCAACACCGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCA                                  <  SRR4302542.2156730/94‑1 (MQ=60)

                                                               CAACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAG                                 <  SRR4302542.4567360/94‑1 (MQ=60)

                                                               CAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGT                                >  SRR4302542.2410242/1‑94 (MQ=60)

                                                               CAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGT                                >  SRR4302542.1704945/1‑94 (MQ=60)

                                                                AACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGT                                >  SRR4302542.2330069/1‑94 (MQ=60)

                                                                AACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGT                                >  SRR4302542.2330070/1‑94 (MQ=60)

                                                                AACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGT                                >  SRR4302542.3319642/1‑94 (MQ=60)

                                                                AACAACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGT                                >  SRR4302542.5261456/1‑94 (MQ=60)

                                                                   AACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAAC                             <  SRR4302542.1926694/94‑1 (MQ=60)

                                                                   AACGCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAAC                             >  SRR4302542.196662/1‑94 (MQ=60)

                                                                   AACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACG                            >  SRR4302542.5570543/1‑94 (MQ=60)

                                                                   AACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACG                            >  SRR4302542.1117818/1‑94 (MQ=60)

                                                                   AACGCCCCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAAC                             <  SRR4302542.1238004/94‑1 (MQ=60)

                                                                     CGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTC                          >  SRR4302542.3518832/1‑94 (MQ=60)

                                                                      GCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTC                          >  SRR4302542.4334677/1‑94 (MQ=60)

                                                                      GCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTC                          <  SRR4302542.7034015/94‑1 (MQ=60)

                                                                      GCCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTC                          <  SRR4302542.7318281/94‑1 (MQ=60)

                                                                       CCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCA                         <  SRR4302542.2978144/94‑1 (MQ=60)

                                                                       CCGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCA                         <  SRR4302542.2714613/94‑1 (MQ=60)

                                                                       CCCCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCA                         <  SRR4302542.1810430/94‑1 (MQ=60)

                                                                        CGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAG                        <  SRR4302542.812307/94‑1 (MQ=60)

                                                                        CGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAG                        <  SRR4302542.4796448/94‑1 (MQ=60)

                                                                        CGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAG                        <  SRR4302542.5687775/94‑1 (MQ=60)

                                                                        CGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAG                        <  SRR4302542.2224665/94‑1 (MQ=60)

                                                                        CGCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAG                        >  SRR4302542.6628915/1‑94 (MQ=60)

                                                                         GCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGT                       >  SRR4302542.3559252/1‑94 (MQ=60)

                                                                         GCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGT                       >  SRR4302542.1560538/1‑94 (MQ=60)

                                                                         GCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGT                       >  SRR4302542.4205689/1‑94 (MQ=60)

                                                                         GCCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGT                       <  SRR4302542.1839519/94‑1 (MQ=60)

                                                                          CCGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTA                      <  SRR4302542.2338597/94‑1 (MQ=60)

                                                                           CGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAA                     <  SRR4302542.3836597/94‑1 (MQ=60)

                                                                           CGCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAA                     >  SRR4302542.942156/1‑94 (MQ=60)

                                                                            GCCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAA                    >  SRR4302542.2008730/1‑94 (MQ=60)

                                                                             CCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAAC                   <  SRR4302542.7272921/94‑1 (MQ=60)

                                                                             CCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAAC                   <  SRR4302542.4100487/94‑1 (MQ=60)

                                                                             CCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAAC                   <  SRR4302542.3866377/94‑1 (MQ=60)

                                                                             CCGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAAC                   <  SRR4302542.6497966/94‑1 (MQ=60)

                                                                              CGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACT                  >  SRR4302542.41580/1‑94 (MQ=60)

                                                                              CGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACT                  <  SRR4302542.4799561/94‑1 (MQ=60)

                                                                              CGTTAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACT                  >  SRR4302542.5425686/1‑94 (MQ=60)

                                                                              CGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTA                 >  SRR4302542.2677198/1‑94 (MQ=60)

                                                                                 TAACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACC               <  SRR4302542.2394170/94‑1 (MQ=60)

                                                                                  AACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCG              <  SRR4302542.516792/94‑1 (MQ=60)

                                                                                   ACGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGA             <  SRR4302542.2170157/94‑1 (MQ=60)

                                                                                    CGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGAT            <  SRR4302542.4163966/94‑1 (MQ=60)

                                                                                    CGCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGAT            >  SRR4302542.38915/1‑94 (MQ=60)

                                                                                     GCCGCCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATC           <  SRR4302542.3615971/94‑1 (MQ=60)

                                                                                       cgcCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCAT         <  SRR4302542.2535724/91‑1 (MQ=60)

                                                                                       cgcCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCAT         <  SRR4302542.947486/91‑1 (MQ=60)

                                                                                        gcCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATC        >  SRR4302542.2777731/3‑94 (MQ=60)

                                                                                        gcCCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATC        <  SRR4302542.3458647/92‑1 (MQ=60)

                                                                                        G‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCA       >  SRR4302542.7320008/1‑94 (MQ=60)

                                                                                        G‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCA       <  SRR4302542.1327527/94‑1 (MQ=60)

                                                                                        C‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCA       >  SRR4302542.5142289/1‑94 (MQ=60)

                                                                                        C‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCA       >  SRR4302542.1809666/1‑94 (MQ=60)

                                                                                        C‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCA       >  SRR4302542.2306958/1‑94 (MQ=60)

                                                                                          CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAA      >  SRR4302542.2415377/1‑94 (MQ=60)

                                                                                           CCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAAT     <  SRR4302542.3731268/94‑1 (MQ=60)

                                                                                           CCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAAT     <  SRR4302542.417808/94‑1 (MQ=60)

                                                                                            CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATA    <  SRR4302542.128234/94‑1 (MQ=60)

                                                                                            CCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATA    <  SRR4302542.7578118/94‑1 (MQ=60)

                                                                                             CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAA   <  SRR4302542.3587607/94‑1 (MQ=60)

                                                                                             CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAA   <  SRR4302542.4109650/94‑1 (MQ=60)

                                                                                             CCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAA   <  SRR4302542.1876837/94‑1 (MQ=60)

                                                                                              CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAAC  >  SRR4302542.3661651/1‑94 (MQ=60)

                                                                                              CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAAC  <  SRR4302542.765883/94‑1 (MQ=60)

                                                                                              CTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAAC  <  SRR4302542.6593393/94‑1 (MQ=60)

AGTTAAAGTCAGCAACAGCGCATTCCACGACTCTTTGCCGTGCCAAAGCCAGGGCAGCGACTGCAACAACGCCGCCGCCGTTAACGCCG‑CCCCCTGTAACAGCAAGGTGCGCCAGTCACGCTGATGGCGATAGCGCGAGATCAGCGCTACGGGCAGTAACGTCAGTAAACTACCGATCATCAATAAC  >  NC_000913/3847326‑3847512

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`