Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,876,595 |
G→C |
P385A (CCG→GCG) |
gyrB ← |
DNA gyrase subunit B |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,876,595 | 0 | G | C | 98.9%
| 770.4
/ NA
| 266 | P385A (CCG→GCG) | gyrB | DNA gyrase subunit B |
| Reads supporting (aligned to +/- strand): ref base G (3/0); new base C (119/143); total (123/143) |
| Fisher's exact test for biased strand distribution p-value = 9.63e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 283 total aligned reads displayed.
GATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGT > NC_000913/3876505‑3876687
|
gATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCCTTTTACGCGCGCGGCgcgccg > 1:4441346/1‑93 (MQ=255)
gATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACgcgccg > 2:3664415/1‑93 (MQ=255)
aTCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGTTTTTTCCCGCGCGACGcgccgc > 1:4742332/1‑93 (MQ=255)
tCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCt < 2:1002158/93‑1 (MQ=255)
gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTcac > 2:6739025/1‑93 (MQ=255)
gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcac > 2:5759606/1‑93 (MQ=255)
gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcac < 1:3623989/93‑1 (MQ=255)
gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcac < 1:2885154/93‑1 (MQ=255)
gTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTcac > 2:3532799/1‑93 (MQ=255)
ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACCCGCGCGACGCGCCCCCTcacc > 1:971607/1‑92 (MQ=255)
ttCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCCTctcc > 2:6570015/1‑90 (MQ=255)
tCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgg < 2:939964/93‑1 (MQ=255)
ccTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacggg < 2:4932038/93‑1 (MQ=255)
ccTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacggg < 2:2180220/93‑1 (MQ=255)
tGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggca < 2:539900/93‑1 (MQ=255)
tGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcacgggca < 1:380013/93‑1 (MQ=255)
tGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTcaccggca > 2:553146/1‑93 (MQ=255)
ggCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTGCCCTCGCGACGGGCCGCCTcacgggggg > 1:5914291/1‑90 (MQ=255)
aGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGCGGCGCGCCGCTTccccgggacggg > 1:5879259/1‑93 (MQ=255)
gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCacgggcacgggc < 2:2923627/93‑1 (MQ=255)
gTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCaccggcaccggc > 2:1420035/1‑93 (MQ=255)
tCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCAcgggcacgggca < 1:7076611/93‑1 (MQ=255)
gCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGgcagca < 1:463302/93‑1 (MQ=255)
gTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCCTTTCACGCGCGCGACGCGACCCTTCACGGGCACGGGGAGCATccg > 2:6183748/1‑91 (MQ=255)
gTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGa < 1:5436653/93‑1 (MQ=255)
tttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑t > 2:3986458/1‑93 (MQ=255)
tttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCCTCACGGGCCCGGGGAGCATCCA‑t > 1:3181014/1‑93 (MQ=255)
ttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑Ta < 2:7276644/93‑1 (MQ=255)
ttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑Ta < 2:2008788/93‑1 (MQ=255)
ttGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑Ta < 1:2105782/93‑1 (MQ=255)
tGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑Taa < 2:710440/93‑1 (MQ=255)
ccGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAAttt < 1:458194/93‑1 (MQ=255)
ccGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAAttt < 1:6486159/93‑1 (MQ=255)
ccGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAAttt < 2:211092/93‑1 (MQ=255)
cGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAAtttt < 1:1210402/93‑1 (MQ=255)
cGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAAtttt < 1:7002147/93‑1 (MQ=255)
cGGCAGGCCCACTAAGTAGAGCGCTCCTTTACGGCGGGTCATTTCACGGGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAAtttt < 1:7292301/93‑1 (MQ=255)
acAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGc > 2:1538897/2‑93 (MQ=255)
aGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGCCGCGCCCCCTCACCGGCACGGGCAGCACCGA‑TAATTTTTCCa > 1:6040152/1‑93 (MQ=255)
ggCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCaa < 1:4859086/93‑1 (MQ=255)
ggCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCACCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCaa < 1:6219651/93‑1 (MQ=255)
gCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGATTTTACCCGCGCGGCGCGCCGCCTCACCGGGACGGGGCGGAACGA‑TAAATTTTTCAAc > 1:1399655/1‑93 (MQ=255)
cccGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAAcc < 2:5158822/93‑1 (MQ=255)
ccGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCa > 2:4598669/1‑93 (MQ=255)
ccGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCa < 1:3425726/93‑1 (MQ=255)
ccGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCa < 2:4441479/93‑1 (MQ=255)
cGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCAc < 1:686983/93‑1 (MQ=255)
gCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACg > 2:2559733/1‑93 (MQ=255)
gCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCGCTTCACCGGGACGGGCAGCATCCA‑TAATTTTTCCAACCAcc > 1:3390944/1‑92 (MQ=255)
cTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACCGGCAGCATCGA‑TAATTTTGCCAAACACGa > 2:390554/1‑93 (MQ=255)
cTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGGGACGCGCCGCTTCCCGGGCACGGGCAGCAACGA‑TAAATTTTCCAACCACGa > 1:7148433/1‑93 (MQ=255)
tAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAAATTTTCCAACCACGAt > 2:5019479/1‑93 (MQ=255)
tAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGCCGCGCCGCCTCACGGGCACGGGCAGCATCGA‑TAATTTTTCCAACCACGAt > 1:7428006/1‑93 (MQ=255)
gAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGACGCGCCCCTTCACGGGCACGGGCAGCATCGA‑TAATTTTTTCCACCACGAttttttc > 1:426683/1‑90 (MQ=255)
aGCGCACCTTTACGGCGGGTCATTTCCCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTcgcg > 2:6671949/1‑93 (MQ=255)
gcgcACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACCGGCAGCATCGA‑TAATTTTGCCAAACACGATTTTCGCGt > 2:6884323/1‑93 (MQ=255)
gcACCTTTACGGCGGGGCATTTTACGCGCGCGGCGCGCCGCTTCACGGGCGCGGGCCGCATCGA‑TAATTTTTGCAACCACGATTTTTGCGTCg > 1:5950478/1‑93 (MQ=255)
cACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCgg < 2:1456618/93‑1 (MQ=255)
cACCTTTACGGCGGCTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCgg < 2:4376074/93‑1 (MQ=255)
aCCTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGt < 2:4276029/93‑1 (MQ=255)
aCCTTTACGGCGGGGCATTTCACGCGCGGGACGCGCCCCTTTACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTTGCGTCTGt > 2:3086060/1‑93 (MQ=255)
ccTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCgggt > 2:5853273/1‑91 (MQ=255)
cTTTACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTg < 1:3252802/93‑1 (MQ=255)
tttACGGCGGGGCATTTTACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTTCCAACCACGATTTTTGCGTCGGTTgg > 1:1101500/1‑93 (MQ=255)
ttACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTggg < 2:1902188/93‑1 (MQ=255)
tACGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGt < 2:1756580/93‑1 (MQ=255)
aCGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtt < 1:4903694/93‑1 (MQ=255)
aCGGCGGGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGtt < 2:644060/93‑1 (MQ=255)
gcggGTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTc > 1:2699210/1‑93 (MQ=255)
gggTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCca < 1:1200848/93‑1 (MQ=255)
gTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagc > 2:3801381/1‑93 (MQ=255)
gTCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagc > 2:4687580/1‑93 (MQ=255)
tCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca < 2:2378969/93‑1 (MQ=255)
tCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca < 1:1765509/93‑1 (MQ=255)
tCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca > 2:7345970/1‑93 (MQ=255)
tCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca > 1:6636691/1‑93 (MQ=255)
tCATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagca > 2:5298573/1‑93 (MQ=255)
cATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagcag < 2:1110690/93‑1 (MQ=255)
cATTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCcagcag < 1:406939/93‑1 (MQ=255)
aTTTCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAgg < 2:5699137/93‑1 (MQ=255)
tttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGt > 2:2291249/1‑93 (MQ=255)
tttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGt < 1:1804400/93‑1 (MQ=255)
tttCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGt > 1:2256749/1‑93 (MQ=255)
tCACGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAt < 2:849735/93‑1 (MQ=255)
aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc < 2:2706555/93‑1 (MQ=255)
aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc < 2:5256733/93‑1 (MQ=255)
aCGCGCGCGACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTc < 1:2785851/93‑1 (MQ=255)
cgcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCt < 1:1858544/93‑1 (MQ=255)
cgcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCt < 1:3029379/93‑1 (MQ=255)
gcgcgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTg > 1:5058906/1‑93 (MQ=255)
cgcgACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCca > 1:2986423/1‑93 (MQ=255)
cgACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagc < 1:5633816/93‑1 (MQ=255)
gACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca > 2:3353206/1‑93 (MQ=255)
gACGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagca < 1:87450/93‑1 (MQ=255)
aCGCGCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCcagcag > 1:3857242/1‑93 (MQ=255)
cgcgCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgt < 1:5211073/93‑1 (MQ=255)
cgcgCCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgt < 1:4153509/93‑1 (MQ=255)
gcgccgCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgtt < 2:7170321/93‑1 (MQ=255)
gcgccgCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAgtt < 1:1018217/93‑1 (MQ=255)
cggcgCCTCAAGGGGCCGGGCAATATCCATTATTTTTGCAAACCCCG‑TTTTTGCGGCGGTTTGGGTTTCCAGCAGGTATTCTGCCAGCAgttc < 2:7475696/93‑1 (MQ=255)
|
GATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGACGCGGCGCTTCACGGGCACGGGCAGCATCGA‑TAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGT > NC_000913/3876505‑3876687
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT > NC_000913/3876504‑3876688
|
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCCTTTTACGCGCGCGG‑C‑GCGCCG > SRR4302542.4484931/1‑94 (MQ=60)
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCG < SRR4302542.721579/94‑1 (MQ=60)
GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCGTTTTACGCGCGCGG‑C‑GCGCCG > SRR4302542.2729563/1‑94 (MQ=60)
ATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCT < SRR4302542.4178313/94‑1 (MQ=60)
ATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCT < SRR4302542.1303364/94‑1 (MQ=60)
CGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGTGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTC > SRR4302542.1086370/1‑94 (MQ=60)
CGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTC < SRR4302542.7094899/94‑1 (MQ=60)
GCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCA < SRR4302542.3598634/94‑1 (MQ=60)
CGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCAC < SRR4302542.2694435/94‑1 (MQ=60)
CGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTCACGCCCGCGG‑C‑GCGCCGCCTCAC > SRR4302542.11533/1‑94 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACG < SRR4302542.2912860/94‑1 (MQ=60)
GTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACG < SRR4302542.3657746/94‑1 (MQ=60)
TTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGATTTTACGCGCGCGG‑C‑GCGCCGCCTCACCG > SRR4302542.4768473/1‑94 (MQ=60)
TCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGG < SRR4302542.4943800/94‑1 (MQ=60)
TCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGG < SRR4302542.6055057/94‑1 (MQ=60)
TCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGG < SRR4302542.1885995/94‑1 (MQ=60)
TGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCAC < SRR4302542.5960465/94‑1 (MQ=60)
TGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCAC < SRR4302542.383319/94‑1 (MQ=60)
TGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGG‑C‑GCGCCGCGTCACGGGCCC > SRR4302542.5971608/1‑94 (MQ=60)
gcggtctgcagtttggccgggaggcccggttaagccgggcccacttttcgggGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGG < SRR4302542.7059930/42‑1 (MQ=60)
CAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGCGG‑C‑GCGCCGCTTCCCCGGGACGGG > SRR4302542.5936256/1‑94 (MQ=60)
AGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGG‑C‑GCGCCGCCTCACGGGCACGGGG > SRR4302542.3206455/1‑94 (MQ=60)
TCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAG < SRR4302542.7146061/94‑1 (MQ=60)
CTGCCAGGTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGC < SRR4302542.3282856/94‑1 (MQ=60)
GCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCAT < SRR4302542.5978951/94‑1 (MQ=60)
GCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCAT < SRR4302542.467311/94‑1 (MQ=60)
CCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGGATTTCACGCGCGCGG‑C‑GCGCCGCTTCACCGGCACCGGCAGCATC > SRR4302542.1857671/1‑94 (MQ=60)
GTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTTATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGAT < SRR4302542.4137053/94‑1 (MQ=60)
GTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGAT < SRR4302542.5489475/94‑1 (MQ=60)
GTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGG‑C‑GCGCCGCCTCACGGGCCCGGGGAGCATCCAT > SRR4302542.3211154/1‑94 (MQ=60)
TTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAA < SRR4302542.2123957/94‑1 (MQ=60)
TGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGA‑C‑GCGCCGCCTCACCGGGACGGGCAGCATCGATAAT > SRR4302542.2146999/1‑94 (MQ=60)
GCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATT < SRR4302542.980720/94‑1 (MQ=60)
CCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTT < SRR4302542.6550072/94‑1 (MQ=60)
CCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTT < SRR4302542.462153/94‑1 (MQ=60)
CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTG < SRR4302542.7070929/94‑1 (MQ=60)
CGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTG < SRR4302542.1220796/94‑1 (MQ=60)
CGGCAGGCCCACTAAGTAGAGCGCTCCTTTACGGCGGGTCATTTCACGGGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTG < SRR4302542.7363777/94‑1 (MQ=60)
GCAGGCCCGCTAAGTCGAGCGCGCCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCC < SRR4302542.7265654/94‑1 (MQ=60)
CAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGC‑C‑GCGCCCCCTCACCGGCACGGGCAGCACCGATAATTTTTCCA > SRR4302542.6098624/1‑94 (MQ=55)
AGGCCGGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCCCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAA < SRR4302542.7460431/94‑1 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAA < SRR4302542.6738134/94‑1 (MQ=60)
AGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACCCGCGCGA‑C‑GCGCCGCCTCACGGGCACGGGCAGCATCGATAATTTTtccca > SRR4302542.7170136/1‑89 (MQ=60)
GGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAAC < SRR4302542.4906411/94‑1 (MQ=60)
GGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCACCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAAC < SRR4302542.6280906/94‑1 (MQ=60)
GGCCCGCTAAGTCGAGCGCACC‑TTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACC < SRR4302542.3612724/94‑1 (MQ=60)
CCCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGC‑C‑GCGCCGCTTCCCCGGCACGGGCAGCATCGATAATTTTTCCAACCA > SRR4302542.7118786/1‑94 (MQ=60)
CCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAC < SRR4302542.2735541/94‑1 (MQ=60)
CCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCAC < SRR4302542.3457812/94‑1 (MQ=60)
CCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTTCGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTttcaaacac > SRR4302542.4469198/1‑85 (MQ=60)
CCGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGG‑C‑GCGCCGCTTCCCCGGCACGGGCAGCATCGATAATTTTTCCAACCAC > SRR4302542.1218579/1‑94 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACG < SRR4302542.692912/94‑1 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCTCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACG > SRR4302542.6283148/1‑94 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTttccaacacc > SRR4302542.1749529/1‑84 (MQ=60)
CGCTAAGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACCGGGACGGGCAGCATCCATAATTTTTCCAACCACC > SRR4302542.3422766/1‑94 (MQ=60)
GCTAAGTCGAGCGCACCTTTACGGCGGGGCCTTTTACGCGCGGGA‑C‑GCGCCGCTTCCCGGGCACGGGCAGCAACGATAAATTTTCCAACCACGA > SRR4302542.7218571/1‑94 (MQ=53)
CTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGC‑C‑GCGCCGCCTCACGGGCACGGGCAGCATCGATAATTTTTCCAACCACGAT > SRR4302542.7500694/1‑94 (MQ=60)
CTAAGTCGAGCGCACCTTTACGGCGGGGCATTTTACCCGCGCGA‑C‑GCGCCGCTTCCCGGGCACGGGCAGCATCGATAATTTTTCCAAACACGAT > SRR4302542.3055647/1‑94 (MQ=60)
TAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATT < SRR4302542.4512524/94‑1 (MQ=60)
AGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTT < SRR4302542.7461688/94‑1 (MQ=60)
AGTCGAGCGCACCTTTACGGCGGGGGATTTTACGCGCGCGA‑C‑GCGCCGCTTCACGGGGACGGGCGGCATCGATAAatttttcaaacaccatttt > SRR4302542.1579840/1‑75 (MQ=54)
AGTCGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTTCCACCACGATTTT > SRR4302542.1824532/1‑94 (MQ=60)
TCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCG < SRR4302542.5697863/94‑1 (MQ=60)
CGAGCGCACCTTTACGGCGGGGCATTTCACGCGCGCGA‑C‑GCGCCCCTTCACGGGCACGGGCAGCATCGATAATTTTttccaccacgattttttc > SRR4302542.430369/1‑76 (MQ=60)
GAGCGCACCTTTACGGCGGGGCATTTTACGCGCGCGG‑C‑GCGCCGCTTCACGGGCACGGGgcgcatcggtaaattttgcaaccaccatttttcgc > SRR4302542.2452756/1‑59 (MQ=49)
gcccCCTTTACGGCGGGTCATTTCACGCGCGCGACC‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTC < SRR4302542.6285005/90‑1 (MQ=60)
gcCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑CGGCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTC < SRR4302542.1211879/92‑1 (MQ=60)
CGCCCCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCG < SRR4302542.6589960/94‑1 (MQ=60)
CGCACCTTTACGGCGGGGCATTTTACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTCCAAACACCATTTTTGCGTCG > SRR4302542.470180/1‑94 (MQ=60)
CGCACCTTTACGGCGGGGCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACCATTTTCGCGTCG > SRR4302542.3740955/1‑94 (MQ=60)
GCACCTTTACGGCGGGGCATTTTACCCGCGCGA‑C‑GCGCCGCTTCACCGGCACGGGCAGCATCGATAATTTTTCCAACCACGATTTTCGCGTCGG > SRR4302542.3194418/1‑94 (MQ=60)
ACCTTTACGGCGGGTCATTTCACGCGTGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTT < SRR4302542.7604460/94‑1 (MQ=60)
ACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTT < SRR4302542.3884248/94‑1 (MQ=60)
ACCTTTACGGCGGGGCATTTTACGCGCGCGG‑C‑GCGCCGCCTCACGGGCACGGGCAGCATCGATAATTTTTCCAACCACGATTTTTGCGTCGGTT > SRR4302542.3710714/1‑94 (MQ=60)
CCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTG < SRR4302542.62618/94‑1 (MQ=60)
CTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGG < SRR4302542.3283524/94‑1 (MQ=60)
CTTTACGGCGGGGCATTTTACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTTCCAACCACGATTTTTGCGTCGGTTGG > SRR4302542.1110920/1‑94 (MQ=60)
TTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGT < SRR4302542.7174488/94‑1 (MQ=60)
TACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTT < SRR4302542.3445446/94‑1 (MQ=60)
ACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTT < SRR4302542.4951396/94‑1 (MQ=60)
ACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTT < SRR4302542.5650743/94‑1 (MQ=60)
GGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTC > SRR4302542.2725243/1‑94 (MQ=60)
GGCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGATTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTC > SRR4302542.6054706/1‑94 (MQ=60)
GCGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTTGCGTCGGTTGGGTTTTCC > SRR4302542.4337233/1‑94 (MQ=60)
CGGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCA < SRR4302542.540136/94‑1 (MQ=60)
GGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG < SRR4302542.5684840/94‑1 (MQ=60)
GGGTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAG < SRR4302542.1211187/94‑1 (MQ=60)
GTCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCA > SRR4302542.6702108/1‑94 (MQ=60)
TCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAG < SRR4302542.1780821/94‑1 (MQ=60)
TCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAG < SRR4302542.7337521/94‑1 (MQ=60)
TCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAG < SRR4302542.3944423/94‑1 (MQ=60)
TCATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAG < SRR4302542.2938349/94‑1 (MQ=60)
CATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG < SRR4302542.4587866/94‑1 (MQ=60)
CATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG < SRR4302542.410455/94‑1 (MQ=60)
CATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG < SRR4302542.6130244/94‑1 (MQ=60)
CATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGG < SRR4302542.2862267/94‑1 (MQ=60)
ATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGT > SRR4302542.4074764/1‑94 (MQ=60)
ATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGT < SRR4302542.5056887/94‑1 (MQ=60)
ATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGT > SRR4302542.2276149/1‑94 (MQ=60)
ATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGT > SRR4302542.3389882/1‑94 (MQ=60)
ATTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGT > SRR4302542.4666644/1‑94 (MQ=60)
TTTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTA < SRR4302542.1820038/94‑1 (MQ=60)
TTTCACGCGCGCGA‑C‑GCCCCGCTTGACGGGCACGGGCAGCATCGATAATTTTGCCACCCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTA < SRR4302542.942724/94‑1 (MQ=60)
TTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATTATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAT < SRR4302542.898883/94‑1 (MQ=60)
TTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAT < SRR4302542.5165029/94‑1 (MQ=60)
TTCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTAT < SRR4302542.3262388/94‑1 (MQ=60)
TCACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATT < SRR4302542.2970405/94‑1 (MQ=60)
ACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT < SRR4302542.573587/94‑1 (MQ=60)
ACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT < SRR4302542.2812669/94‑1 (MQ=60)
ACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT > SRR4302542.2177493/1‑94 (MQ=60)
ACGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCT < SRR4302542.1191899/94‑1 (MQ=60)
CGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG < SRR4302542.3058291/94‑1 (MQ=60)
CGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG < SRR4302542.1279222/94‑1 (MQ=60)
CGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG < SRR4302542.1874600/94‑1 (MQ=60)
CGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTG > SRR4302542.5108028/1‑94 (MQ=60)
CGCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTACTCTG < SRR4302542.7038602/94‑1 (MQ=60)
GCGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGC < SRR4302542.2071946/94‑1 (MQ=60)
CGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCC > SRR4302542.6647853/1‑94 (MQ=60)
CGCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCC > SRR4302542.5296046/1‑94 (MQ=60)
GCGCGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCA > SRR4302542.3015012/1‑94 (MQ=60)
CGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA > SRR4302542.5255628/1‑94 (MQ=60)
CGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA < SRR4302542.5688520/94‑1 (MQ=60)
CGA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCA > SRR4302542.4835764/1‑94 (MQ=60)
GA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAG > SRR4302542.3895341/1‑94 (MQ=60)
GA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAG < SRR4302542.88178/94‑1 (MQ=60)
GA‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAG > SRR4302542.3356483/1‑94 (MQ=60)
A‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGT < SRR4302542.1805159/94‑1 (MQ=60)
A‑C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGT > SRR4302542.4866937/1‑94 (MQ=60)
C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT < SRR4302542.5261750/94‑1 (MQ=60)
C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT < SRR4302542.4194403/94‑1 (MQ=60)
C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT > SRR4302542.161749/1‑94 (MQ=60)
C‑GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTT > SRR4302542.3054914/1‑94 (MQ=60)
GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTC < SRR4302542.1026989/94‑1 (MQ=60)
GCGCCGCTTCACGGGCACGGGCAGCATCGATAATTTCGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGGATTCTGCCAGCAGTTC > SRR4302542.1435825/1‑94 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG > SRR4302542.856154/1‑94 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302542.3839547/94‑1 (MQ=60)
CGCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCG < SRR4302542.2527347/94‑1 (MQ=60)
GCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGT < SRR4302542.6088816/94‑1 (MQ=60)
GCCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTCTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGT > SRR4302542.2833369/1‑94 (MQ=60)
CCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT > SRR4302542.6895875/1‑94 (MQ=60)
CCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT < SRR4302542.5794489/94‑1 (MQ=60)
CCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT < SRR4302542.3036807/94‑1 (MQ=60)
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GGATCGCGTTCCTGGCAGTCTGCCAGTTTGCCCGGCAGGCCCGCTAAGTCGAGCGCACCTTTACGGCGGGTCATTTCACGCGCGCGA‑C‑GCGGCGCTTCACGGGCACGGGCAGCATCGATAATTTTGCCAACCACGATTTTCGCGTCGGTTGGGTTTTCCAGCAGGTATTCTGCCAGCAGTTCGTT > NC_000913/3876504‑3876688
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 5 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
