Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
1061 |
294.1 |
15065038 |
98.6% |
14854127 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,896,435 |
G→A |
A196V (GCG→GTG) |
b3718 ← |
putative isomerase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,896,435 | 0 | G | A | 86.6%
| 803.3
/ 73.7
| 292 | A196V (GCG→GTG) | b3718 | putative isomerase |
| Reads supporting (aligned to +/- strand): ref base G (19/20); new base A (141/111); total (161/131) |
| Fisher's exact test for biased strand distribution p-value = 4.89e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.71e-01 |
Only 100 of 297 total aligned reads displayed.
ATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCC > NC_000913/3896345‑3896526
|
tCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCacgc < 2:851547/93‑1 (MQ=255)
tCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCacgc > 1:4790251/1‑93 (MQ=255)
aGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCAcgccg < 1:494050/93‑1 (MQ=255)
cGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCt < 1:522528/93‑1 (MQ=255)
gAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTg > 1:5551296/1‑93 (MQ=255)
gAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTg > 1:3813554/1‑93 (MQ=255)
aGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGAc > 2:6445978/1‑93 (MQ=255)
ggATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACa > 1:2050692/1‑93 (MQ=255)
ggATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACa < 1:3671087/93‑1 (MQ=255)
ggATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACa > 2:4263280/1‑93 (MQ=255)
gATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACaa > 2:3227419/1‑93 (MQ=255)
gATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACaa > 1:5773613/1‑93 (MQ=255)
gATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACaa < 2:7324640/93‑1 (MQ=255)
gATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACaa > 2:1408264/1‑93 (MQ=255)
gCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTa < 1:6699680/93‑1 (MQ=255)
aGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATc < 2:3069024/93‑1 (MQ=255)
aGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATc < 2:4713305/93‑1 (MQ=255)
gCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCa < 1:7201193/93‑1 (MQ=255)
tGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGc > 2:1237412/1‑93 (MQ=255)
cAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCaa < 1:5347149/93‑1 (MQ=255)
acacGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGt < 2:5975564/93‑1 (MQ=255)
acacGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGt > 2:6609838/1‑93 (MQ=255)
cacGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGtt < 2:4498959/93‑1 (MQ=255)
cGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGtttt < 1:3134190/93‑1 (MQ=255)
gAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTc < 2:6311224/93‑1 (MQ=255)
aGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTcgc > 2:553595/1‑93 (MQ=255)
gCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTcgcc > 1:2671955/1‑93 (MQ=255)
tGGAACATCTTCGGTAACCGGACCTCGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTcgccgc > 2:6265718/1‑93 (MQ=255)
gAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCa < 1:5620530/93‑1 (MQ=255)
aCATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatg > 1:1094764/1‑93 (MQ=255)
cATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatga > 2:1572878/1‑93 (MQ=255)
cATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatga < 1:4469529/93‑1 (MQ=255)
cATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatga < 2:3316576/93‑1 (MQ=255)
cATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatga > 2:2173084/1‑93 (MQ=255)
aTCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatgat < 2:3927694/93‑1 (MQ=255)
aTCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatgat > 2:3660653/1‑93 (MQ=255)
tCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatgatg < 2:4970355/93‑1 (MQ=255)
tCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatgatg > 1:1479735/1‑93 (MQ=255)
tCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatgatg > 1:1826553/1‑93 (MQ=255)
tCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCatgatg > 2:2232743/1‑93 (MQ=255)
cTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGc < 1:7067351/93‑1 (MQ=255)
ttCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCt > 1:636694/1‑93 (MQ=255)
tCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCtt > 1:6733909/1‑93 (MQ=255)
ggTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCtttt < 1:5931472/93‑1 (MQ=255)
ggTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCtttt < 1:7270629/93‑1 (MQ=255)
gTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTCCCCGCGCCGCTGACAATTATCAGCAAGTGTTTCGCCGCCATGATGCTTTTc < 1:3462614/93‑1 (MQ=255)
gTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTc > 1:4186870/1‑93 (MQ=255)
gTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTc > 1:1318048/1‑93 (MQ=255)
gTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTc < 2:7022144/93‑1 (MQ=255)
tAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCg > 2:2447774/1‑93 (MQ=255)
aaCCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCgg < 2:5821655/93‑1 (MQ=255)
aCCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGc > 2:2924252/1‑93 (MQ=255)
aCCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGc > 1:82823/1‑93 (MQ=255)
aCCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGc > 1:2782445/1‑93 (MQ=255)
ccGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGcc < 2:3435079/93‑1 (MQ=255)
ccGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGcc > 2:5801849/1‑93 (MQ=255)
cGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGccc < 1:1027806/93‑1 (MQ=255)
cGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGccc > 2:1177391/1‑93 (MQ=255)
ggACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGcccc < 1:1810623/93‑1 (MQ=255)
ggACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGcccc > 2:4072863/1‑93 (MQ=255)
gACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCa > 2:1116019/1‑93 (MQ=255)
gACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCa > 1:2120782/1‑93 (MQ=255)
aCCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCAt < 2:2761944/93‑1 (MQ=255)
ccTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATc < 2:5478715/93‑1 (MQ=255)
cTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCg > 1:2342429/1‑93 (MQ=255)
ttGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGt < 2:2522971/93‑1 (MQ=255)
gCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCa < 1:7115706/93‑1 (MQ=255)
gCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCa < 2:5665651/93‑1 (MQ=255)
gCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCa < 2:6839437/93‑1 (MQ=255)
cAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCAc > 1:1243434/1‑93 (MQ=255)
aGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACg > 2:187991/1‑93 (MQ=255)
aGAACATTTTTCAGCGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACg > 1:6148063/1‑93 (MQ=255)
aaCATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTa < 1:2881311/93‑1 (MQ=255)
aCATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAg > 2:3821151/1‑93 (MQ=255)
cATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGc > 2:7108235/1‑93 (MQ=255)
cATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGc > 1:3088050/1‑93 (MQ=255)
aTTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCt < 2:3500052/93‑1 (MQ=255)
tttttCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTg > 1:6920993/1‑93 (MQ=255)
tttttCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAATTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTg > 1:5124204/1‑93 (MQ=255)
ttCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCa < 2:1622910/93‑1 (MQ=255)
ttCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTGTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCa < 1:5681343/93‑1 (MQ=255)
cAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAgg > 1:3479502/1‑93 (MQ=255)
gTGACTGCGCTTTACCCACGCCGCTGACAATTATAAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTAACGTAGCTGTCAGGCa > 1:4644446/1‑93 (MQ=255)
tGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCAc < 1:6528535/93‑1 (MQ=255)
ccTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTa > 2:4860967/1‑93 (MQ=255)
tGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAAc < 2:53406/93‑1 (MQ=255)
tGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAAc > 2:4443418/1‑93 (MQ=255)
gcgcTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACg > 1:3552986/1‑93 (MQ=255)
gcgcTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACg > 1:1517031/1‑93 (MQ=255)
gcTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGaa > 2:1334520/1‑93 (MQ=255)
gcTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGaa > 1:4369575/1‑93 (MQ=255)
gcTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGaa < 2:2157528/93‑1 (MQ=255)
cTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGaaa > 2:1705860/1‑93 (MQ=255)
tttACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGaaaa > 1:2535035/1‑93 (MQ=255)
tttACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGaaaa > 1:6658260/1‑93 (MQ=255)
ttACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAg > 2:5060990/1‑93 (MQ=255)
ttACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAg < 1:4991276/93‑1 (MQ=255)
ttACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAg > 2:2367367/1‑93 (MQ=255)
tACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGt < 1:400831/93‑1 (MQ=255)
cgcgCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTcgcc > 2:1515543/1‑93 (MQ=255)
|
ATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCC > NC_000913/3896345‑3896526
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
ACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCCG > NC_000913/3896342‑3896527
|
TCCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCA < SRR4302542.7358232/94‑1 (MQ=60)
AACATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCA > SRR4302542.485573/1‑94 (MQ=60)
CCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCAC > SRR4302542.4644496/1‑94 (MQ=60)
CCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCAC > SRR4302542.3128989/1‑94 (MQ=60)
CATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACG < SRR4302542.5356207/94‑1 (MQ=60)
ATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGC > SRR4302542.4836929/1‑94 (MQ=60)
ATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGC > SRR4302542.2118194/1‑94 (MQ=60)
AGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGC < SRR4302542.498307/94‑1 (MQ=60)
GCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCT < SRR4302542.3005235/94‑1 (MQ=60)
CGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTG > SRR4302542.3851278/1‑94 (MQ=60)
CGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTG > SRR4302542.5605234/1‑94 (MQ=60)
CGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTG < SRR4302542.527050/94‑1 (MQ=60)
GAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGA > SRR4302542.7288172/1‑94 (MQ=60)
AAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGAC < SRR4302542.5187992/94‑1 (MQ=60)
AGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACA > SRR4302542.3559193/1‑94 (MQ=60)
AGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACA > SRR4302542.2068414/1‑94 (MQ=60)
GGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAA > SRR4302542.5829657/1‑94 (MQ=60)
GGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAA < SRR4302542.3706422/94‑1 (MQ=60)
GATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAAT < SRR4302542.2716948/94‑1 (MQ=60)
GATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAAT > SRR4302542.2837468/1‑94 (MQ=60)
ATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATT < SRR4302542.2787878/94‑1 (MQ=60)
GCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTAT < SRR4302542.2374155/94‑1 (MQ=60)
GCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTAT < SRR4302542.7156956/94‑1 (MQ=60)
GCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTAT < SRR4302542.6765696/94‑1 (MQ=60)
GCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTAT > SRR4302542.376111/1‑94 (MQ=60)
GCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTAT < SRR4302542.6171413/94‑1 (MQ=60)
GCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTAT < SRR4302542.5015188/94‑1 (MQ=60)
AGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCA < SRR4302542.5548016/94‑1 (MQ=60)
GCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAG < SRR4302542.7271866/94‑1 (MQ=60)
GCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAG < SRR4302542.1290323/94‑1 (MQ=60)
TGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCA > SRR4302542.3997780/1‑94 (MQ=60)
TGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCA < SRR4302542.5954984/94‑1 (MQ=60)
ctgaaaaatgttCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAA > SRR4302542.1592322/13‑94 (MQ=60)
GCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAA < SRR4302542.1523073/94‑1 (MQ=60)
CAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAG < SRR4302542.6294943/94‑1 (MQ=60)
CAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAG > SRR4302542.3432913/1‑94 (MQ=60)
CAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAG < SRR4302542.5399089/94‑1 (MQ=60)
AACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGT > SRR4302542.4841058/1‑94 (MQ=60)
AACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGT < SRR4302542.1396601/94‑1 (MQ=60)
AACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGT > SRR4302542.5658046/1‑94 (MQ=60)
AACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGT < SRR4302542.6767945/94‑1 (MQ=60)
ACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTT < SRR4302542.5772610/94‑1 (MQ=60)
ACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTT > SRR4302542.506453/1‑94 (MQ=60)
ACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTT > SRR4302542.642752/1‑94 (MQ=60)
CGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTT > SRR4302542.2695566/1‑94 (MQ=60)
CGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTT > SRR4302542.4451853/1‑94 (MQ=60)
CGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTT < SRR4302542.3163990/94‑1 (MQ=60)
GGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTC < SRR4302542.5836762/94‑1 (MQ=60)
GAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCG > SRR4302542.6986880/1‑94 (MQ=60)
GAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCG < SRR4302542.6494195/94‑1 (MQ=60)
AAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGC > SRR4302542.674601/1‑94 (MQ=60)
AGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCC > SRR4302542.129593/1‑94 (MQ=60)
AGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCC > SRR4302542.2697738/1‑94 (MQ=60)
GCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCG < SRR4302542.7252308/94‑1 (MQ=60)
CTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGC > SRR4302542.7266911/1‑94 (MQ=60)
CTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGC > SRR4302542.7294223/1‑94 (MQ=60)
TGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCC > SRR4302542.3136988/1‑94 (MQ=60)
GGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCA > SRR4302542.2151391/1‑94 (MQ=60)
GGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCA > SRR4302542.1869717/1‑94 (MQ=60)
GAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCAT < SRR4302542.5675129/94‑1 (MQ=60)
AACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATG > SRR4302542.1104143/1‑94 (MQ=60)
CATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGAT < SRR4302542.6654356/94‑1 (MQ=60)
CATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGAT < SRR4302542.4513373/94‑1 (MQ=60)
CATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGAT > SRR4302542.5576960/1‑94 (MQ=60)
CATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGAT < SRR4302542.6837421/94‑1 (MQ=60)
CATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGAT < SRR4302542.7029708/94‑1 (MQ=60)
ATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATG > SRR4302542.1492502/1‑94 (MQ=60)
ATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATG > SRR4302542.1393471/1‑94 (MQ=60)
ATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATG < SRR4302542.3153932/94‑1 (MQ=60)
ATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATG > SRR4302542.670880/1‑94 (MQ=60)
ATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATG < SRR4302542.4227969/94‑1 (MQ=60)
ATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATG > SRR4302542.1842371/1‑94 (MQ=60)
ATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATG > SRR4302542.2132034/1‑94 (MQ=60)
CTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCT > SRR4302542.642171/1‑94 (MQ=60)
CTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCT < SRR4302542.7136717/94‑1 (MQ=60)
CTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCT > SRR4302542.82535/1‑94 (MQ=60)
CTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCT > SRR4302542.4375162/1‑94 (MQ=60)
TTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTT > SRR4302542.6800194/1‑94 (MQ=60)
TTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTT > SRR4302542.1890374/1‑94 (MQ=60)
GGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTC < SRR4302542.5988937/94‑1 (MQ=60)
GGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTC < SRR4302542.7156336/94‑1 (MQ=60)
GGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTC > SRR4302542.4228160/1‑94 (MQ=60)
GGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTC > SRR4302542.1329406/1‑94 (MQ=60)
GGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTC < SRR4302542.7341902/94‑1 (MQ=60)
GTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTCCCCGCGCCGCTGACAATTATCAGCAAGTGTTTCGCCGCCATGATGCTTTTCG < SRR4302542.3495039/94‑1 (MQ=60)
GTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCG > SRR4302542.6371246/1‑94 (MQ=60)
GTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCG < SRR4302542.1838167/94‑1 (MQ=60)
GTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCG > SRR4302542.5312610/1‑94 (MQ=60)
TAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGG > SRR4302542.5193246/1‑94 (MQ=60)
TAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGG < SRR4302542.7364001/94‑1 (MQ=60)
AACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGC > SRR4302542.1077558/1‑94 (MQ=60)
AACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGC > SRR4302542.83515/1‑94 (MQ=60)
AACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGC > SRR4302542.2809236/1‑94 (MQ=60)
AACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGC > SRR4302542.1184409/1‑94 (MQ=60)
AACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGC > SRR4302542.445601/1‑94 (MQ=60)
ACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCC > SRR4302542.1506152/1‑94 (MQ=60)
CCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCC > SRR4302542.4570059/1‑94 (MQ=60)
CGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCC < SRR4302542.1036666/94‑1 (MQ=60)
GGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCA < SRR4302542.1826314/94‑1 (MQ=60)
GGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCA > SRR4302542.2139085/1‑94 (MQ=60)
GGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCA > SRR4302542.1576449/1‑94 (MQ=60)
ACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATC < SRR4302542.3837836/94‑1 (MQ=60)
CCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCG > SRR4302542.2362490/1‑94 (MQ=60)
CCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCG > SRR4302542.2362711/1‑94 (MQ=60)
TTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTC > SRR4302542.5018806/1‑94 (MQ=60)
TGCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCA < SRR4302542.6779549/94‑1 (MQ=60)
GCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCAC < SRR4302542.7185556/94‑1 (MQ=60)
GCAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCAC > SRR4302542.1254120/1‑94 (MQ=60)
CAGAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACG < SRR4302542.468467/94‑1 (MQ=60)
CAGAACATTTTTCAGCGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACG > SRR4302542.6207550/1‑94 (MQ=60)
AGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGT > SRR4302542.6161108/1‑94 (MQ=60)
GAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTA < SRR4302542.4555170/94‑1 (MQ=60)
GAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTA > SRR4302542.4317441/1‑94 (MQ=60)
GAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTA > SRR4302542.2644976/1‑94 (MQ=60)
GAACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTA < SRR4302542.366937/94‑1 (MQ=60)
AACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAG > SRR4302542.950120/1‑94 (MQ=60)
AACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAG > SRR4302542.2360773/1‑94 (MQ=60)
AACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAG < SRR4302542.2908986/94‑1 (MQ=60)
ACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGC > SRR4302542.7082627/1‑94 (MQ=60)
ACATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGC > SRR4302542.3117441/1‑94 (MQ=60)
CATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCT < SRR4302542.3511324/94‑1 (MQ=60)
ATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTG > SRR4302542.5106628/1‑94 (MQ=60)
ATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTG > SRR4302542.6988941/1‑94 (MQ=60)
ATTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAATTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTG > SRR4302542.5173964/1‑94 (MQ=60)
TTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGT > SRR4302542.4973432/1‑94 (MQ=60)
TTTTTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGT > SRR4302542.3502033/1‑94 (MQ=60)
TTCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTGTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAG < SRR4302542.5736514/94‑1 (MQ=60)
TCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGG < SRR4302542.5335154/94‑1 (MQ=60)
TCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGG > SRR4302542.3512065/1‑94 (MQ=60)
TCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGG < SRR4302542.3227157/94‑1 (MQ=60)
TCAGTGCCTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGG < SRR4302542.6724920/94‑1 (MQ=60)
AGTGACTGCGCTTTACCCACGCCGCTGACAATTATAAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTAACGTAGCTGTCAGGCA > SRR4302542.4689859/1‑94 (MQ=60)
TGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACT < SRR4302542.6592881/94‑1 (MQ=60)
CTGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAAC > SRR4302542.2845886/1‑94 (MQ=60)
TGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACG > SRR4302542.3586191/1‑94 (MQ=60)
TGCGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACG > SRR4302542.1530134/1‑94 (MQ=60)
CGCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAA > SRR4302542.4412473/1‑94 (MQ=60)
GCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAA > SRR4302542.3649023/1‑94 (MQ=60)
GCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAA > SRR4302542.1553352/1‑94 (MQ=60)
GCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAA > SRR4302542.2922238/1‑94 (MQ=60)
GCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAA > SRR4302542.1177632/1‑94 (MQ=60)
GCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAA > SRR4302542.1827428/1‑94 (MQ=60)
GCTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAA > SRR4302542.5799940/1‑94 (MQ=60)
CTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAA > SRR4302542.6723857/1‑94 (MQ=60)
CTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAA > SRR4302542.2559628/1‑94 (MQ=60)
CTTTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAA > SRR4302542.3898892/1‑94 (MQ=60)
TTACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGT < SRR4302542.5039753/94‑1 (MQ=60)
TACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTC < SRR4302542.5697343/94‑1 (MQ=60)
TACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTC < SRR4302542.5697344/94‑1 (MQ=60)
TACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTC < SRR4302542.404293/94‑1 (MQ=60)
ACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCG < SRR4302542.4735528/94‑1 (MQ=60)
ACCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCG > SRR4302542.3556988/1‑94 (MQ=60)
CCCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGC > SRR4302542.863838/1‑94 (MQ=60)
CCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCC < SRR4302542.4092917/94‑1 (MQ=60)
CCACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCC > SRR4302542.4059201/1‑94 (MQ=60)
CACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCCG > SRR4302542.2231574/1‑94 (MQ=60)
CACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCCG < SRR4302542.543964/94‑1 (MQ=60)
CACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCCG > SRR4302542.5596072/1‑94 (MQ=60)
CACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCCG < SRR4302542.6503643/94‑1 (MQ=60)
CACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCCG < SRR4302542.6409750/94‑1 (MQ=60)
CACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCCG > SRR4302542.6305549/1‑94 (MQ=60)
CACGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCCG < SRR4302542.922813/94‑1 (MQ=60)
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ACCATCAGCGAAGGATGCAGCTGCAACACGGAAGCTGGAACATCTTCGGTAACCGGACCTTGCAGAACATTTTTCAGTGCCTGCGCTTTACCCGCGCCGCTGACAATTATCAGCAAGTTTTTCGCCGCCATGATGCTTTTCGGCCCCATCGTCACGTAGCTGTCAGGCACTAACGAAAAGTCGCCG > NC_000913/3896342‑3896527
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
