Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 1061 294.1 15065038 98.6% 14854127 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,911,336 T→C intergenic (‑40/+122) glmS ← / ← glmU L‑glutamine:D‑fructose‑6‑phosphate aminotransferase/N‑acetyl glucosamine‑1‑phosphate uridyltransferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,911,3360TC83.9% 694.3 / 130.8 316intergenic (‑40/+122)glmS/glmUL‑glutamine:D‑fructose‑6‑phosphate aminotransferase/N‑acetyl glucosamine‑1‑phosphate uridyltransferase
Reads supporting (aligned to +/- strand):  ref base T (26/25);  new base C (129/136);  total (155/161)
Fisher's exact test for biased strand distribution p-value = 8.79e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.99e-01

Only 100 of 316 total aligned reads displayed.

GAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTC  >  NC_000913/3911245‑3911427
                                                                                           |                                                                                           
gaagGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTa                                                                                            >  1:381971/1‑93 (MQ=255)
 aagGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCAt                                                                                           >  1:5688650/1‑93 (MQ=255)
 aagGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCAt                                                                                           <  2:2506861/93‑1 (MQ=255)
 aagGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCAt                                                                                           >  1:2112870/1‑93 (MQ=255)
    gATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGcc                                                                                        <  1:18833/93‑1 (MQ=255)
        tCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGtt                                                                                    <  1:4896384/93‑1 (MQ=255)
        tCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGtt                                                                                    >  2:847374/1‑93 (MQ=255)
         cTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGttt                                                                                   >  1:3428538/1‑93 (MQ=255)
         cTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGttt                                                                                   >  1:2743701/1‑93 (MQ=255)
           gCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGttttt                                                                                 >  1:5826168/1‑93 (MQ=255)
             tACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATGTCGTTGTCGGTCAACCTGTATGCCCGTTTTTTc                                                                               <  2:322806/93‑1 (MQ=255)
             tACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTc                                                                               >  1:5290898/1‑93 (MQ=255)
                 tCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGgc                                                                           <  1:2069141/93‑1 (MQ=255)
                 tCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGgc                                                                           <  2:2765434/93‑1 (MQ=255)
                   aCGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGgcgc                                                                         >  2:4714766/1‑93 (MQ=255)
                   aCGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGgcgc                                                                         >  2:3704461/1‑93 (MQ=255)
                    cGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGcc                                                                        <  2:3250308/93‑1 (MQ=255)
                     gTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGccc                                                                       <  2:1779708/93‑1 (MQ=255)
                      ttGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGcccc                                                                      <  1:6953021/93‑1 (MQ=255)
                      ttGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGcccc                                                                      >  2:3091541/1‑93 (MQ=255)
                        gcgcGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGa                                                                    <  1:5011608/93‑1 (MQ=255)
                           cgATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGcc                                                                 <  2:4926675/93‑1 (MQ=255)
                           cgATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGcc                                                                 <  2:2349149/93‑1 (MQ=255)
                            gATCGCGCCAACAATTCCACACATCGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCt                                                                <  2:4789852/93‑1 (MQ=255)
                             aTCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCtt                                                               >  2:6979723/1‑93 (MQ=255)
                             aTCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCtt                                                               <  1:2807066/93‑1 (MQ=255)
                             aTCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCtt                                                               <  1:254042/93‑1 (MQ=255)
                                gcgcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTa                                                            >  1:3063440/1‑93 (MQ=255)
                                gcgcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTa                                                            <  2:5252804/93‑1 (MQ=255)
                                gcgcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTa                                                            <  1:832331/93‑1 (MQ=255)
                                 cgcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTag                                                           <  2:1194878/93‑1 (MQ=255)
                                  gcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTaga                                                          <  1:5957120/93‑1 (MQ=255)
                                  gcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTaga                                                          >  2:6009330/1‑93 (MQ=255)
                                  gcCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTaga                                                          <  1:448148/93‑1 (MQ=255)
                                   ccAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagag                                                         <  2:6406083/93‑1 (MQ=255)
                                   ccAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagag                                                         >  1:1154936/1‑93 (MQ=255)
                                   ccAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagag                                                         >  2:4433923/1‑93 (MQ=255)
                                    caacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagaga                                                        >  2:2055339/1‑93 (MQ=255)
                                    caacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagaga                                                        >  2:6677246/1‑93 (MQ=255)
                                    caacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagaga                                                        <  1:1849850/93‑1 (MQ=255)
                                     aacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagagag                                                       >  1:1997756/1‑93 (MQ=255)
                                     aacaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTagagag                                                       >  1:4682328/1‑93 (MQ=255)
                                      acaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGt                                                      >  2:646317/1‑93 (MQ=255)
                                      acaaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGt                                                      <  1:1950515/93‑1 (MQ=255)
                                        aaTTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTgg                                                    <  1:2437438/93‑1 (MQ=255)
                                          ttCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTgggg                                                  >  1:6387539/1‑93 (MQ=255)
                                              acacaTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAt                                              >  2:5090084/1‑93 (MQ=255)
                                              acacaTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAt                                              >  2:1908990/1‑93 (MQ=255)
                                                acaTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAttt                                            >  2:4252028/1‑93 (MQ=255)
                                                acaTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAttt                                            >  1:2685084/1‑93 (MQ=255)
                                                 caTAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAttnn                                           >  2:1477385/1‑91 (MQ=255)
                                                 caTAGTTTTTGATTCCGATTTACATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGATAtttt                                           >  2:5902834/1‑93 (MQ=255)
                                                   tAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTta                                         <  2:7022376/93‑1 (MQ=255)
                                                   tAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTta                                         >  2:3843719/1‑93 (MQ=255)
                                                   tAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTta                                         >  2:1965263/1‑93 (MQ=255)
                                                   tAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTta                                         <  2:101490/93‑1 (MQ=255)
                                                     gTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTtata                                       <  1:3653389/93‑1 (MQ=255)
                                                      tttttGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAg                                      <  2:2001906/93‑1 (MQ=255)
                                                      tttttGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAg                                      <  2:4822882/93‑1 (MQ=255)
                                                      tttttGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAg                                      >  2:1640367/1‑93 (MQ=255)
                                                       ttttGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGt                                     <  1:3292720/93‑1 (MQ=255)
                                                          tGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTAc                                  >  1:922169/1‑93 (MQ=255)
                                                           gATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACt                                 <  2:5420061/93‑1 (MQ=255)
                                                           gATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACt                                 >  1:1741217/1‑93 (MQ=255)
                                                            aTTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCTCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTg                                >  2:5631107/1‑93 (MQ=255)
                                                            aTTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTg                                >  1:1579353/1‑93 (MQ=255)
                                                             ttCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGc                               <  1:1062100/93‑1 (MQ=255)
                                                             ttCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGc                               >  2:4642542/1‑93 (MQ=255)
                                                              tCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCt                              <  2:824625/93‑1 (MQ=255)
                                                              tCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCt                              <  2:6083122/93‑1 (MQ=255)
                                                                 gATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTtgt                           >  2:5835645/1‑93 (MQ=255)
                                                                 gATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTtgt                           <  1:1416695/93‑1 (MQ=255)
                                                                  aTTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTtgtg                          <  1:406947/93‑1 (MQ=255)
                                                                  aTTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTtgtg                          >  1:3950033/1‑93 (MQ=255)
                                                                   tttATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgg                         <  2:6800043/93‑1 (MQ=255)
                                                                     tataTCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTggga                       >  2:4019786/1‑93 (MQ=255)
                                                                      atatCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggag                      <  1:1723608/93‑1 (MQ=255)
                                                                       tatCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggagg                     >  2:7376024/1‑93 (MQ=255)
                                                                       tatCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggagg                     >  1:2847781/1‑93 (MQ=255)
                                                                        atCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggg                    >  2:2422961/1‑93 (MQ=255)
                                                                        atCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggg                    >  1:6827042/1‑93 (MQ=255)
                                                                        atCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggg                    >  1:6551017/1‑93 (MQ=255)
                                                                        atCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggg                    >  1:6641589/1‑93 (MQ=255)
                                                                         tCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTgggaggga                   <  1:752688/93‑1 (MQ=255)
                                                                         tCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGGGGGGTTATTTTTATAGTTACTGCTTGTgggaggga                   >  1:7063877/1‑93 (MQ=255)
                                                                           gTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGgaga                 <  2:3053030/93‑1 (MQ=255)
                                                                            ttGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGAt                >  1:2343560/1‑93 (MQ=255)
                                                                            ttGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGAt                <  2:4553059/93‑1 (MQ=255)
                                                                             tGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGAtt               >  1:6085091/1‑93 (MQ=255)
                                                                              gTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTa              >  2:3612373/1‑93 (MQ=255)
                                                                                 ggTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGt           >  1:5642173/1‑93 (MQ=255)
                                                                                  gTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGtt          <  1:354394/93‑1 (MQ=255)
                                                                                   tCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTa         >  2:6538442/1‑93 (MQ=255)
                                                                                   tCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTa         >  2:4389434/1‑93 (MQ=255)
                                                                                    cAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTAt        <  2:337008/93‑1 (MQ=255)
                                                                                    cAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTAt        >  2:7179845/1‑93 (MQ=255)
                                                                                     aaCCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTAtc       <  2:1812570/93‑1 (MQ=255)
                                                                                      aCCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTAtct      >  1:3173406/1‑93 (MQ=255)
                                                                                        cTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATctcc    <  2:5503395/93‑1 (MQ=255)
                                                                                        cTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATctcc    <  2:4168809/93‑1 (MQ=255)
                                                                                           |                                                                                           
GAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTC  >  NC_000913/3911245‑3911427

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTCAT  >  NC_000913/3911244‑3911429
                                                                                            |                                                                                             
AGAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTA                                                                                              >  SRR4302542.385295/1‑94 (MQ=60)
 GAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCAT                                                                                             >  SRR4302542.2131108/1‑94 (MQ=60)
 GAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCAT                                                                                             >  SRR4302542.5743895/1‑94 (MQ=60)
 GAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCAT                                                                                             <  SRR4302542.3681022/94‑1 (MQ=60)
 GAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTGGATTCCGATTTATATCGTTGTCGGTCAACCTGTAT                                                                                             <  SRR4302542.6083750/94‑1 (MQ=60)
    GGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCC                                                                                          <  SRR4302542.1784655/94‑1 (MQ=60)
    GGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCC                                                                                          >  SRR4302542.6326100/1‑94 (MQ=60)
     GATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCC                                                                                         <  SRR4302542.18997/94‑1 (MQ=60)
      ATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCG                                                                                        <  SRR4302542.2210787/94‑1 (MQ=60)
        TTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTT                                                                                      <  SRR4302542.3604626/94‑1 (MQ=60)
        TTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTT                                                                                      <  SRR4302542.7064063/94‑1 (MQ=60)
         TCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTT                                                                                     <  SRR4302542.4943980/94‑1 (MQ=60)
         TCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTT                                                                                     >  SRR4302542.2770152/1‑94 (MQ=60)
         TCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTT                                                                                     >  SRR4302542.3460648/1‑94 (MQ=60)
         TCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTT                                                                                     >  SRR4302542.6409858/1‑94 (MQ=60)
         TCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTT                                                                                     <  SRR4302542.1115259/94‑1 (MQ=60)
          CTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTT                                                                                    <  SRR4302542.772984/94‑1 (MQ=60)
           TGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTT                                                                                   >  SRR4302542.5882725/1‑94 (MQ=60)
           TGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTT                                                                                   <  SRR4302542.144662/94‑1 (MQ=60)
             CTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTC                                                                                 >  SRR4302542.5342321/1‑94 (MQ=60)
               ACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGG                                                                               >  SRR4302542.1873821/1‑94 (MQ=60)
               ACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGG                                                                               <  SRR4302542.386532/94‑1 (MQ=60)
                 ATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGC                                                                             >  SRR4302542.4552186/1‑94 (MQ=60)
                 ATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGC                                                                             <  SRR4302542.867514/94‑1 (MQ=60)
                  TCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCG                                                                            <  SRR4302542.2087027/94‑1 (MQ=60)
                  TCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCG                                                                            <  SRR4302542.4339473/94‑1 (MQ=60)
                   CACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGC                                                                           >  SRR4302542.2123944/1‑94 (MQ=60)
                   CACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGC                                                                           >  SRR4302542.5723929/1‑94 (MQ=60)
                      GTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCC                                                                        >  SRR4302542.402745/1‑94 (MQ=60)
                       TTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCG                                                                       <  SRR4302542.7021340/94‑1 (MQ=60)
                       TTGCGCGATCGCGCCAACAATTCCACACATAGTTGTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCG                                                                       <  SRR4302542.4569828/94‑1 (MQ=60)
                         GCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAG                                                                     <  SRR4302542.5224975/94‑1 (MQ=60)
                         GCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAG                                                                     <  SRR4302542.5060285/94‑1 (MQ=60)
                          CGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGC                                                                    <  SRR4302542.2935262/94‑1 (MQ=60)
                           GCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCC                                                                   <  SRR4302542.2712836/94‑1 (MQ=60)
                            CGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCT                                                                  >  SRR4302542.1738810/1‑94 (MQ=60)
                            CGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCT                                                                  <  SRR4302542.3469031/94‑1 (MQ=60)
                            CGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCT                                                                  <  SRR4302542.188533/94‑1 (MQ=60)
                             GATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTT                                                                 <  SRR4302542.3096712/94‑1 (MQ=60)
                              ATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTG                                                                <  SRR4302542.2834091/94‑1 (MQ=60)
                              ATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTG                                                                <  SRR4302542.1956148/94‑1 (MQ=60)
                              ATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTG                                                                <  SRR4302542.256205/94‑1 (MQ=60)
                                CGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTA                                                              >  SRR4302542.3092658/1‑94 (MQ=60)
                                 GCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAG                                                             <  SRR4302542.4950207/94‑1 (MQ=60)
                                 GCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAG                                                             <  SRR4302542.1667564/94‑1 (MQ=60)
                                 GCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAG                                                             <  SRR4302542.839522/94‑1 (MQ=60)
                                 GCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAG                                                             <  SRR4302542.2851616/94‑1 (MQ=60)
                                  CGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGA                                                            >  SRR4302542.3774012/1‑94 (MQ=60)
                                   GCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAG                                                           <  SRR4302542.6014804/94‑1 (MQ=60)
                                   GCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAG                                                           >  SRR4302542.1164834/1‑94 (MQ=60)
                                   GCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAG                                                           <  SRR4302542.452024/94‑1 (MQ=60)
                                    cccaacATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGA                                                          <  SRR4302542.2019089/88‑1 (MQ=60)
                                    CCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGA                                                          >  SRR4302542.3086263/1‑94 (MQ=60)
                                     CAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAG                                                         >  SRR4302542.4728080/1‑94 (MQ=60)
                                     CAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAG                                                         <  SRR4302542.1865854/94‑1 (MQ=60)
                                     CAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAG                                                         >  SRR4302542.2014991/1‑94 (MQ=60)
                                     CAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAG                                                         >  SRR4302542.1950437/1‑94 (MQ=60)
                                     CAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAG                                                         >  SRR4302542.3768494/1‑94 (MQ=60)
                                     CAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAG                                                         <  SRR4302542.2706518/94‑1 (MQ=60)
                                     CAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAG                                                         >  SRR4302542.2621734/1‑94 (MQ=60)
                                      AACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGT                                                        <  SRR4302542.317119/94‑1 (MQ=60)
                                      AACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGT                                                        <  SRR4302542.2500753/94‑1 (MQ=60)
                                       ACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTG                                                       <  SRR4302542.1967385/94‑1 (MQ=60)
                                        CAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGG                                                      >  SRR4302542.1874553/1‑94 (MQ=60)
                                         AATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGG                                                     <  SRR4302542.2461151/94‑1 (MQ=60)
                                          ATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGG                                                    >  SRR4302542.1200702/1‑94 (MQ=60)
                                          ATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGG                                                    <  SRR4302542.6341203/94‑1 (MQ=60)
                                          ATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGG                                                    >  SRR4302542.6450466/1‑94 (MQ=60)
                                            TCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTT                                                  <  SRR4302542.4771980/94‑1 (MQ=60)
                                             CCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTA                                                 >  SRR4302542.1340017/1‑94 (MQ=60)
                                              CACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAT                                                >  SRR4302542.59847/1‑94 (MQ=60)
                                              CACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTAT                                                <  SRR4302542.2019739/94‑1 (MQ=60)
                                               ACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATT                                               >  SRR4302542.1698741/1‑94 (MQ=60)
                                                CACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTT                                              >  SRR4302542.2710976/1‑94 (MQ=60)
                                                CACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTT                                              <  SRR4302542.6515422/94‑1 (MQ=60)
                                                 ACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTT                                             >  SRR4302542.4241748/1‑94 (MQ=60)
                                                  CATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTT                                            >  SRR4302542.834228/1‑94 (MQ=60)
                                                  CATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTT                                            <  SRR4302542.7221378/94‑1 (MQ=60)
                                                   ATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTA                                           >  SRR4302542.3383953/1‑94 (MQ=60)
                                                   ATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTA                                           >  SRR4302542.2003509/1‑94 (MQ=60)
                                                   ATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTA                                           >  SRR4302542.5212243/1‑94 (MQ=60)
                                                   ATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTA                                           >  SRR4302542.2011446/1‑94 (MQ=60)
                                                    TAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTAT                                          <  SRR4302542.7241102/94‑1 (MQ=60)
                                                    TAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTAT                                          >  SRR4302542.2555613/1‑94 (MQ=60)
                                                     AGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATA                                         >  SRR4302542.5233618/1‑94 (MQ=60)
                                                     AGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATA                                         <  SRR4302542.6773139/94‑1 (MQ=60)
                                                      GTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAG                                        <  SRR4302542.3687565/94‑1 (MQ=60)
                                                      GTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAG                                        >  SRR4302542.7085319/1‑94 (MQ=60)
                                                       TTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGT                                       <  SRR4302542.6977521/94‑1 (MQ=60)
                                                        TTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTT                                      <  SRR4302542.3323796/94‑1 (MQ=60)
                                                        TTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTT                                      <  SRR4302542.2439296/94‑1 (MQ=60)
                                                        TTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTT                                      <  SRR4302542.3323794/94‑1 (MQ=60)
                                                         TTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTA                                     <  SRR4302542.2102258/94‑1 (MQ=60)
                                                         TTTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTA                                     <  SRR4302542.889572/94‑1 (MQ=60)
                                                          TTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTAC                                    >  SRR4302542.930109/1‑94 (MQ=60)
                                                          TTGATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTAC                                    >  SRR4302542.6127633/1‑94 (MQ=60)
                                                           TGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACT                                   >  SRR4302542.1756324/1‑94 (MQ=60)
                                                            GATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTG                                  >  SRR4302542.1592993/1‑94 (MQ=60)
                                                             ATTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGC                                 >  SRR4302542.3576601/1‑94 (MQ=60)
                                                              TTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCT                                <  SRR4302542.1071230/94‑1 (MQ=60)
                                                              TTCCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCT                                <  SRR4302542.3921498/94‑1 (MQ=60)
                                                               TCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTT                               >  SRR4302542.3037595/1‑94 (MQ=60)
                                                                CCGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTG                              <  SRR4302542.6871196/94‑1 (MQ=60)
                                                                 CGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGT                             <  SRR4302542.6624438/94‑1 (MQ=60)
                                                                 CGATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGT                             >  SRR4302542.4962192/1‑94 (MQ=60)
                                                                  GATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTG                            >  SRR4302542.1449184/1‑94 (MQ=60)
                                                                  GATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTG                            <  SRR4302542.1428962/94‑1 (MQ=60)
                                                                  GATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTG                            <  SRR4302542.1145596/94‑1 (MQ=60)
                                                                  GATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTG                            <  SRR4302542.6681765/94‑1 (MQ=60)
                                                                  GATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTG                            >  SRR4302542.3989035/1‑94 (MQ=60)
                                                                   ATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGG                           <  SRR4302542.1749783/94‑1 (MQ=60)
                                                                   ATTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGG                           <  SRR4302542.410463/94‑1 (MQ=60)
                                                                    TTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGG                          >  SRR4302542.2838063/1‑94 (MQ=60)
                                                                    TTTATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGG                          >  SRR4302542.2301216/1‑94 (MQ=60)
                                                                      TATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAG                        <  SRR4302542.5570287/94‑1 (MQ=60)
                                                                       ATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGG                       <  SRR4302542.6583939/94‑1 (MQ=60)
                                                                       ATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGG                       >  SRR4302542.2875157/1‑94 (MQ=60)
                                                                       ATATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGG                       <  SRR4302542.1738569/94‑1 (MQ=60)
                                                                        TATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGG                      >  SRR4302542.6894143/1‑94 (MQ=60)
                                                                        TATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGG                      >  SRR4302542.2402775/1‑94 (MQ=60)
                                                                        TATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGG                      >  SRR4302542.6707056/1‑94 (MQ=60)
                                                                        TATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGG                      >  SRR4302542.6615604/1‑94 (MQ=60)
                                                                         ATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGA                     >  SRR4302542.5853931/1‑94 (MQ=60)
                                                                         ATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGA                     >  SRR4302542.5670168/1‑94 (MQ=60)
                                                                         ATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGA                     <  SRR4302542.2787296/94‑1 (MQ=60)
                                                                         ATCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGGGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGA                     >  SRR4302542.7133206/1‑94 (MQ=60)
                                                                          TCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAG                    <  SRR4302542.759201/94‑1 (MQ=60)
                                                                          TCGTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAG                    <  SRR4302542.4784095/94‑1 (MQ=60)
                                                                           CGCTGTCGGGCCACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGCGGGGGTATCTTTCTCGTTACTCCTTTTGCGAGGGAGA                   >  SRR4302542.5863517/1‑94 (MQ=42)
                                                                            GTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGGGAT                  >  SRR4302542.2788457/1‑94 (MQ=60)
                                                                            GTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGAT                  >  SRR4302542.3661431/1‑94 (MQ=60)
                                                                            GTTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGAT                  >  SRR4302542.2363632/1‑94 (MQ=60)
                                                                             TTGTCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATT                 >  SRR4302542.6144008/1‑94 (MQ=60)
                                                                                TCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATG              <  SRR4302542.2769417/94‑1 (MQ=60)
                                                                                TCGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATG              >  SRR4302542.6005499/1‑94 (MQ=60)
                                                                                 CGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGT             >  SRR4302542.4041101/1‑94 (MQ=60)
                                                                                 CGGTCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGT             >  SRR4302542.5696960/1‑94 (MQ=60)
                                                                                   GTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTA           <  SRR4302542.357486/94‑1 (MQ=60)
                                                                                    TCAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTAT          <  SRR4302542.1004250/94‑1 (MQ=60)
                                                                                     CAACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATC         >  SRR4302542.1844658/1‑94 (MQ=60)
                                                                                      AACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCT        >  SRR4302542.5699612/1‑94 (MQ=60)
                                                                                      AACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCT        >  SRR4302542.7333783/1‑94 (MQ=60)
                                                                                      AACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCT        >  SRR4302542.3203497/1‑94 (MQ=60)
                                                                                      AACCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCT        <  SRR4302542.242761/94‑1 (MQ=60)
                                                                                        CCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCC      >  SRR4302542.3341378/1‑94 (MQ=60)
                                                                                        CCTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCC      >  SRR4302542.3843613/1‑94 (MQ=60)
                                                                                         CTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCT     >  SRR4302542.6951688/1‑94 (MQ=60)
                                                                                         CTGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCT     >  SRR4302542.5666320/1‑94 (MQ=60)
                                                                                          TGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTC    >  SRR4302542.6930998/1‑94 (MQ=60)
                                                                                          TGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTC    <  SRR4302542.3270422/94‑1 (MQ=60)
                                                                                          TGCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTC    >  SRR4302542.3617211/1‑94 (MQ=60)
                                                                                           GCATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTCA   >  SRR4302542.7433487/1‑94 (MQ=60)
                                                                                            CATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTCAT  >  SRR4302542.2745725/1‑94 (MQ=60)
                                                                                            CATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTCAT  <  SRR4302542.5290023/94‑1 (MQ=60)
                                                                                            CATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTCAT  <  SRR4302542.5158054/94‑1 (MQ=60)
                                                                                            CATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTCAT  <  SRR4302542.6301613/94‑1 (MQ=60)
                                                                                            |                                                                                             
AGAAGGATTTCTGCTACATCACGTTGCGCGATCGCGCCAACAATTCCACACATAGTTTTTGATTCCGATTTATATCGTTGTCGGTCAACCTGTATGCCCGTTTTTTCGGGCGCCCCGAGCCTTGTAGAGAGTGGGGTTATTTTTATAGTTACTGCTTGTGGGAGGGAGATTATGTTATCTCCTCAT  >  NC_000913/3911244‑3911429

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑