Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
899,581 |
A→T |
I73N (ATC→AAC) |
artJ ← |
arginine 3rd transport system periplasmic binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 899,581 | 0 | A | T | 99.2%
| 858.5
/ NA
| 252 | I73N (ATC→AAC) | artJ | arginine 3rd transport system periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base A (1/1); major base T (102/146); minor base G (2/0); total (105/147) |
| Fisher's exact test for biased strand distribution p-value = 1.72e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 256 total aligned reads displayed.
GGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGAC > NC_000913/899491‑899669
|
cGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAg > 1:8061099/1‑93 (MQ=255)
cGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAg > 2:8684632/1‑93 (MQ=255)
tGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGc < 2:6854547/93‑1 (MQ=255)
tGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGc > 2:650871/1‑93 (MQ=255)
ggTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCt > 1:8421593/1‑93 (MQ=255)
ggTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCt < 2:4129090/93‑1 (MQ=255)
gTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTg < 2:3218398/93‑1 (MQ=255)
gTAAACGATACCTGTTTGCTACGCTCCGGGGGGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCGGGCTg > 1:6623512/1‑93 (MQ=255)
tAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGt < 2:7742682/93‑1 (MQ=255)
aaaCGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTc > 1:6351196/1‑93 (MQ=255)
aaCGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCg > 1:3722497/1‑93 (MQ=255)
aaCGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCg < 1:76148/93‑1 (MQ=255)
ccTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGt < 1:4775587/93‑1 (MQ=255)
ccTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGt > 2:5798749/1‑93 (MQ=255)
cTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTg > 2:4580081/1‑93 (MQ=255)
cTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTg > 1:1487683/1‑93 (MQ=255)
tGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGa < 1:436884/93‑1 (MQ=255)
tGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGa > 1:6097481/1‑93 (MQ=255)
gTTTGCTCCGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGAt < 2:4275152/93‑1 (MQ=255)
gTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGAt < 1:1954200/93‑1 (MQ=255)
tttGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGAtt < 1:1009792/93‑1 (MQ=255)
ttGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTa < 2:2539120/93‑1 (MQ=255)
ttGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTa < 2:5468043/93‑1 (MQ=255)
tGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAg < 1:1151283/93‑1 (MQ=255)
tGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAg > 2:4419600/1‑93 (MQ=255)
tGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAg > 1:2598267/1‑93 (MQ=255)
gCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGt > 1:517732/1‑93 (MQ=255)
cTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTa > 1:5975916/1‑93 (MQ=255)
aCGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTaaa > 2:3914885/1‑93 (MQ=255)
aCGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTaaa < 2:8463508/93‑1 (MQ=255)
cGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTaaaa > 2:3132460/1‑93 (MQ=255)
cGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTaaaa < 1:7112454/93‑1 (MQ=255)
gCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAg < 2:1781210/93‑1 (MQ=255)
cTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAga > 2:3492156/1‑92 (MQ=255)
cTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGt < 2:6636237/93‑1 (MQ=255)
tCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTa < 1:7449535/93‑1 (MQ=255)
tCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTa > 2:2107993/1‑93 (MQ=255)
ccGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTaa > 1:6873665/1‑92 (MQ=255)
ccGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGGTCAGGCTGTCGAACGCGTGATTAGTAAAAGTAc > 2:3076703/1‑93 (MQ=255)
ggggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACAt < 1:8800364/93‑1 (MQ=255)
ggggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACAt > 1:132414/1‑93 (MQ=255)
gggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACAtt > 2:5420924/1‑93 (MQ=255)
gggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACAtt < 1:5739930/93‑1 (MQ=255)
gggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACAtt > 2:5213903/1‑93 (MQ=255)
tGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctg > 2:7099384/1‑93 (MQ=255)
tGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctg > 2:1217702/1‑93 (MQ=255)
gATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgc > 2:7039477/1‑93 (MQ=255)
tatCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcct < 1:7903298/93‑1 (MQ=255)
tatCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcct < 1:1540565/93‑1 (MQ=255)
atCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcctg < 2:3641591/93‑1 (MQ=255)
atCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcctg < 1:2492781/93‑1 (MQ=255)
atCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcctg < 2:2234333/93‑1 (MQ=255)
atCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcctg > 2:6444793/1‑93 (MQ=255)
atCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcctg < 1:8678263/93‑1 (MQ=255)
cATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAt > 1:2399936/1‑93 (MQ=255)
aTACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtt < 1:4959633/93‑1 (MQ=255)
aTACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtt < 1:639346/93‑1 (MQ=255)
aTACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtt < 2:423225/93‑1 (MQ=255)
tACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAttt > 1:4641006/1‑93 (MQ=255)
aCCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtttt > 1:4554950/1‑92 (MQ=255)
ccGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtttgt < 1:1789529/93‑1 (MQ=255)
ccGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtttgt > 1:3476626/1‑93 (MQ=255)
cGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtttgtt > 2:2665476/1‑93 (MQ=255)
agaTTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGc < 2:4736769/93‑1 (MQ=255)
aTTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGcac < 2:8509847/93‑1 (MQ=255)
tACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACaa < 2:6824975/93‑1 (MQ=255)
ggCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGc < 1:8717841/93‑1 (MQ=255)
gCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCt < 2:7409586/93‑1 (MQ=255)
gCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCt > 2:2766321/1‑93 (MQ=255)
cGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCtt < 1:3191977/93‑1 (MQ=255)
gTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCttt < 1:5317743/93‑1 (MQ=255)
tCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCtttt > 1:7074153/1‑93 (MQ=255)
atatTTTCTGAATTTCAGGTACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGc < 2:5123613/93‑1 (MQ=255)
atatTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGc < 1:3552076/93‑1 (MQ=255)
atatTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGc > 2:4692885/1‑93 (MQ=255)
atTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCa > 1:3965337/1‑93 (MQ=255)
ttttCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAg > 1:5506395/1‑93 (MQ=255)
ttttCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAAGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAg > 1:8190894/1‑93 (MQ=255)
ttCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGAt < 2:1082803/93‑1 (MQ=255)
tCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATc < 2:7076376/93‑1 (MQ=255)
cTGAATTTCAGGGGCGGGTTCAGGCTGTCAAACGCGTGATTGGTAAAAGAACATTCTGCCTTCATTTGTTTGCACAAGGTTTTTGTCGGATCg > 2:5867222/1‑93 (MQ=255)
aaTTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGata < 2:7582417/93‑1 (MQ=255)
aaTTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGata > 1:6493960/1‑93 (MQ=255)
aaTTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGata < 2:6299640/93‑1 (MQ=255)
aaTGTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGata < 2:3267/93‑1 (MQ=255)
aTTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGatat < 2:4858713/93‑1 (MQ=255)
aTTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGatat < 1:2860023/93‑1 (MQ=255)
aTTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGatat < 2:7924626/93‑1 (MQ=255)
tCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCaa > 2:5695073/1‑93 (MQ=255)
tCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCaa > 2:1912693/1‑93 (MQ=255)
cAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCaaa > 1:7749972/1‑93 (MQ=255)
cAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCaaa < 1:5781217/93‑1 (MQ=255)
gggACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGc < 2:6052672/93‑1 (MQ=255)
gggACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGc < 1:2769124/93‑1 (MQ=255)
gggACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGc > 1:2973812/1‑93 (MQ=255)
gACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCg > 2:3540912/1‑93 (MQ=255)
aCGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGa < 2:1383957/93‑1 (MQ=255)
cGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGAc < 2:561331/93‑1 (MQ=255)
cGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGAc < 1:8818072/93‑1 (MQ=255)
cGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGAc < 1:1288969/93‑1 (MQ=255)
|
GGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGAC > NC_000913/899491‑899669
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCT > NC_000913/899488‑899674
|
TAGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGT < SRR4302541.5658/94‑1 (MQ=60)
TAGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGT > SRR4302541.918323/1‑94 (MQ=60)
AGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTT < SRR4302541.1922615/94‑1 (MQ=60)
GGGCGTGGTACACGATACCTGTTTGCTGCGCTCCGGGGTGATATCCATACCGGAGATTGCGGCGTCATATTTTCTGAATTTCAGGGACGGGTTC < SRR4302541.5718178/94‑1 (MQ=60)
GCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAG < SRR4302541.5614426/94‑1 (MQ=60)
GCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAG < SRR4302541.8795701/94‑1 (MQ=60)
GCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAG < SRR4302541.8159364/94‑1 (MQ=60)
GCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAG > SRR4302541.8149663/1‑94 (MQ=60)
TGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCT > SRR4302541.8512629/1‑94 (MQ=60)
GGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCT < SRR4302541.2124684/94‑1 (MQ=60)
GGTAAACGATACCTGTTTGCTACGCTCCGGGGGGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCGGGCTG > SRR4302541.6691397/1‑94 (MQ=60)
TAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTC < SRR4302541.3458466/94‑1 (MQ=60)
TAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTC > SRR4302541.6416116/1‑94 (MQ=60)
TAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTC > SRR4302541.6643947/1‑94 (MQ=60)
AAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCG > SRR4302541.3760012/1‑94 (MQ=60)
AAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCG < SRR4302541.8211312/94‑1 (MQ=60)
AACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGA < SRR4302541.76799/94‑1 (MQ=60)
ACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAA < SRR4302541.171243/94‑1 (MQ=60)
CGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGCAC > SRR4302541.1246801/1‑94 (MQ=60)
CGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAC < SRR4302541.3118558/94‑1 (MQ=60)
TACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCG > SRR4302541.3566775/1‑94 (MQ=60)
CCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTG > SRR4302541.1502334/1‑94 (MQ=60)
CCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTG < SRR4302541.4824342/94‑1 (MQ=60)
CTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGT > SRR4302541.6159735/1‑94 (MQ=60)
CTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGA > SRR4302541.6917746/1‑94 (MQ=60)
CTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGA > SRR4302541.6159734/1‑94 (MQ=60)
CTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGA > SRR4302541.2776939/1‑94 (MQ=60)
TGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGAT < SRR4302541.441001/94‑1 (MQ=60)
TGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGAT > SRR4302541.4593335/1‑94 (MQ=60)
GTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATT < SRR4302541.1973032/94‑1 (MQ=60)
GTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATT < SRR4302541.2335412/94‑1 (MQ=60)
TTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTA < SRR4302541.1019141/94‑1 (MQ=60)
TTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAG > SRR4302541.2624290/1‑94 (MQ=60)
TTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAG < SRR4302541.6620927/94‑1 (MQ=60)
TTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAG < SRR4302541.7852945/94‑1 (MQ=60)
TGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGT > SRR4302541.522569/1‑94 (MQ=60)
TGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGT < SRR4302541.1162277/94‑1 (MQ=60)
GCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTA > SRR4302541.6036957/1‑94 (MQ=60)
CGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAG < SRR4302541.1041521/94‑1 (MQ=60)
CGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAG < SRR4302541.7188208/94‑1 (MQ=60)
CGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAG > SRR4302541.1554992/1‑94 (MQ=60)
CGCTACGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAG > SRR4302541.6445648/1‑94 (MQ=60)
CTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGGTTAGTAAAAGTA > SRR4302541.2528578/1‑94 (MQ=60)
TCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTAC < SRR4302541.7529111/94‑1 (MQ=60)
TCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTAA > SRR4302541.6947072/1‑94 (MQ=60)
cggggttatattcaatccggaagaTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACAT < SRR4302541.4961894/70‑1 (MQ=60)
CGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACAT > SRR4302541.133452/1‑94 (MQ=60)
CGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACAT > SRR4302541.8121164/1‑94 (MQ=60)
GGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAACGTACATT > SRR4302541.3470953/1‑94 (MQ=60)
GGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATT < SRR4302541.5698954/94‑1 (MQ=60)
GGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATT < SRR4302541.8894343/94‑1 (MQ=60)
CGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATT < SRR4302541.8894344/94‑1 (MQ=60)
GGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTC < SRR4302541.5324973/94‑1 (MQ=60)
GGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTC < SRR4302541.5234473/94‑1 (MQ=60)
GGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTC < SRR4302541.5798417/94‑1 (MQ=60)
GGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTC < SRR4302541.1724992/94‑1 (MQ=60)
GTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTG < SRR4302541.7806988/94‑1 (MQ=60)
GTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTG < SRR4302541.4653336/94‑1 (MQ=60)
ATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCT < SRR4302541.1966556/94‑1 (MQ=60)
TATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTG < SRR4302541.7990227/94‑1 (MQ=60)
TATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTG < SRR4302541.1556040/94‑1 (MQ=60)
TATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTG > SRR4302541.4804756/1‑94 (MQ=60)
ATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGC < SRR4302541.2517908/94‑1 (MQ=60)
ATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGC < SRR4302541.8771119/94‑1 (MQ=60)
ATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGCGATTAGTAAAAGTACACTCTGCCTGC > SRR4302541.7184548/1‑94 (MQ=60)
CCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAT > SRR4302541.2423462/1‑94 (MQ=60)
CATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATT < SRR4302541.7029239/94‑1 (MQ=60)
ATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTT < SRR4302541.5010390/94‑1 (MQ=60)
ATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTT < SRR4302541.5854459/94‑1 (MQ=60)
ATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTT < SRR4302541.645380/94‑1 (MQ=60)
ATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTT < SRR4302541.8085953/94‑1 (MQ=60)
ATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTT > SRR4302541.4688249/1‑94 (MQ=60)
TACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTT > SRR4302541.4601035/1‑94 (MQ=60)
ACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGT > SRR4302541.3511397/1‑94 (MQ=60)
ACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGT > SRR4302541.8467065/1‑94 (MQ=60)
CCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTT < SRR4302541.1806915/94‑1 (MQ=60)
CGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTT < SRR4302541.5837274/94‑1 (MQ=60)
GGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTG > SRR4302541.2982562/1‑94 (MQ=60)
GAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGC < SRR4302541.3688880/94‑1 (MQ=60)
GAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGC < SRR4302541.3688879/94‑1 (MQ=60)
TACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAG > SRR4302541.7050393/1‑94 (MQ=60)
TACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAG > SRR4302541.6116821/1‑94 (MQ=60)
TACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAG > SRR4302541.1341208/1‑94 (MQ=60)
TACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAG < SRR4302541.6511058/94‑1 (MQ=60)
tcgggGTCATATTTTCTGAATTTTAGGGACGGGGTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGG < SRR4302541.5037424/89‑1 (MQ=60)
TCGGCCTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGG < SRR4302541.4728731/94‑1 (MQ=60)
ACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGG < SRR4302541.7734398/94‑1 (MQ=60)
GGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCT < SRR4302541.8811080/94‑1 (MQ=60)
CGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTT < SRR4302541.4577540/94‑1 (MQ=60)
CGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTT < SRR4302541.8515440/94‑1 (MQ=60)
CGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTT < SRR4302541.3224221/94‑1 (MQ=60)
GTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTT < SRR4302541.5372476/94‑1 (MQ=60)
GTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTT > SRR4302541.7149393/1‑94 (MQ=60)
GTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTT > SRR4302541.2727930/1‑94 (MQ=60)
CATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGC < SRR4302541.1416399/94‑1 (MQ=60)
ATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCC < SRR4302541.3587997/94‑1 (MQ=60)
ATATTTTCTGAATTTCAGGGACGGGGTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCC > SRR4302541.2943223/1‑94 (MQ=60)
TATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCA < SRR4302541.7244797/94‑1 (MQ=60)
TATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCA > SRR4302541.4004708/1‑94 (MQ=60)
ATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAG > SRR4302541.5562789/1‑94 (MQ=60)
ATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAG < SRR4302541.283226/94‑1 (MQ=60)
ATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAAGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAG > SRR4302541.8280298/1‑94 (MQ=60)
TTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTTTTTGCACAAGGTTTTTGCCAGT > SRR4302541.2447064/1‑94 (MQ=60)
TTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGA > SRR4302541.2447063/1‑94 (MQ=60)
TTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGAT < SRR4302541.5983908/94‑1 (MQ=60)
TTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATC > SRR4302541.5127876/1‑94 (MQ=60)
TCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCG < SRR4302541.1306842/94‑1 (MQ=60)
CTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGA > SRR4302541.8413578/1‑94 (MQ=60)
GAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATA > SRR4302541.6560159/1‑94 (MQ=60)
AATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATAT > SRR4302541.3971341/1‑94 (MQ=60)
AATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATAT < SRR4302541.4044956/94‑1 (MQ=60)
ATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATC < SRR4302541.2888772/94‑1 (MQ=60)
TTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAatgtcaagatcggaagagcggt > SRR4302541.6487167/1‑72 (MQ=60)
TTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCA < SRR4302541.8593086/94‑1 (MQ=60)
TTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCA < SRR4302541.8854730/94‑1 (MQ=60)
TTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAA > SRR4302541.5518389/1‑94 (MQ=60)
TCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAA > SRR4302541.7832430/1‑94 (MQ=60)
CAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAG < SRR4302541.5839992/94‑1 (MQ=60)
AGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGC > SRR4302541.386634/1‑94 (MQ=60)
AGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGC > SRR4302541.3003783/1‑94 (MQ=60)
AGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGC > SRR4302541.8843972/1‑94 (MQ=60)
GGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCC < SRR4302541.1291864/94‑1 (MQ=60)
GGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCC < SRR4302541.2797008/94‑1 (MQ=60)
GGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCC < SRR4302541.7522521/94‑1 (MQ=60)
ACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGAC > SRR4302541.7678064/1‑94 (MQ=60)
CGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACA < SRR4302541.8912201/94‑1 (MQ=60)
CGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACA < SRR4302541.8912202/94‑1 (MQ=60)
CGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACA < SRR4302541.1301717/94‑1 (MQ=60)
GGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAA > SRR4302541.1064906/1‑94 (MQ=60)
GGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAA > SRR4302541.7071277/1‑94 (MQ=60)
GGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAA > SRR4302541.3594945/1‑94 (MQ=60)
GGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAAT > SRR4302541.1963024/1‑94 (MQ=60)
GGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAAT > SRR4302541.6400973/1‑94 (MQ=60)
GGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAAT > SRR4302541.6400972/1‑94 (MQ=60)
GGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAAT < SRR4302541.6123145/94‑1 (MQ=60)
GGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAAT < SRR4302541.2827003/94‑1 (MQ=60)
GGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAAT < SRR4302541.4498755/94‑1 (MQ=60)
GTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATC < SRR4302541.5083852/94‑1 (MQ=60)
TTCAGGCTGTCGAACGCGTGATTAGTAAAAATACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCT < SRR4302541.78226/94‑1 (MQ=60)
|
TAGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCT > NC_000913/899488‑899674
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
