Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
899,581 |
A→T |
I73N (ATC→AAC) |
artJ ← |
arginine 3rd transport system periplasmic binding protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 899,581 | 0 | A | T | 99.1%
| 796.1
/ ‑3.8
| 215 | I73N (ATC→AAC) | artJ | arginine 3rd transport system periplasmic binding protein |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base T (83/129); total (85/130) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.65e-01 |
Only 100 of 216 total aligned reads displayed.
GCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACA > NC_000913/899492‑899670
|
cGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAg < 1:378266/93‑1 (MQ=255)
cGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAg < 2:2311384/93‑1 (MQ=255)
gTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAgg < 1:812505/93‑1 (MQ=255)
gTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCAAACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAgg > 1:5659844/1‑93 (MQ=255)
tGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGc < 2:686844/93‑1 (MQ=255)
tGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGc > 1:6321841/1‑93 (MQ=255)
tGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGc < 1:2887774/93‑1 (MQ=255)
ggTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCt > 2:5679380/1‑93 (MQ=255)
ggTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGGTCAGGCt > 1:4694253/1‑93 (MQ=255)
gTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTg < 2:659170/93‑1 (MQ=255)
gTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTg > 2:3848642/1‑93 (MQ=255)
tAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGt < 1:4328610/93‑1 (MQ=255)
aaaCGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTc < 1:4025068/93‑1 (MQ=255)
aaaCGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTc < 2:4355182/93‑1 (MQ=255)
aaaCGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTc < 2:2508834/93‑1 (MQ=255)
cGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGaa < 1:1120422/93‑1 (MQ=255)
gATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAc > 2:1834339/1‑93 (MQ=255)
gATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAc < 1:3659214/93‑1 (MQ=255)
aTACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAcg < 1:2451395/93‑1 (MQ=255)
aTACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAcg > 2:4544730/1‑93 (MQ=255)
tACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAcgc > 2:4261008/1‑93 (MQ=255)
tccTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAcgcg < 2:4306813/92‑1 (MQ=255)
aCCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAcgcg > 2:2893489/1‑93 (MQ=255)
aCCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAcgcg < 1:4627011/93‑1 (MQ=255)
aCCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTGCAGGGACGGGTTCAGGCTGTCGAAcgcg < 1:719927/93‑1 (MQ=255)
ccTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGt < 1:1383619/93‑1 (MQ=255)
ccTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGt < 2:1359209/93‑1 (MQ=255)
cTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTg > 1:4231327/1‑93 (MQ=255)
cTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTg < 1:3438678/93‑1 (MQ=255)
cTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTg > 2:5964305/1‑93 (MQ=255)
cTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTg < 1:5538239/93‑1 (MQ=255)
gTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGAt > 2:1381305/1‑93 (MQ=255)
gTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGAt < 1:987852/93‑1 (MQ=255)
ttGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTa < 2:2083081/93‑1 (MQ=255)
tGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAg < 1:1441165/93‑1 (MQ=255)
tGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAg > 1:6093565/1‑93 (MQ=255)
tGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAg < 1:5375846/93‑1 (MQ=255)
gCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGt > 2:3285093/1‑93 (MQ=255)
cTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTa < 1:5104199/93‑1 (MQ=255)
tACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTaa < 1:3950879/93‑1 (MQ=255)
aCGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTaaa < 2:4204974/93‑1 (MQ=255)
cGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTaaaa > 1:4382991/1‑93 (MQ=255)
cGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTaaaa < 1:3568097/93‑1 (MQ=255)
cGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTaaaa < 1:3252050/93‑1 (MQ=255)
tCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTa < 2:1502015/93‑1 (MQ=255)
tCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTa < 2:5732943/93‑1 (MQ=255)
ccGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTAc < 1:6070847/93‑1 (MQ=255)
ccGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTAc > 2:4692455/1‑93 (MQ=255)
gggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACAtt > 2:2343538/1‑93 (MQ=255)
ggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTc < 1:5645983/93‑1 (MQ=255)
ggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTc < 2:5590134/93‑1 (MQ=255)
ggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTc < 2:2810266/93‑1 (MQ=255)
ggTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTc < 1:2243399/93‑1 (MQ=255)
tGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctg < 1:2144866/93‑1 (MQ=255)
gATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgc > 2:100210/1‑93 (MQ=255)
atatCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcc < 1:1548249/93‑1 (MQ=255)
tatCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcct < 2:5928170/93‑1 (MQ=255)
tatCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTctgcct > 2:2702828/1‑93 (MQ=255)
ccATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCa < 1:5824358/93‑1 (MQ=255)
cATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAt > 1:1636199/1‑93 (MQ=255)
aTACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtt < 1:6427017/93‑1 (MQ=255)
aTACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtt < 1:5069593/93‑1 (MQ=255)
aTACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtt > 2:2231157/1‑93 (MQ=255)
tACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAttt > 2:6062188/1‑93 (MQ=255)
ccGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtttgt > 2:1257454/1‑93 (MQ=255)
cGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtttgtt < 1:4855540/93‑1 (MQ=255)
cGGAGAGTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtttgtt < 2:6358106/93‑1 (MQ=255)
ggAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtttgttt < 1:3164927/93‑1 (MQ=255)
gagaTTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAtttgtttg > 1:543749/1‑93 (MQ=255)
agaTTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGc > 2:6412873/1‑93 (MQ=255)
gaTTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGca > 2:1925789/1‑93 (MQ=255)
gaTTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGca > 2:2761362/1‑93 (MQ=255)
aTTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGcac < 2:4702728/93‑1 (MQ=255)
aTTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGcac < 1:4612339/93‑1 (MQ=255)
tACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACaa > 2:2174760/1‑93 (MQ=255)
tACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACaa < 2:3110806/93‑1 (MQ=255)
tACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACaa > 2:3786370/1‑93 (MQ=255)
aCGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAg < 1:2761658/93‑1 (MQ=255)
ggCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAATGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGc < 2:263894/93‑1 (MQ=255)
gCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCt < 2:771577/93‑1 (MQ=255)
cGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCtt < 1:2419391/93‑1 (MQ=255)
tCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCtttt < 1:2521561/93‑1 (MQ=255)
tCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCtttt > 2:5235238/1‑93 (MQ=255)
atatTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGc < 1:3589206/93‑1 (MQ=255)
atatTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGc < 1:124380/93‑1 (MQ=255)
atatTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGc < 2:3534111/93‑1 (MQ=255)
atTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCa < 2:4410713/93‑1 (MQ=255)
ttttCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAg < 1:1709620/93‑1 (MQ=255)
ttCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGAt < 1:5977659/93‑1 (MQ=255)
ttCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGAt > 2:3871845/1‑93 (MQ=255)
cTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCg < 2:2333179/93‑1 (MQ=255)
aTTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGatat > 1:1034350/1‑93 (MQ=255)
ttCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCa > 1:2085674/1‑93 (MQ=255)
cAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCaaa > 1:5596517/1‑93 (MQ=255)
aGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAg > 2:3370525/1‑93 (MQ=255)
aGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAg > 2:6327432/1‑93 (MQ=255)
gggACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGc < 1:4399228/93‑1 (MQ=255)
ggACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGcc > 1:5211687/1‑93 (MQ=255)
cGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGAc < 1:3535388/93‑1 (MQ=255)
gggTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACa > 1:3101798/1‑93 (MQ=255)
|
GCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACA > NC_000913/899492‑899670
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TAGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCT > NC_000913/899488‑899674
|
TAGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGT < SRR4302534.4072364/94‑1 (MQ=60)
AGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTT > SRR4302534.873923/1‑94 (MQ=60)
AGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTT > SRR4302534.1571833/1‑94 (MQ=60)
GGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTC < SRR4302534.3286882/94‑1 (MQ=60)
GGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTC < SRR4302534.2039559/94‑1 (MQ=60)
GCGCGTGCTAAACGATCCCTGTTTGCGTCGCTCCGGGGGTATATCCATCCCTGAGATTCCGGCGTCATATTTTCTGAATTTCAGGGACGGGTTC < SRR4302534.1179296/94‑1 (MQ=42)
GGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCA > SRR4302534.1487198/1‑94 (MQ=60)
CGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGG < SRR4302534.387936/94‑1 (MQ=60)
CGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCAAACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGG > SRR4302534.5813069/1‑94 (MQ=60)
GTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGC < SRR4302534.832919/94‑1 (MQ=60)
GTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGC > SRR4302534.6492678/1‑94 (MQ=60)
TGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCT < SRR4302534.2963546/94‑1 (MQ=60)
TGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGGTCAGGCT > SRR4302534.4821660/1‑94 (MQ=60)
TGTAAACAATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGACGTATTTTCTGAATTTCAGGGACGGGTTCAGGCTG < SRR4302534.5772229/94‑1 (MQ=60)
TAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTC < SRR4302534.2782206/94‑1 (MQ=60)
TAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTC < SRR4302534.3431346/94‑1 (MQ=60)
TAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTC < SRR4302534.4445688/94‑1 (MQ=60)
TAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTC < SRR4302534.2157967/94‑1 (MQ=60)
AAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCG > SRR4302534.5845226/1‑94 (MQ=60)
AAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCG < SRR4302534.2365267/94‑1 (MQ=60)
AAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCG < SRR4302534.4132999/94‑1 (MQ=60)
AACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGA > SRR4302534.335878/1‑94 (MQ=60)
AACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGA > SRR4302534.699300/1‑94 (MQ=60)
CGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAAC < SRR4302534.1149695/94‑1 (MQ=60)
GATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACG < SRR4302534.3757553/94‑1 (MQ=60)
ATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGC < SRR4302534.2516529/94‑1 (MQ=60)
ATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGC < SRR4302534.406731/94‑1 (MQ=60)
TACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCG < SRR4302534.2040857/94‑1 (MQ=60)
ACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGT < SRR4302534.4752556/94‑1 (MQ=60)
ACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTGCAGGGACGGGTTCAGGCTGTCGAACGCGT < SRR4302534.737689/94‑1 (MQ=60)
CCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTG < SRR4302534.1420044/94‑1 (MQ=60)
CCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTG > SRR4302534.4345376/1‑94 (MQ=60)
CCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTG < SRR4302534.4510082/94‑1 (MQ=60)
CTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGA < SRR4302534.3531101/94‑1 (MQ=60)
CTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGA < SRR4302534.5687734/94‑1 (MQ=60)
CTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGA < SRR4302534.1017040/94‑1 (MQ=60)
TGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGAT > SRR4302534.790783/1‑94 (MQ=60)
GTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATT < SRR4302534.1013109/94‑1 (MQ=60)
GTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATT < SRR4302534.6305958/94‑1 (MQ=60)
TTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAG > SRR4302534.6259269/1‑94 (MQ=60)
TTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAG < SRR4302534.4049189/94‑1 (MQ=60)
TTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGCAAGGGTTCAGGCTGTCGAACGGGTGATTAT > SRR4302534.6149990/1‑94 (MQ=60)
TGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGT < SRR4302534.5520697/94‑1 (MQ=60)
TGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGT < SRR4302534.3288469/94‑1 (MQ=60)
TGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGT > SRR4302534.5888389/1‑94 (MQ=60)
TGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGT < SRR4302534.1479094/94‑1 (MQ=60)
GCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTA < SRR4302534.2291824/94‑1 (MQ=60)
CTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAA < SRR4302534.114720/94‑1 (MQ=60)
CTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAA < SRR4302534.5241957/94‑1 (MQ=60)
TACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAA < SRR4302534.4056648/94‑1 (MQ=60)
ACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAA > SRR4302534.4501148/1‑94 (MQ=60)
CGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAG < SRR4302534.3664073/94‑1 (MQ=60)
CGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAG < SRR4302534.3338666/94‑1 (MQ=60)
GCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGT < SRR4302534.3722631/94‑1 (MQ=60)
CTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTA < SRR4302534.3662577/94‑1 (MQ=60)
TCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTAC < SRR4302534.1750948/94‑1 (MQ=60)
TCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTAC > SRR4302534.1151765/1‑94 (MQ=60)
CCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACA < SRR4302534.6235902/94‑1 (MQ=60)
GGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATT < SRR4302534.54160/94‑1 (MQ=60)
GGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTC < SRR4302534.4026890/94‑1 (MQ=60)
GGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCT < SRR4302534.2302854/94‑1 (MQ=60)
GGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCT < SRR4302534.5798808/94‑1 (MQ=60)
GGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCT < SRR4302534.4738421/94‑1 (MQ=60)
GGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCT < SRR4302534.971280/94‑1 (MQ=60)
TGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGC < SRR4302534.2201456/94‑1 (MQ=60)
ATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCT < SRR4302534.1588824/94‑1 (MQ=60)
ATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCT > SRR4302534.1681450/1‑94 (MQ=60)
ATATCCATACCGGAGATTACGGCGGCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCT > SRR4302534.4785187/1‑94 (MQ=60)
TCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCA < SRR4302534.253448/94‑1 (MQ=60)
CCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAT < SRR4302534.5982448/94‑1 (MQ=60)
CCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCAT > SRR4302534.1678851/1‑94 (MQ=60)
CATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATT < SRR4302534.726492/94‑1 (MQ=60)
CATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATT < SRR4302534.6025282/94‑1 (MQ=60)
ATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTT < SRR4302534.6600334/94‑1 (MQ=60)
ATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTT < SRR4302534.5206456/94‑1 (MQ=60)
TACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTG > SRR4302534.3219719/1‑94 (MQ=60)
ACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGT > SRR4302534.2836602/1‑94 (MQ=60)
CGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTT < SRR4302534.4987271/94‑1 (MQ=60)
CGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTT < SRR4302534.5427244/94‑1 (MQ=60)
CGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGACTGCATTTGTTT > SRR4302534.62385/1‑94 (MQ=60)
GGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTG > SRR4302534.5226976/1‑94 (MQ=60)
GGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTG > SRR4302534.557179/1‑94 (MQ=60)
GGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTG < SRR4302534.3248369/94‑1 (MQ=60)
GGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTG > SRR4302534.1657459/1‑94 (MQ=60)
GATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCAC < SRR4302534.474356/94‑1 (MQ=60)
ATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACA < SRR4302534.4737515/94‑1 (MQ=60)
ATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACA < SRR4302534.358751/94‑1 (MQ=60)
ACGGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGG < SRR4302534.2834389/94‑1 (MQ=60)
GGCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCT > SRR4302534.6156278/1‑94 (MQ=60)
GCGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTT < SRR4302534.1417676/94‑1 (MQ=60)
CGTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTT < SRR4302534.2483727/94‑1 (MQ=60)
GTCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTT > SRR4302534.5697572/1‑94 (MQ=60)
TCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTG > SRR4302534.2544604/1‑94 (MQ=60)
TCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTG < SRR4302534.2588496/94‑1 (MQ=60)
TCATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTG > SRR4302534.5553840/1‑94 (MQ=60)
ATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCC < SRR4302534.3685735/94‑1 (MQ=60)
ATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCC > SRR4302534.5629081/1‑94 (MQ=60)
ATATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCC < SRR4302534.127666/94‑1 (MQ=60)
TATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCA > SRR4302534.5812841/1‑94 (MQ=60)
ATTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAG < SRR4302534.4782001/94‑1 (MQ=60)
TTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGA < SRR4302534.4354943/94‑1 (MQ=60)
TTTTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGA < SRR4302534.1754044/94‑1 (MQ=60)
TTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATC < SRR4302534.2981850/94‑1 (MQ=60)
TTCTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATC < SRR4302534.6140012/94‑1 (MQ=60)
CTGAATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGA > SRR4302534.3685451/1‑94 (MQ=60)
AATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATAT > SRR4302534.1061043/1‑94 (MQ=60)
ATTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATC < SRR4302534.3845472/94‑1 (MQ=60)
TTTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCA > SRR4302534.2140328/1‑94 (MQ=60)
TTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAA < SRR4302534.2485113/94‑1 (MQ=60)
TTCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAA > SRR4302534.5194285/1‑94 (MQ=60)
TCAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAA > SRR4302534.5747855/1‑94 (MQ=60)
CAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAG > SRR4302534.424410/1‑94 (MQ=60)
CAGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAG > SRR4302534.4699694/1‑94 (MQ=60)
AGGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGC < SRR4302534.4847625/94‑1 (MQ=60)
GGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCC < SRR4302534.4517928/94‑1 (MQ=60)
GGGACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCC < SRR4302534.6580666/94‑1 (MQ=60)
GGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCC > SRR4302534.5352339/1‑94 (MQ=60)
GGACGGGTTCAGGCTGTCGAACGCTTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCG > SRR4302534.5336318/1‑94 (MQ=60)
ACGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGAC > SRR4302534.1451967/1‑94 (MQ=60)
CGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACA < SRR4302534.4460395/94‑1 (MQ=60)
CGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACA > SRR4302534.3183384/1‑94 (MQ=60)
CGGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACA < SRR4302534.3630481/94‑1 (MQ=60)
GGGTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAA > SRR4302534.4546318/1‑94 (MQ=60)
GTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATC > SRR4302534.4347094/1‑94 (MQ=60)
GTTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATC > SRR4302534.37162/1‑94 (MQ=60)
TTCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCT < SRR4302534.5644001/94‑1 (MQ=60)
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TAGGGCGTGGTAAACGATACCTGTTTGCTACGCTCCGGGGTGATATCCATACCGGAGATTACGGCGTCATATTTTCTGAATTTCAGGGACGGGATCAGGCTGTCGAACGCGTGATTAGTAAAAGTACATTCTGCCTGCATTTGTTTGCACAAGGCTTTTGCCAGATCGATATCAAAGCCGACAATCT > NC_000913/899488‑899674
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
