Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,074,187 |
T→C |
T1307A (ACC→GCC) |
putA ← |
proline dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,074,187 | 0 | T | C | 100.0%
| 914.4
/ NA
| 265 | T1307A (ACC→GCC) | putA | proline dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (136/129); total (136/129) |
Only 100 of 276 total aligned reads displayed.
ACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGC > NC_000913/1074097‑1074276
|
aCGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCAt < 2:2263680/93‑1 (MQ=255)
aCGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCAt < 2:6729614/93‑1 (MQ=255)
aCGTTAAAGATGCCGGAGGAGGTTGGAACATCCTCCGGCTACCTGGTTAACCTATAGTCATTAAGCTTGCGTTACCGCCAGCGGCAGCGGCAt > 1:231975/1‑93 (MQ=255)
cGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCAtt > 2:100873/1‑93 (MQ=255)
ttAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTca > 2:607394/1‑93 (MQ=255)
ttAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTca > 1:5001468/1‑93 (MQ=255)
tAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTcac > 2:884801/1‑93 (MQ=255)
aaGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCacac > 2:5011854/1‑93 (MQ=255)
aGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACt < 1:2264627/93‑1 (MQ=255)
aGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACt > 2:7385458/1‑93 (MQ=255)
aGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACt < 2:8476200/93‑1 (MQ=255)
gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCCCACTc > 1:5823494/1‑93 (MQ=255)
gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTc > 1:875744/1‑93 (MQ=255)
gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTc > 1:8283569/1‑93 (MQ=255)
aTGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCa < 2:7945152/93‑1 (MQ=255)
tGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAg < 2:7863324/93‑1 (MQ=255)
tGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAg < 1:6389018/93‑1 (MQ=255)
tGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAg > 1:4589782/1‑93 (MQ=255)
tGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAg < 2:1437826/93‑1 (MQ=255)
gCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGc < 1:6279997/93‑1 (MQ=255)
cGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTGAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGa < 2:6469470/93‑1 (MQ=255)
ggaggaGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGaa > 2:6202546/1‑93 (MQ=255)
aggaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACg < 2:4498701/93‑1 (MQ=255)
aggaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACg < 2:3567824/93‑1 (MQ=255)
ggaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGc > 1:7347654/1‑93 (MQ=255)
gaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCt > 2:4170909/1‑93 (MQ=255)
gaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCt < 1:1024573/93‑1 (MQ=255)
gaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCt < 1:3481633/93‑1 (MQ=255)
gaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCt < 1:3642635/93‑1 (MQ=255)
aggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTc > 1:2539338/1‑93 (MQ=255)
aggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTc > 2:7219024/1‑93 (MQ=255)
tAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGAtata < 2:5319551/93‑1 (MQ=255)
tAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGAtata < 1:478569/93‑1 (MQ=255)
tAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGAtata < 1:5425271/93‑1 (MQ=255)
aaCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATAc > 1:7047733/1‑93 (MQ=255)
aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGGATTCACACTCAGCGAACGCTCGATATACa > 1:7199224/1‑93 (MQ=255)
aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACa > 2:7559265/1‑93 (MQ=255)
aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACa < 1:4876856/93‑1 (MQ=255)
aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACa < 2:7282541/93‑1 (MQ=255)
aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACa < 1:7882442/93‑1 (MQ=255)
aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACa < 2:1793969/93‑1 (MQ=255)
aTCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGc < 2:1296284/93‑1 (MQ=255)
tcctccGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGcc < 1:4018834/93‑1 (MQ=255)
tcctccGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGcc < 2:8452577/93‑1 (MQ=255)
cctccGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCg < 2:8302189/93‑1 (MQ=255)
ctccGGCTACCTGTTTAAACTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGt > 2:1101596/1‑93 (MQ=255)
ccGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTc > 2:1659936/1‑93 (MQ=255)
cGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTcc < 1:6615772/93‑1 (MQ=255)
cGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTcc < 2:543992/93‑1 (MQ=255)
ggCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCa > 2:96950/1‑93 (MQ=255)
ggCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCa > 1:5664972/1‑93 (MQ=255)
gCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAg < 2:6347333/93‑1 (MQ=255)
gCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAg > 2:5741896/1‑93 (MQ=255)
cttccTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGa < 1:7515925/90‑1 (MQ=255)
cTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGa > 2:3301426/1‑93 (MQ=255)
cTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGa < 1:7453422/93‑1 (MQ=255)
tACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGaa > 1:1819136/1‑93 (MQ=255)
tACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGaa > 1:2069321/1‑93 (MQ=255)
tACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGaa < 2:2789024/93‑1 (MQ=255)
tACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGaa < 2:4884020/93‑1 (MQ=255)
tACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGaa > 2:3695755/1‑93 (MQ=255)
aCCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAg > 2:7477117/1‑93 (MQ=255)
ccTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAgg > 1:8470027/1‑93 (MQ=255)
ccTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAgg > 1:5900578/1‑93 (MQ=255)
cTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGa > 2:5638659/1‑93 (MQ=255)
tGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGat > 1:8651569/1‑93 (MQ=255)
tGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGat > 1:960856/1‑93 (MQ=255)
ttAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATAtt < 1:7978551/93‑1 (MQ=255)
ttAACCTATAGTCATTAAGATGGCGTTACCGCCAGAGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATAtt > 1:8532823/1‑93 (MQ=255)
tAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTg < 2:216405/93‑1 (MQ=255)
aaCCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGc < 2:8598141/93‑1 (MQ=255)
ccTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCtt < 2:8397948/93‑1 (MQ=255)
tataGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTc < 2:2530016/93‑1 (MQ=255)
taGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGc > 1:1615027/1‑93 (MQ=255)
aTTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACgg > 2:4647797/1‑93 (MQ=255)
ttAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACggg < 1:1090227/93‑1 (MQ=255)
ttAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACggg > 1:5282466/1‑93 (MQ=255)
aaGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCa > 1:2169894/1‑93 (MQ=255)
cTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCaaaa > 1:6550083/1‑93 (MQ=255)
cTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCaaaa > 2:3613622/1‑93 (MQ=255)
cTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCaaaa < 2:6976540/93‑1 (MQ=255)
gCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAccc < 1:5605877/93‑1 (MQ=255)
gCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAccc < 2:3951859/93‑1 (MQ=255)
gCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAccc < 1:2589611/93‑1 (MQ=255)
gTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTg < 1:1375965/93‑1 (MQ=255)
aCCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCAc > 1:3355532/1‑93 (MQ=255)
ccGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCAcc < 1:3113538/93‑1 (MQ=255)
cGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCg < 1:286246/93‑1 (MQ=255)
cGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCg > 1:8051719/1‑93 (MQ=255)
ccAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGaa > 1:3978470/1‑93 (MQ=255)
cagcggcagcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGaaa > 2:4363816/1‑93 (MQ=255)
gcggcagcggcaTTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACa < 2:5879022/93‑1 (MQ=255)
ggcagcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAAt < 2:5944995/93‑1 (MQ=255)
ggcagcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAAt < 1:1928592/93‑1 (MQ=255)
gcagctgCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAACCTGCACCGAAACAAtt > 1:779166/1‑93 (MQ=255)
gcagcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCACCACGGGCAAAACCCTGCACCGAAACAAtt > 2:8044063/1‑93 (MQ=255)
agcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATtgt < 2:4333024/93‑1 (MQ=255)
agcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATtgt < 1:4500544/93‑1 (MQ=255)
gcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATtgtg > 2:3074751/1‑93 (MQ=255)
cggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGc < 1:380199/93‑1 (MQ=255)
|
ACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGC > NC_000913/1074097‑1074276
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCAT > NC_000913/1074095‑1074279
|
CCACGTTAATGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCA < SRR4302541.3475190/94‑1 (MQ=60)
CCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCA > SRR4302541.2512101/1‑94 (MQ=60)
CCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCA < SRR4302541.3744989/94‑1 (MQ=60)
CCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCA > SRR4302541.625697/1‑94 (MQ=60)
CCACGTTAAAGATGCCGGAGGAGGGTGTAACATCGTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCA > SRR4302541.2512102/1‑94 (MQ=60)
CCACGCTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCA > SRR4302541.1054813/1‑94 (MQ=60)
CACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCAT > SRR4302541.5740914/1‑94 (MQ=60)
CACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCAT > SRR4302541.6589766/1‑94 (MQ=60)
CACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCAT > SRR4302541.2574048/1‑94 (MQ=60)
CACGTTAAAGATGCCGGAGGAGGTTGGAACATCCTCCGGCTACCTGGTTAACCTATAGTCATTAAGCTTGCGTTACCGCCAGCGGCAGCGGCAT > SRR4302541.233785/1‑94 (MQ=60)
ACGTTAAAGATGCCGGAGTAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATT < SRR4302541.525255/94‑1 (MQ=60)
ACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATT > SRR4302541.7478590/1‑94 (MQ=60)
CGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTC < SRR4302541.3133518/94‑1 (MQ=60)
GTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCA > SRR4302541.2080783/1‑94 (MQ=60)
GTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCA > SRR4302541.8690387/1‑94 (MQ=60)
GTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCA > SRR4302541.5052853/1‑94 (MQ=60)
GTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCA > SRR4302541.1678961/1‑94 (MQ=60)
TAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACA > SRR4302541.2119506/1‑94 (MQ=60)
AAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACAC > SRR4302541.3900508/1‑94 (MQ=60)
AGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCCCACTC > SRR4302541.5882693/1‑94 (MQ=60)
AGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTC > SRR4302541.8373670/1‑94 (MQ=60)
AGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTC > SRR4302541.5882692/1‑94 (MQ=60)
AGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTC > SRR4302541.883468/1‑94 (MQ=60)
AGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTC > SRR4302541.883738/1‑94 (MQ=60)
AGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTC < SRR4302541.2286500/94‑1 (MQ=60)
ATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAG > SRR4302541.4636317/1‑94 (MQ=60)
ATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAG < SRR4302541.1096759/94‑1 (MQ=60)
TGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGC < SRR4302541.6454253/94‑1 (MQ=60)
GCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCG < SRR4302541.1848314/94‑1 (MQ=60)
GCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCG > SRR4302541.257677/1‑94 (MQ=60)
GCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCG < SRR4302541.6344136/94‑1 (MQ=60)
CCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGA > SRR4302541.5665734/1‑94 (MQ=60)
CGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAA > SRR4302541.1709342/1‑94 (MQ=60)
GGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAAC < SRR4302541.3444984/94‑1 (MQ=60)
AGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGC > SRR4302541.7426146/1‑94 (MQ=60)
GAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTC < SRR4302541.3516468/94‑1 (MQ=60)
GAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTC < SRR4302541.3679580/94‑1 (MQ=60)
GAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTC < SRR4302541.1034033/94‑1 (MQ=60)
GAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTC > SRR4302541.2564828/1‑94 (MQ=60)
GAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTC > SRR4302541.6759586/1‑94 (MQ=60)
AGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCG > SRR4302541.2752270/1‑94 (MQ=60)
AGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCG < SRR4302541.2220126/94‑1 (MQ=60)
AGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCG < SRR4302541.4588600/94‑1 (MQ=60)
AGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCG < SRR4302541.3864727/94‑1 (MQ=60)
GGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGA > SRR4302541.5897460/1‑94 (MQ=60)
GGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGA > SRR4302541.7559495/1‑94 (MQ=60)
GGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGA < SRR4302541.3679455/94‑1 (MQ=60)
GTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGAT > SRR4302541.2336908/1‑94 (MQ=60)
TTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATA < SRR4302541.7224001/94‑1 (MQ=60)
TTGTAACACCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATA < SRR4302541.6003399/94‑1 (MQ=60)
TGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATAT < SRR4302541.7573564/94‑1 (MQ=60)
GTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATA > SRR4302541.4052579/1‑94 (MQ=60)
TAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATAC < SRR4302541.5480937/94‑1 (MQ=60)
TAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATAC < SRR4302541.483109/94‑1 (MQ=60)
TAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATAC > SRR4302541.7122685/1‑94 (MQ=60)
AACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGGATTCACACTCAGCGAACGCTCGATATACA > SRR4302541.7276027/1‑94 (MQ=60)
AACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACA > SRR4302541.5615599/1‑94 (MQ=60)
AACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACA > SRR4302541.3487034/1‑94 (MQ=60)
AACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACA < SRR4302541.1442785/94‑1 (MQ=60)
ACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAG < SRR4302541.7969085/94‑1 (MQ=60)
ACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAG < SRR4302541.4926619/94‑1 (MQ=60)
CATCCTCCGGCTACCTTTTTAATCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACGCTCAGCGAACGCTCGATATACAGC < SRR4302541.5035968/94‑1 (MQ=60)
CATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGC < SRR4302541.243032/94‑1 (MQ=60)
TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCG < SRR4302541.4058561/94‑1 (MQ=60)
TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCG < SRR4302541.4058560/94‑1 (MQ=60)
TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCG < SRR4302541.602118/94‑1 (MQ=60)
CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCATCGAAGGCTCGATATACAGCCGT > SRR4302541.900391/1‑94 (MQ=60)
CCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGT > SRR4302541.6393229/1‑94 (MQ=60)
CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTT < SRR4302541.3646983/94‑1 (MQ=60)
CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTT < SRR4302541.4674143/94‑1 (MQ=60)
CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTT < SRR4302541.7841934/94‑1 (MQ=60)
CGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCA > SRR4302541.5722815/1‑94 (MQ=60)
CGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCA < SRR4302541.6683579/94‑1 (MQ=60)
GGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAG > SRR4302541.2244468/1‑94 (MQ=60)
CTTCCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAA < SRR4302541.7596244/94‑1 (MQ=60)
CTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAA > SRR4302541.2089319/1‑94 (MQ=60)
CTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAA < SRR4302541.7533025/94‑1 (MQ=60)
CTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAA > SRR4302541.674007/1‑94 (MQ=60)
CTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAA > SRR4302541.1836805/1‑94 (MQ=60)
TACCTGTTTACCCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAG < SRR4302541.6593259/94‑1 (MQ=60)
ACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGG > SRR4302541.5960627/1‑94 (MQ=60)
ACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGG > SRR4302541.8561374/1‑94 (MQ=60)
CCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCAATCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGA < SRR4302541.2745965/94‑1 (MQ=60)
CCTGTGTAAACTAGAGTCATTAAGCTGGCGTTCCCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGA < SRR4302541.7945985/94‑1 (MQ=60)
CTGTTTACCCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGAT < SRR4302541.637862/94‑1 (MQ=60)
CTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGAT > SRR4302541.8744210/1‑94 (MQ=60)
CTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGAT > SRR4302541.969915/1‑94 (MQ=60)
CTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGAT > SRR4302541.5382821/1‑94 (MQ=60)
CTGTTTAACCTATAGACATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGAT < SRR4302541.7906081/94‑1 (MQ=60)
TGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATA > SRR4302541.8274053/1‑94 (MQ=60)
GTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATAT < SRR4302541.5708359/94‑1 (MQ=60)
GTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATAT > SRR4302541.1358667/1‑94 (MQ=60)
TTTAACCTATAGTCATTAAGGTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATT > SRR4302541.8624592/1‑94 (MQ=60)
TTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATT > SRR4302541.4070699/1‑94 (MQ=60)
TTTAACCTATAGTCATTAAGATGGCGTTACCGCCAGAGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATT > SRR4302541.8624593/1‑94 (MQ=60)
TTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTG < SRR4302541.8066447/94‑1 (MQ=60)
TTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTG < SRR4302541.804736/94‑1 (MQ=60)
TTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTG < SRR4302541.7397546/94‑1 (MQ=60)
TAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGC > SRR4302541.512236/1‑94 (MQ=60)
TAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGC > SRR4302541.663217/1‑94 (MQ=60)
AACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCT > SRR4302541.1458268/1‑94 (MQ=60)
ACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTT > SRR4302541.2092708/1‑94 (MQ=60)
CCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTT < SRR4302541.1290888/94‑1 (MQ=60)
CTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTC > SRR4302541.2555036/1‑94 (MQ=60)
TATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCG > SRR4302541.3268862/1‑94 (MQ=60)
TATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCG < SRR4302541.8109529/94‑1 (MQ=60)
ATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGC > SRR4302541.1631063/1‑94 (MQ=60)
TCATTAAGCTGGCGTTGCCGCCCGCGGCAGCGGCATTCACACTCAGCGAACGCGCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACG < SRR4302541.6969142/94‑1 (MQ=60)
TCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACG < SRR4302541.4920470/94‑1 (MQ=60)
TCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACG < SRR4302541.4026719/94‑1 (MQ=60)
CATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGG > SRR4302541.7372279/1‑94 (MQ=60)
CATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGG > SRR4302541.2035671/1‑94 (MQ=60)
ATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGG > SRR4302541.5336853/1‑94 (MQ=60)
TTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGC < SRR4302541.8087805/94‑1 (MQ=60)
TTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGC < SRR4302541.1100421/94‑1 (MQ=60)
TAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCA > SRR4302541.2190874/1‑94 (MQ=60)
GCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAA > SRR4302541.6617009/1‑94 (MQ=60)
CTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAC < SRR4302541.8694348/94‑1 (MQ=60)
CTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAC > SRR4302541.8389183/1‑94 (MQ=60)
TGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACC > SRR4302541.8232880/1‑94 (MQ=60)
GGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCC > SRR4302541.8390271/1‑94 (MQ=60)
GGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCC > SRR4302541.5627472/1‑94 (MQ=60)
GCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCT < SRR4302541.2615556/94‑1 (MQ=60)
GCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCT < SRR4302541.5663254/94‑1 (MQ=60)
GCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCT < SRR4302541.2799145/94‑1 (MQ=60)
GTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGC < SRR4302541.1389496/94‑1 (MQ=60)
TTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCA > SRR4302541.4837360/1‑94 (MQ=60)
TACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCAC > SRR4302541.3837867/1‑94 (MQ=60)
TACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCAC > SRR4302541.3389031/1‑94 (MQ=60)
ACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACC > SRR4302541.899741/1‑94 (MQ=60)
CCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCG > SRR4302541.8140231/1‑94 (MQ=60)
CCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCG < SRR4302541.3145058/94‑1 (MQ=60)
CGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGA < SRR4302541.288697/94‑1 (MQ=60)
GCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAA > SRR4302541.4017926/1‑94 (MQ=60)
CCAGCGGCAGCGGCATTCACACGCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAA < SRR4302541.4947214/94‑1 (MQ=60)
CGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAAT > SRR4302541.1003581/1‑94 (MQ=60)
GGCAGCTGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAACCTGCACCGAAACAATT > SRR4302541.786421/1‑94 (MQ=60)
GGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATT > SRR4302541.986326/1‑94 (MQ=60)
GGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATT < SRR4302541.1947165/94‑1 (MQ=60)
AGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTG < SRR4302541.7267969/94‑1 (MQ=60)
AGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTG > SRR4302541.8793029/1‑94 (MQ=60)
AGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTG > SRR4302541.3203294/1‑94 (MQ=60)
AGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTG < SRR4302541.4545942/94‑1 (MQ=60)
GCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGC < SRR4302541.7697131/94‑1 (MQ=60)
CGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCC > SRR4302541.7078517/1‑94 (MQ=60)
CGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCC < SRR4302541.383704/94‑1 (MQ=60)
CGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCC < SRR4302541.4713819/94‑1 (MQ=60)
GCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCAT < SRR4302541.4901260/94‑1 (MQ=60)
GCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCAT < SRR4302541.413018/94‑1 (MQ=60)
|
CCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCAT > NC_000913/1074095‑1074279
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
