Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,074,187 |
T→C |
T1307A (ACC→GCC) |
putA ← |
proline dehydrogenase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,074,187 | 0 | T | C | 100.0%
| 730.3
/ NA
| 209 | T1307A (ACC→GCC) | putA | proline dehydrogenase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (119/90); total (119/90) |
Only 100 of 221 total aligned reads displayed.
ACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGC > NC_000913/1074097‑1074276
|
cGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTAGCGCCAGCGGAAGCGGCAtt > 1:3586073/1‑93 (MQ=255)
cGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCAtt > 2:1512829/1‑93 (MQ=255)
ttAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTca < 2:3541973/93‑1 (MQ=255)
tAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTcac > 2:2879143/1‑93 (MQ=255)
aaaGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGGTACCGCCAGCGGCAGCGGCATTcaca > 2:231078/1‑93 (MQ=255)
aaaGATGCCGGAGGAGGTTGTAACATCCTCCGACTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTcaca > 2:2606428/1‑93 (MQ=255)
aaaGATGCCGGAGGAGGTTGTAACACCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTcaca < 1:2270153/93‑1 (MQ=255)
aaGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCacac > 2:157355/1‑93 (MQ=255)
aaGATGCCGGAGGAGGCTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCacac > 1:1004419/1‑93 (MQ=255)
aGATGCTTGAGTAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTCGCGTTACCGCCAGCGGCAGCGGCATTCACACt > 1:4643005/1‑93 (MQ=255)
gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTc < 2:3837852/93‑1 (MQ=255)
gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTc > 1:4122228/1‑93 (MQ=255)
gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTc < 2:2159571/93‑1 (MQ=255)
gATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTc > 2:6463322/1‑93 (MQ=255)
aTGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCa < 1:3884484/93‑1 (MQ=255)
gCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGc > 1:6336315/1‑93 (MQ=255)
gCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGc < 1:3632036/93‑1 (MQ=255)
ccGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCAGCATTCACACTCAGCg > 2:246392/1‑93 (MQ=255)
cGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGa > 1:2115768/1‑93 (MQ=255)
ggaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGGATTCACACTCAGCGAACGc > 1:5023981/1‑93 (MQ=255)
ggaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGc < 2:2565459/93‑1 (MQ=255)
ggaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGc > 1:3110961/1‑93 (MQ=255)
gaggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGcc > 2:666065/1‑92 (MQ=255)
gggTTGTAACATCCTCCGGCTACCTGTTTAACTTATAGTCATTAAGCTGGCGTGCCCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTc < 2:3335589/92‑1 (MQ=255)
aggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTc < 1:5385064/93‑1 (MQ=255)
ggTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCg > 2:6299599/1‑93 (MQ=255)
gTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGa > 2:5414446/1‑93 (MQ=255)
tGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGata < 2:6006392/93‑1 (MQ=255)
tAACATCCTCCGCCTACCTGTTTACCCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGAtata < 1:3657070/93‑1 (MQ=255)
aaCATCCTCCGTCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATAc < 2:2649560/93‑1 (MQ=255)
aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACa < 2:5088263/93‑1 (MQ=255)
aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACa > 1:2510589/1‑93 (MQ=255)
aCATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACa > 1:3217669/1‑93 (MQ=255)
aTCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGc > 1:1138538/1‑93 (MQ=255)
aTCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGc < 1:930659/93‑1 (MQ=255)
tcctccGGCTACCTGTTTAGCCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGcc < 2:683935/93‑1 (MQ=255)
tcctccGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGcc < 1:4443398/93‑1 (MQ=255)
tccGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGtt > 1:5696397/1‑93 (MQ=255)
cgggCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTCCCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTc < 2:2355585/91‑1 (MQ=255)
ccGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTc < 1:2707382/93‑1 (MQ=255)
cGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTcc < 2:4690035/93‑1 (MQ=255)
ggCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCa > 2:5183969/1‑93 (MQ=255)
ggCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCa < 1:335341/93‑1 (MQ=255)
ggCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCa < 1:3159257/93‑1 (MQ=255)
gCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAg > 1:5119509/1‑93 (MQ=255)
gCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAg > 1:5896488/1‑93 (MQ=255)
aCCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAg > 1:1760639/1‑93 (MQ=255)
aCCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAg < 2:3747705/93‑1 (MQ=255)
aCCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAg > 2:4313744/1‑93 (MQ=255)
cTGTGTAACCTATAGTCATTAAGCTGGCGTTCCCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGa < 2:4509562/93‑1 (MQ=255)
tGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGat > 2:245932/1‑93 (MQ=255)
tttAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGatat > 1:4757208/1‑93 (MQ=255)
tttAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGatat > 1:942906/1‑93 (MQ=255)
tAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTg > 2:5927506/1‑93 (MQ=255)
aaCCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGc < 1:2411391/93‑1 (MQ=255)
aCCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTTCt > 2:1235958/1‑93 (MQ=255)
ccTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCtt > 1:1394050/1‑93 (MQ=255)
cTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCttt > 1:6003474/1‑93 (MQ=255)
tataGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTc < 1:5811602/93‑1 (MQ=255)
taGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGc < 1:1520442/93‑1 (MQ=255)
aGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGcc > 2:3461813/1‑93 (MQ=255)
gTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCa > 1:3920761/1‑93 (MQ=255)
tCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCAc < 2:1383786/93‑1 (MQ=255)
tCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCAc < 1:2835599/93‑1 (MQ=255)
cATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACg > 1:1577623/1‑93 (MQ=255)
cATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACg > 1:5480211/1‑93 (MQ=255)
aTTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACgg < 2:2729075/93‑1 (MQ=255)
aTTAAGCTGGCGTTACCGACAGCGGCAGCGGCATTCACACTCAGCGCACGCTCGATATAAAGCCGTTCCAGCAGGACATTCATATCGCCACgg > 1:4913021/1‑93 (MQ=255)
ttAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACggg > 1:2967651/1‑93 (MQ=255)
tAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCCATATACAGCCATTCCAGAAGGATATTGCTTTCGCCACGGGc > 1:4349309/1‑93 (MQ=255)
aaGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCa > 2:4194988/1‑93 (MQ=255)
aGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCaa > 1:5663099/1‑93 (MQ=255)
aGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCaa > 2:3003076/1‑93 (MQ=255)
aGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCaa > 2:1894131/1‑93 (MQ=255)
aGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCaa > 2:370636/1‑93 (MQ=255)
tGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAc > 2:4632088/1‑93 (MQ=255)
tGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAc < 2:5473800/93‑1 (MQ=255)
tGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAc > 2:6136421/1‑93 (MQ=255)
tGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAc < 1:816040/93‑1 (MQ=255)
ggCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAcc > 1:1042617/1‑93 (MQ=255)
ggCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAcc > 2:574597/1‑93 (MQ=255)
ggCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAcc > 1:1841193/1‑93 (MQ=255)
ggCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAcc < 1:2562493/93‑1 (MQ=255)
gCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATGCAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAccc < 1:3673598/93‑1 (MQ=255)
gCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAccc > 2:1490721/1‑93 (MQ=255)
gCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAccc < 2:5673857/93‑1 (MQ=255)
cGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCt < 2:75706/93‑1 (MQ=255)
cGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCt < 1:4005284/93‑1 (MQ=255)
ccGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCAcc > 2:3933895/1‑93 (MQ=255)
ccAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGaa > 1:5555384/1‑93 (MQ=255)
ccAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGaa > 1:2097656/1‑93 (MQ=255)
cagcggcagcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGaaa > 1:1437525/1‑93 (MQ=255)
agcggcagcggcATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAAc < 1:5754198/93‑1 (MQ=255)
cggcagcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACaa > 1:2243553/1‑93 (MQ=255)
ggcagcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAAt > 1:3556574/1‑93 (MQ=255)
ggcagcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAAt < 2:6058207/93‑1 (MQ=255)
gcagcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAAtt > 2:4988669/1‑93 (MQ=255)
gcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATtgtg > 2:5249743/1‑93 (MQ=255)
gcggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATtgtg > 1:1661292/1‑93 (MQ=255)
cggCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGc < 2:5561903/93‑1 (MQ=255)
|
ACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGC > NC_000913/1074097‑1074276
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCATC > NC_000913/1074095‑1074280
|
CCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCA > SRR4302534.2459659/1‑94 (MQ=60)
ACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTAGCGCCAGCGGAAGCGGCATT > SRR4302534.3682528/1‑94 (MQ=60)
GTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCA < SRR4302534.4379209/94‑1 (MQ=60)
AAAGATGCCGGAGGAGGTTGTAACACCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACAC < SRR4302534.2330349/94‑1 (MQ=60)
AAAGATGCCGGAGGAGGCTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACAC > SRR4302534.1030186/1‑94 (MQ=60)
AAGATGCTTGAGTAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTCGCGTTACCGCCAGCGGCAGCGGCATTCACACT > SRR4302534.4769030/1‑94 (MQ=60)
AGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTC > SRR4302534.4233174/1‑94 (MQ=60)
ATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAG < SRR4302534.3988772/94‑1 (MQ=60)
ATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAG < SRR4302534.1991613/94‑1 (MQ=60)
TGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGC > SRR4302534.6507483/1‑94 (MQ=60)
GCCGGAGGAGTTTGTAACATCCGCCGGCTACCTGTTTAACCAATATTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCT < SRR4302534.3459166/94‑1 (MQ=60)
GCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCG < SRR4302534.3729657/94‑1 (MQ=60)
CCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGA > SRR4302534.2171433/1‑94 (MQ=60)
CGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAA > SRR4302534.6160438/1‑94 (MQ=60)
AGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGGATTCACACTCAGCGAACGC > SRR4302534.5159688/1‑94 (MQ=60)
AGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGC > SRR4302534.3192769/1‑94 (MQ=60)
AGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGC > SRR4302534.5767481/1‑94 (MQ=60)
GAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTC < SRR4302534.6456460/94‑1 (MQ=60)
AGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCG < SRR4302534.5530107/94‑1 (MQ=60)
TTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATA > SRR4302534.3884220/1‑94 (MQ=60)
TAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATAC < SRR4302534.3028638/94‑1 (MQ=60)
TAACATCCTCCGCCTACCTGTTTACCCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATAC < SRR4302534.3755358/94‑1 (MQ=60)
AACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACA > SRR4302534.3303072/1‑94 (MQ=60)
AACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACA > SRR4302534.2577244/1‑94 (MQ=60)
AACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACA < SRR4302534.5912188/94‑1 (MQ=60)
ACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAG < SRR4302534.4889296/94‑1 (MQ=60)
CATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGC > SRR4302534.1168322/1‑94 (MQ=60)
ATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCC < SRR4302534.954333/94‑1 (MQ=60)
TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCG < SRR4302534.4563433/94‑1 (MQ=60)
TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCG < SRR4302534.281791/94‑1 (MQ=60)
TCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCG > SRR4302534.1903741/1‑94 (MQ=60)
CTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTT > SRR4302534.5850712/1‑94 (MQ=60)
CCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCC < SRR4302534.2778870/94‑1 (MQ=60)
GGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAG > SRR4302534.6056593/1‑94 (MQ=60)
GGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAG < SRR4302534.343934/94‑1 (MQ=60)
GGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAG > SRR4302534.4068578/1‑94 (MQ=60)
GGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAG < SRR4302534.3242485/94‑1 (MQ=60)
GGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAG > SRR4302534.5257734/1‑94 (MQ=60)
GGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGCTCCAG > SRR4302534.4547368/1‑94 (MQ=60)
TACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAG < SRR4302534.1619262/94‑1 (MQ=60)
TACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAG > SRR4302534.3311796/1‑94 (MQ=60)
TACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAG > SRR4302534.1806320/1‑94 (MQ=60)
ACCTGTTTAACCTATAGTCAGTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCGGATCCAGAAGG > SRR4302534.3293684/1‑94 (MQ=60)
CTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGAT > SRR4302534.1064112/1‑94 (MQ=60)
TGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATA > SRR4302534.1534270/1‑94 (MQ=60)
GTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATAT > SRR4302534.4886379/1‑94 (MQ=60)
GTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATAT > SRR4302534.966892/1‑94 (MQ=60)
TTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATT < SRR4302534.3717457/94‑1 (MQ=60)
TTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTG < SRR4302534.5377275/94‑1 (MQ=60)
TTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTG < SRR4302534.5655109/94‑1 (MQ=60)
AACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCT < SRR4302534.2475513/94‑1 (MQ=60)
AACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAG‑AGGATATTGCTT < SRR4302534.5617303/94‑1 (MQ=60)
ACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTT > SRR4302534.1430733/1‑94 (MQ=60)
CCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTT > SRR4302534.6166570/1‑94 (MQ=60)
CTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTC < SRR4302534.5983798/94‑1 (MQ=60)
CTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTC < SRR4302534.5782065/94‑1 (MQ=60)
TATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCG < SRR4302534.2167670/94‑1 (MQ=60)
TATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCG < SRR4302534.2739848/94‑1 (MQ=60)
TATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCG < SRR4302534.5969342/94‑1 (MQ=60)
TATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCG > SRR4302534.3755939/1‑94 (MQ=60)
ATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGC > SRR4302534.3113682/1‑94 (MQ=60)
ATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGC > SRR4302534.1766114/1‑94 (MQ=60)
TAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCC < SRR4302534.1560366/94‑1 (MQ=60)
AGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCA < SRR4302534.1561828/94‑1 (MQ=60)
AGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCA > SRR4302534.1477990/1‑94 (MQ=60)
AGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCA > SRR4302534.4025824/1‑94 (MQ=60)
TCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACG > SRR4302534.1618899/1‑94 (MQ=60)
TCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACG < SRR4302534.2910097/94‑1 (MQ=60)
TCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACG > SRR4302534.3492226/1‑94 (MQ=60)
TCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACG > SRR4302534.5627998/1‑94 (MQ=60)
CATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGG < SRR4302534.5178340/94‑1 (MQ=60)
CATTAAGCTGGCGTTACCGACAGCGGCAGCGGCATTCACACTCAGCGCACGCTCGATATAAAGCCGTTCCAGCAGGACATTCATATCGCCACGG > SRR4302534.5046181/1‑94 (MQ=60)
ATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGG > SRR4302534.3045367/1‑94 (MQ=60)
ATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGG < SRR4302534.1833445/94‑1 (MQ=60)
ATTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCAAGGG > SRR4302534.4199653/1‑94 (MQ=60)
TTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGC < SRR4302534.4822765/94‑1 (MQ=60)
TTAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCCATATACAGCCATTCCAGAAGGATATTGCTTTCGCCACGGGC > SRR4302534.4466729/1‑94 (MQ=60)
TAAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCA > SRR4302534.3903284/1‑94 (MQ=60)
AAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAA > SRR4302534.5816408/1‑94 (MQ=60)
AAGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAA > SRR4302534.5220287/1‑94 (MQ=60)
AGCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAA > SRR4302534.3058027/1‑94 (MQ=60)
GCTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAC > SRR4302534.3748826/1‑94 (MQ=60)
CTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAC > SRR4302534.5862063/1‑94 (MQ=60)
CTGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAAC < SRR4302534.3110464/94‑1 (MQ=60)
TGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACC > SRR4302534.1069536/1‑94 (MQ=60)
TGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACC > SRR4302534.5084983/1‑94 (MQ=60)
TGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACC > SRR4302534.1889050/1‑94 (MQ=60)
TGGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACC < SRR4302534.836555/94‑1 (MQ=60)
GGCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCC < SRR4302534.2630408/94‑1 (MQ=60)
GCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGACCGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCT < SRR4302534.2523371/94‑1 (MQ=60)
GCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATGCAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCT < SRR4302534.3772353/94‑1 (MQ=60)
GCGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCT < SRR4302534.2566867/94‑1 (MQ=60)
CGTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTG < SRR4302534.4112523/94‑1 (MQ=60)
GTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGC > SRR4302534.857694/1‑94 (MQ=60)
GTTACCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGC < SRR4302534.1391338/94‑1 (MQ=60)
CCGCTGGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCG < SRR4302534.681937/94‑1 (MQ=60)
CCGCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCG > SRR4302534.3663051/1‑94 (MQ=60)
GCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAA > SRR4302534.2152690/1‑94 (MQ=60)
GCCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAA > SRR4302534.5705367/1‑94 (MQ=60)
CCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAA > SRR4302534.1475367/1‑94 (MQ=60)
CCAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAA < SRR4302534.814953/94‑1 (MQ=60)
CAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAAC < SRR4302534.259892/94‑1 (MQ=60)
CAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAAC > SRR4302534.4013384/1‑94 (MQ=60)
CAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAAC > SRR4302534.2218328/1‑94 (MQ=60)
CAGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAAC > SRR4302534.959540/1‑94 (MQ=60)
AGCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACA < SRR4302534.5910260/94‑1 (MQ=60)
GCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAA > SRR4302534.1137899/1‑94 (MQ=60)
GCGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAA > SRR4302534.2303012/1‑94 (MQ=60)
CGGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAAT > SRR4302534.3652269/1‑94 (MQ=60)
GGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATT > SRR4302534.3194170/1‑94 (MQ=60)
GGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATT > SRR4302534.5818089/1‑94 (MQ=60)
GGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATT > SRR4302534.4519898/1‑94 (MQ=60)
GGCAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATT < SRR4302534.4723468/94‑1 (MQ=60)
GCAGCGTCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTG < SRR4302534.2358903/94‑1 (MQ=60)
CAGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGT > SRR4302534.6151897/1‑94 (MQ=60)
AGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTG > SRR4302534.1440720/1‑94 (MQ=60)
AGCGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTG > SRR4302534.1704563/1‑94 (MQ=60)
CGGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCC < SRR4302534.232613/94‑1 (MQ=60)
GGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCA > SRR4302534.877676/1‑94 (MQ=60)
GGCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCA > SRR4302534.5029581/1‑94 (MQ=60)
GCATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCAT > SRR4302534.2440721/1‑94 (MQ=60)
CATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCCTC < SRR4302534.6541725/94‑1 (MQ=60)
CATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCATC > SRR4302534.6645405/1‑94 (MQ=60)
CATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCATC > SRR4302534.4414488/1‑94 (MQ=60)
|
CCACGTTAAAGATGCCGGAGGAGGTTGTAACATCCTCCGGCTACCTGTTTAACCTATAGTCATTAAGCTGGCGTTACCGCCAGCGGCAGCGGTATTCACACTCAGCGAACGCTCGATATACAGCCGTTCCAGAAGGATATTGCTTTCGCCACGGGCAAAACCCTGCACCGAAACAATTGTGCCATC > NC_000913/1074095‑1074280
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
