Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,156,390	A→G	T131A (ACC→GCC)	ycfH →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,156,390	0	A	G	100.0%	929.5 / NA	270	T131A (ACC→GCC)	ycfH	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (137/133); total (137/133)

Only 100 of 279 total aligned reads displayed.

TACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATACCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGAC  >  NC_000913/1156300‑1156479

  cacGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCg                                                                                       >  2:1295948/1‑93 (MQ=255)

   acGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGt                                                                                      >  1:827521/1‑93 (MQ=255)

    cGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTg                                                                                     <  2:3207765/93‑1 (MQ=255)

     gCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGa                                                                                    <  2:81141/93‑1 (MQ=255)

     gCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGa                                                                                    <  1:4869117/93‑1 (MQ=255)

        ggAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGc                                                                                 <  2:6964397/93‑1 (MQ=255)

         gAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGcc                                                                                >  2:5717693/1‑93 (MQ=255)

         gAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGcc                                                                                <  2:6546686/93‑1 (MQ=255)

         gAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGcc                                                                                >  1:6870201/1‑93 (MQ=255)

           aaCTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCg                                                                              >  1:7019269/1‑93 (MQ=255)

           aaCTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCg                                                                              >  2:185387/1‑93 (MQ=255)

             cTAAAGTACGTCAGCAAGATACCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTg                                                                            <  2:4201509/93‑1 (MQ=255)

             cTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTg                                                                            >  1:2749912/1‑93 (MQ=255)

             cTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTg                                                                            >  1:8801095/1‑93 (MQ=255)

              tAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGc                                                                           <  1:83838/93‑1 (MQ=255)

              aaaaGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGc                                                                           <  1:7203118/92‑1 (MQ=255)

               aaaGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGcc                                                                          <  1:5273725/93‑1 (MQ=255)

                aaGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCg                                                                         <  2:1139626/93‑1 (MQ=255)

                 aGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGa                                                                        <  2:3260883/93‑1 (MQ=255)

                  gTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCgct                                                                       >  2:5886922/1‑91 (MQ=255)

                  gTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGAt                                                                       <  1:2485440/93‑1 (MQ=255)

                  gTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGAt                                                                       >  1:1708566/1‑93 (MQ=255)

                    aCGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATAc                                                                     <  2:3767517/93‑1 (MQ=255)

                     cGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACg                                                                    >  1:5788626/1‑93 (MQ=255)

                     cGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACg                                                                    <  2:3629311/93‑1 (MQ=255)

                       tCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCt                                                                  <  2:7372693/93‑1 (MQ=255)

                         aGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTgg                                                                >  1:770840/1‑93 (MQ=255)

                         aGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTgg                                                                <  1:3163854/93‑1 (MQ=255)

                         aGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTgc                                                                >  1:5078136/1‑92 (MQ=255)

                          gCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGc                                                               >  1:6461752/1‑93 (MQ=255)

                            aaGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCat                                                             >  2:7015311/1‑92 (MQ=255)

                              gagTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAAtt                                                           <  1:6216662/93‑1 (MQ=255)

                               agTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTc                                                          <  2:2339808/93‑1 (MQ=255)

                                gTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCt                                                         >  2:5534385/1‑93 (MQ=255)

                                gTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCt                                                         >  2:5534138/1‑93 (MQ=255)

                                  ccTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTgc                                                       >  1:5207874/1‑93 (MQ=255)

                                  ccTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTgc                                                       <  1:2363484/93‑1 (MQ=255)

                                  ccTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTgc                                                       <  2:2053212/93‑1 (MQ=255)

                                  ccTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTgc                                                       <  2:2172777/93‑1 (MQ=255)

                                  ccTCCATCCATCATATCCAGTTTGGCCGTGATCTAAACAAGCCGGTTATCGTCCATGCCCGTGCCGCCCGTGCCGATACTCTGGCAATTCTgc                                                       <  2:8211945/93‑1 (MQ=255)

                                   cTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTgcg                                                      <  1:1363973/93‑1 (MQ=255)

                                    ttCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTgcgc                                                     >  2:4994618/1‑93 (MQ=255)

                                    ctCACCCTTCATATCCAGATGGGTCGGGACCTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTtcgc                                                     <  2:1939232/92‑1 (MQ=255)

                                      catccatcATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCga                                                   >  2:6042276/1‑93 (MQ=255)

                                       atccatcATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCgaa                                                  <  1:4565456/93‑1 (MQ=255)

                                       atccatcATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCgaa                                                  <  2:2542636/93‑1 (MQ=255)

                                        tccatcATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATCCGCTGGCAATTCTGCGCgaag                                                 >  2:407518/1‑93 (MQ=255)

                                        tccatcATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCgaag                                                 <  1:8494847/93‑1 (MQ=255)

                                         ccatcATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCgaaga                                                <  1:5552465/93‑1 (MQ=255)

                                             catATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGaaaaa                                            >  2:729916/1‑93 (MQ=255)

                                               tatCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAgg                                          >  2:2930189/1‑92 (MQ=255)

                                               tatCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAgg                                          >  2:2377181/1‑92 (MQ=255)

                                               tatCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGt                                          <  1:3529154/93‑1 (MQ=255)

                                               tatCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGt                                          >  1:4160913/1‑93 (MQ=255)

                                               tatCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGt                                          >  2:5330740/1‑93 (MQ=255)

                                               tatCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGt                                          <  1:4781922/93‑1 (MQ=255)

                                                atCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAGGAAAAAGta                                         >  1:8021760/1‑92 (MQ=255)

                                                atCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTg                                         >  2:3025939/1‑93 (MQ=255)

                                                 tCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGa                                        >  1:5010380/1‑93 (MQ=255)

                                                  ccAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGAc                                       <  2:8285574/93‑1 (MQ=255)

                                                  ccAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGAc                                       >  2:1368831/1‑93 (MQ=255)

                                                   cAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACg                                      >  1:3078834/1‑93 (MQ=255)

                                                   cAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACg                                      >  2:440406/1‑93 (MQ=255)

                                                    aGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACgg                                     <  1:2200652/93‑1 (MQ=255)

                                                     gATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACAGa                                    >  1:7974138/1‑93 (MQ=255)

                                                      aTTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGAt                                   <  1:7286184/93‑1 (MQ=255)

                                                       ttGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGAtt                                  >  2:476067/1‑93 (MQ=255)

                                                       ttGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGAtt                                  <  2:7647745/93‑1 (MQ=255)

                                                       atGGTCGGGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGAtt                                  <  1:2455350/92‑1 (MQ=255)

                                                          gTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCg                               >  1:4508494/1‑93 (MQ=255)

                                                           tCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCgg                              <  2:398510/93‑1 (MQ=255)

                                                           gcGTTAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAGAGTGACGGATTGCgg                              <  2:8711048/92‑1 (MQ=255)

                                                            cGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGt                             <  2:8431310/93‑1 (MQ=255)

                                                            cGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGt                             <  2:1522609/93‑1 (MQ=255)

                                                             gTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTg                            <  1:33091/93‑1 (MQ=255)

                                                              tgaactgaacAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTgg                           >  1:6845942/1‑93 (MQ=255)

                                                               gaactgaacAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGc                          <  1:1125862/93‑1 (MQ=255)

                                                               gaactgaacAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGc                          <  2:2832484/93‑1 (MQ=255)

                                                                 actgaacAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGt                        >  1:4070414/1‑93 (MQ=255)

                                                                 actgaacAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGt                        <  2:1918206/93‑1 (MQ=255)

                                                                 actgaacAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGt                        <  2:4698095/93‑1 (MQ=255)

                                                                 actaaacAATGCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGt                        <  1:7295715/93‑1 (MQ=255)

                                                                   tgaacAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGtac                      >  1:6048144/1‑93 (MQ=255)

                                                                     aacAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGtacta                    <  1:5156717/93‑1 (MQ=255)

                                                                          gCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTg               <  1:5498898/93‑1 (MQ=255)

                                                                           ccGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGt              >  1:1689822/1‑93 (MQ=255)

                                                                            cGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGtt             >  2:679308/1‑93 (MQ=255)

                                                                              gTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGtttt           >  2:8630135/1‑93 (MQ=255)

                                                                              gTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGtttt           >  1:5974466/1‑93 (MQ=255)

                                                                              gTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGtttt           >  1:1931470/1‑93 (MQ=255)

                                                                               ttATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTa          >  1:1765950/1‑93 (MQ=255)

                                                                                  tCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACag       >  2:2689472/1‑93 (MQ=255)

                                                                                  tCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGCACTACACTGTTTTACag       >  1:385968/1‑93 (MQ=255)

                                                                                   cGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTTACGGATTGCGGTGGCGTACTACACTGTTTTACaga      <  1:1207410/93‑1 (MQ=255)

                                                                                   cGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACaga      <  1:7350041/93‑1 (MQ=255)

                                                                                   cGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACaga      <  2:6507534/93‑1 (MQ=255)

                                                                                    gTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACagag     <  2:7951619/93‑1 (MQ=255)

                                                                                    gTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACagag     <  1:2971668/93‑1 (MQ=255)

                                                                                      ccATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGa   >  1:5453801/1‑93 (MQ=255)

                                                                                       cATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGAc  >  1:2612058/1‑93 (MQ=255)

TACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATACCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGAC  >  NC_000913/1156300‑1156479

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATTACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATACCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGACAGAG  >  NC_000913/1156298‑1156483

ATTACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGC                                                                                              >  SRR4302541.7840373/1‑94 (MQ=60)

ATTACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACCGAACAAGCCGATTATCGTCCATGC                                                                                              >  SRR4302541.3014155/1‑94 (MQ=60)

  TACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCC                                                                                            <  SRR4302541.826424/94‑1 (MQ=60)

   ACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCG                                                                                           <  SRR4302541.8382434/94‑1 (MQ=60)

    CACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGT                                                                                          >  SRR4302541.835045/1‑94 (MQ=60)

    CACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGT                                                                                          >  SRR4302541.5602977/1‑94 (MQ=60)

       GCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGAC                                                                                       <  SRR4302541.4918786/94‑1 (MQ=60)

       GCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGAC                                                                                       <  SRR4302541.4918790/94‑1 (MQ=60)

          GGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCC                                                                                    >  SRR4302541.6943587/1‑94 (MQ=60)

           GAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCC                                                                                   >  SRR4302541.5001790/1‑94 (MQ=60)

            AAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCG                                                                                  >  SRR4302541.7093903/1‑94 (MQ=60)

            AAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCG                                                                                  <  SRR4302541.2178183/94‑1 (MQ=60)

            AAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCG                                                                                  <  SRR4302541.4150658/94‑1 (MQ=60)

              ACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTG                                                                                >  SRR4302541.806324/1‑94 (MQ=60)

              ACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTG                                                                                >  SRR4302541.8895076/1‑94 (MQ=60)

              ACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTG                                                                                >  SRR4302541.2777534/1‑94 (MQ=60)

                TAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCC                                                                              <  SRR4302541.736117/94‑1 (MQ=60)

                TAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCC                                                                              <  SRR4302541.84564/94‑1 (MQ=60)

                AAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCC                                                                              <  SRR4302541.7279967/94‑1 (MQ=60)

                 AAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCG                                                                             <  SRR4302541.5328047/94‑1 (MQ=60)

                   AGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGAT                                                                           >  SRR4302541.1725292/1‑94 (MQ=60)

                   AGTACGTCAGCAAGAGTCCTTCACCCATCATATCCAGATTCGTGGTGACCGGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGAT                                                                           <  SRR4302541.5526038/94‑1 (MQ=60)

                    GTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATA                                                                          <  SRR4302541.2510429/94‑1 (MQ=60)

                      ACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACG                                                                        >  SRR4302541.5847449/1‑94 (MQ=60)

                        GTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCT                                                                      <  SRR4302541.6102902/94‑1 (MQ=60)

                        GTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCT                                                                      >  SRR4302541.2427124/1‑94 (MQ=60)

                        GTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCT                                                                      >  SRR4302541.7142109/1‑94 (MQ=60)

                          CAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGG                                                                    >  SRR4302541.1967997/1‑94 (MQ=60)

                          CAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGG                                                                    >  SRR4302541.3010778/1‑94 (MQ=60)

                          CAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGG                                                                    >  SRR4302541.778052/1‑94 (MQ=60)

                          CAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGG                                                                    >  SRR4302541.1147271/1‑94 (MQ=60)

                          CAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGC                                                                    >  SRR4302541.5130313/1‑94 (MQ=60)

                           AGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGC                                                                   >  SRR4302541.6527603/1‑94 (MQ=60)

                           AGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGC                                                                   >  SRR4302541.6994002/1‑94 (MQ=60)

                           AGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGC                                                                   <  SRR4302541.3195800/94‑1 (MQ=60)

                             CAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAA                                                                 >  SRR4302541.5465798/1‑94 (MQ=60)

                                GAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTC                                                              <  SRR4302541.6280191/94‑1 (MQ=60)

                                 AGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCT                                                             <  SRR4302541.616067/94‑1 (MQ=60)

                                 AGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGAAATTCT                                                             >  SRR4302541.3036249/1‑94 (MQ=60)

                                  GTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTG                                                            <  SRR4302541.8521301/94‑1 (MQ=60)

                                   TCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGC                                                           >  SRR4302541.5261531/1‑94 (MQ=60)

                                    CCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCG                                                          <  SRR4302541.2386527/94‑1 (MQ=60)

                                     CTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGC                                                         <  SRR4302541.2626449/94‑1 (MQ=60)

                                     CTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGC                                                         >  SRR4302541.5093294/1‑94 (MQ=60)

                                     CTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGC                                                         >  SRR4302541.5576271/1‑94 (MQ=60)

                                     CTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGC                                                         >  SRR4302541.2803721/1‑94 (MQ=60)

                                     CTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGC                                                         <  SRR4302541.1377414/94‑1 (MQ=60)

                                     CTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGACGGTTATCGTCCATGCGCGTGACGCCCGTGCCGATAGGATGGCCATTCTGCGG                                                         >  SRR4302541.8878759/1‑94 (MQ=60)

                                        CATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAA                                                      >  SRR4302541.3809260/1‑94 (MQ=60)

                                         ATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAG                                                     <  SRR4302541.4611685/94‑1 (MQ=60)

                                          TCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGA                                                    >  SRR4302541.5238365/1‑94 (MQ=60)

                                          TCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGA                                                    >  SRR4302541.5238367/1‑94 (MQ=60)

                                          TCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGA                                                    <  SRR4302541.8586368/94‑1 (MQ=60)

                                           CCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAA                                                   <  SRR4302541.5609304/94‑1 (MQ=60)

                                           CCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAA                                                   >  SRR4302541.5126535/1‑94 (MQ=60)

                                             ATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCTCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAA                                                 >  SRR4302541.8065009/1‑94 (MQ=60)

                                             ATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAA                                                 >  SRR4302541.1458297/1‑94 (MQ=60)

                                               CATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAG                                               <  SRR4302541.5497036/94‑1 (MQ=60)

                                               CATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAG                                               <  SRR4302541.7085096/94‑1 (MQ=60)

                                                ATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGT                                              >  SRR4302541.4202093/1‑94 (MQ=60)

                                                ATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGT                                              <  SRR4302541.3311820/94‑1 (MQ=60)

                                                 TATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAGGAAAAAGTA                                             >  SRR4302541.8109951/1‑94 (MQ=60)

                                                 TATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTG                                             <  SRR4302541.4830732/94‑1 (MQ=60)

                                                 TATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTG                                             <  SRR4302541.3564692/94‑1 (MQ=60)

                                                 TATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTG                                             >  SRR4302541.1714493/1‑94 (MQ=60)

                                                  ATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGA                                            <  SRR4302541.3269133/94‑1 (MQ=60)

                                                  ATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGA                                            >  SRR4302541.5061883/1‑94 (MQ=60)

                                                  ATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGA                                            <  SRR4302541.616600/94‑1 (MQ=60)

                                                  ACCCAGGTTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGA                                            <  SRR4302541.2357647/94‑1 (MQ=60)

                                                  ACCCACATTGGTCGTGAGCTGATCAAGCCGGTTATCGTCCATGCCCGTGACACCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGA                                            <  SRR4302541.96763/94‑1 (MQ=60)

                                                   TCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGAC                                           <  SRR4302541.4572286/94‑1 (MQ=60)

                                                    CCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACG                                          >  SRR4302541.3110079/1‑94 (MQ=60)

                                                    CCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACG                                          <  SRR4302541.8029815/94‑1 (MQ=60)

                                                    CCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACG                                          >  SRR4302541.3110080/1‑94 (MQ=60)

                                                    CCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACG                                          <  SRR4302541.423914/94‑1 (MQ=60)

                                                    CCAGATAGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACG                                          <  SRR4302541.7443796/94‑1 (MQ=60)

                                                     CGGATTGGTCGTGAACCGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGG                                         <  SRR4302541.7114979/94‑1 (MQ=60)

                                                      AGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGA                                        <  SRR4302541.3425365/94‑1 (MQ=60)

                                                      AGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGA                                        >  SRR4302541.898285/1‑94 (MQ=60)

                                                      AGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGA                                        <  SRR4302541.2221956/94‑1 (MQ=60)

                                                      AGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACAGA                                        >  SRR4302541.8061998/1‑94 (MQ=60)

                                                        ATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAttaacggatg                                      >  SRR4302541.2741514/1‑84 (MQ=60)

                                                        ATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATT                                      <  SRR4302541.2256767/94‑1 (MQ=60)

                                                        ATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATT                                      <  SRR4302541.7363937/94‑1 (MQ=60)

                                                        ATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATT                                      <  SRR4302541.3968413/94‑1 (MQ=60)

                                                        ATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATT                                      >  SRR4302541.3360589/1‑94 (MQ=60)

                                                         ATGGTCGGGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTG                                     <  SRR4302541.2479797/94‑1 (MQ=60)

                                                           GGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCG                                   >  SRR4302541.4553985/1‑94 (MQ=60)

                                                           GGTCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGAAGCCCGTGCCGATACGCTGGCAATCCTGCGCGAAGAAAAAGTGACGGATGGCG                                   >  SRR4302541.4553986/1‑94 (MQ=60)

                                                             TCGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGT                                 <  SRR4302541.4678870/94‑1 (MQ=60)

                                                              CGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGtcg                                >  SRR4302541.6773450/1‑91 (MQ=60)

                                                              CGTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTG                                >  SRR4302541.4802849/1‑94 (MQ=60)

                                                               GTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGG                               >  SRR4302541.6919136/1‑94 (MQ=60)

                                                               GTGAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGG                               <  SRR4302541.33348/94‑1 (MQ=60)

                                                                TGACCTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGC                              <  SRR4302541.7391890/94‑1 (MQ=60)

                                                                 GAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCG                             <  SRR4302541.409891/94‑1 (MQ=60)

                                                                 GAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCG                             <  SRR4302541.6361629/94‑1 (MQ=60)

                                                                 GAACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCG                             <  SRR4302541.1136487/94‑1 (MQ=60)

                                                                 GAACAGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGAAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCG                             <  SRR4302541.2481433/94‑1 (MQ=60)

                                                                  AACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGT                            >  SRR4302541.4110590/1‑94 (MQ=60)

                                                                  AACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGCGGCGT                            >  SRR4302541.2916040/1‑94 (MQ=60)

                                                                   ACTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTA                           <  SRR4302541.5729083/94‑1 (MQ=60)

                                                                   ACTAAACAATGCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTA                           <  SRR4302541.7373583/94‑1 (MQ=60)

                                                                    CTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTAC                          >  SRR4302541.6109996/1‑94 (MQ=60)

                                                                    CTGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTAC                          >  SRR4302541.1663851/1‑94 (MQ=60)

                                                                    CCGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTAC                          <  SRR4302541.1227436/94‑1 (MQ=60)

                                                                     TGAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACT                         >  SRR4302541.8577939/1‑94 (MQ=60)

                                                                      GAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTA                        >  SRR4302541.6926570/1‑94 (MQ=60)

                                                                      GAACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTA                        <  SRR4302541.4951900/94‑1 (MQ=60)

                                                                       AACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTAC                       >  SRR4302541.2567760/1‑94 (MQ=60)

                                                                       AACAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTAC                       <  SRR4302541.5209768/94‑1 (MQ=60)

                                                                         CAAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACAC                     >  SRR4302541.6079739/1‑94 (MQ=60)

                                                                          AAGCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACT                    <  SRR4302541.5165171/94‑1 (MQ=60)

                                                                            GCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGT                  <  SRR4302541.5555237/94‑1 (MQ=60)

                                                                            GCCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGT                  >  SRR4302541.1706417/1‑94 (MQ=60)

                                                                             CCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTT                 >  SRR4302541.1748648/1‑94 (MQ=60)

                                                                             CCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTT                 >  SRR4302541.1238000/1‑94 (MQ=60)

                                                                             CCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTT                 >  SRR4302541.8679140/1‑94 (MQ=60)

                                                                             CCGGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTT                 >  SRR4302541.179753/1‑94 (MQ=60)

                                                                               GGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTT               >  SRR4302541.1950070/1‑94 (MQ=60)

                                                                               GGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTT               >  SRR4302541.6035467/1‑94 (MQ=60)

                                                                               GGTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTT               >  SRR4302541.775507/1‑94 (MQ=60)

                                                                                GTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTA              <  SRR4302541.5136823/94‑1 (MQ=60)

                                                                                GTTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTA              >  SRR4302541.1783129/1‑94 (MQ=60)

                                                                                 TTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTTGCGTACTACACTGCTTTAC             >  SRR4302541.1720319/1‑94 (MQ=60)

                                                                                 TTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTAC             >  SRR4302541.7314755/1‑94 (MQ=60)

                                                                                 TTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTAC             >  SRR4302541.5932095/1‑94 (MQ=60)

                                                                                 TTATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTAC             >  SRR4302541.7318979/1‑94 (MQ=60)

                                                                                 TGATCGTGCATGCCCGTGACCCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTAC             <  SRR4302541.2776266/94‑1 (MQ=60)

                                                                                  TATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACA            <  SRR4302541.8050435/94‑1 (MQ=60)

                                                                                   ATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAG           <  SRR4302541.7417823/94‑1 (MQ=60)

                                                                                   ATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGCACTACACTGTTTTACAG           >  SRR4302541.389532/1‑94 (MQ=60)

                                                                                   ATCGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGCACTACACTGTTTTACAG           >  SRR4302541.389531/1‑94 (MQ=60)

                                                                                     CGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTTACGGATTGCGGTGGCGTACTACACTGTTTTACAGAG         <  SRR4302541.1219155/94‑1 (MQ=60)

                                                                                     CGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAG         <  SRR4302541.5552746/94‑1 (MQ=60)

                                                                                     CGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAG         <  SRR4302541.7428562/94‑1 (MQ=60)

                                                                                     CGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAG         <  SRR4302541.8412175/94‑1 (MQ=60)

                                                                                     CGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAG         >  SRR4302541.1802703/1‑94 (MQ=60)

                                                                                     CGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAG         >  SRR4302541.671082/1‑94 (MQ=60)

                                                                                     CGTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAG         <  SRR4302541.4324660/94‑1 (MQ=60)

                                                                                      GTCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGG        <  SRR4302541.3001616/94‑1 (MQ=60)

                                                                                       TCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGA       >  SRR4302541.5509753/1‑94 (MQ=60)

                                                                                       TCCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGA       >  SRR4302541.2447376/1‑94 (MQ=60)

                                                                                        CCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGAC      >  SRR4302541.2638164/1‑94 (MQ=60)

                                                                                        CCATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGAC      <  SRR4302541.5634721/94‑1 (MQ=60)

                                                                                         CATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGACA     >  SRR4302541.1484170/1‑94 (MQ=60)

                                                                                          ATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGGGTACTACACTGTTTTACAGAGGGCAG    >  SRR4302541.1395909/1‑94 (MQ=60)

                                                                                          ATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGACAG    <  SRR4302541.1277864/94‑1 (MQ=60)

                                                                                          ATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGACAG    >  SRR4302541.7070960/1‑94 (MQ=60)

                                                                                          ATGCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGACAG    >  SRR4302541.7359762/1‑94 (MQ=60)

                                                                                            GCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGACAGAG  <  SRR4302541.8254077/94‑1 (MQ=60)

                                                                                            GCCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGACAGAG  <  SRR4302541.5968343/94‑1 (MQ=60)

ATTACACGCCGGAAACTAAAGTACGTCAGCAAGAGTCCTTCATCCATCATATCCAGATTGGTCGTGAACTGAACAAGCCGGTTATCGTCCATACCCGTGACGCCCGTGCCGATACGCTGGCAATTCTGCGCGAAGAAAAAGTGACGGATTGCGGTGGCGTACTACACTGTTTTACAGAGGACAGAG  >  NC_000913/1156298‑1156483

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`