Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,396,204 T→C Q148R (CAG→CGG)  ydaA ← hypothetical protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,396,2040TC99.7% 1079.9 / ‑5.7 317Q148R (CAG→CGG) ydaAhypothetical protein
Reads supporting (aligned to +/- strand):  ref base T (1/0);  new base C (166/150);  total (167/150)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01

Only 100 of 345 total aligned reads displayed.

TTTGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCTGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGT  >  NC_000913/1396113‑1396293
                                                                                           |                                                                                         
 ttGACCAGTTTTTCATTGAGCGCTGTATGATACGGCTCTTCACTGGCGAGATTCCCCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCgg                                                                                         <  2:4758693/93‑1 (MQ=255)
   gACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTc                                                                                       >  2:4983035/1‑93 (MQ=255)
    aCCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGCTTCACCGCCACCAGCGCCTTGTCTCCTTCCGGCCACGGCCGGTCt                                                                                      >  2:6899209/1‑93 (MQ=255)
    aCCAGTTTTTCATTGAGCGCATTATGATACGGCGCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCt                                                                                      <  1:8488503/93‑1 (MQ=255)
     ccAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACGGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCtt                                                                                     >  1:6492952/1‑93 (MQ=255)
      cAGTTTTTCATTTAGCGCATTATGATTCGGCTCTTCACTGGCGAGATTCACTGCCACCAGCGCCTTGCCTCCTTCCGGCCATggtcggtccgt                                                                                    >  2:7841659/1‑90 (MQ=255)
      cAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCttt                                                                                    >  1:6980933/1‑93 (MQ=255)
      cAGTTTTTCATTGAGCGCATTATGATAAGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGGCGGTCttt                                                                                    >  2:456646/1‑93 (MQ=255)
       aGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTc                                                                                   <  1:430645/93‑1 (MQ=255)
        gTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCa                                                                                  >  1:356838/1‑93 (MQ=255)
         tttttCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCAc                                                                                 >  1:3836524/1‑93 (MQ=255)
          ttttCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCAcc                                                                                <  1:6175855/93‑1 (MQ=255)
          ttttCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCAcc                                                                                <  1:3380795/93‑1 (MQ=255)
            ttCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCAACGGCCGGTCTTTCACCAt                                                                              >  1:7417591/1‑93 (MQ=255)
             tCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATc                                                                             >  1:8239403/1‑93 (MQ=255)
              cATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATcc                                                                            >  1:3335056/1‑93 (MQ=255)
              cATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATcc                                                                            >  1:985558/1‑93 (MQ=255)
              cATTGAGCCCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATcc                                                                            <  2:7252893/93‑1 (MQ=255)
               aTTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCca                                                                           >  1:6033747/1‑93 (MQ=255)
                   aGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACAcc                                                                       >  1:5320083/1‑93 (MQ=255)
                    gcgcATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCg                                                                      <  2:6745631/93‑1 (MQ=255)
                    gcgcATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCg                                                                      <  2:6048695/93‑1 (MQ=255)
                     cgcATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCgg                                                                     <  2:4182420/93‑1 (MQ=255)
                     cgcATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCgg                                                                     <  1:3291845/93‑1 (MQ=255)
                       cATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGc                                                                   <  2:5722493/93‑1 (MQ=255)
                        aTTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCt                                                                  <  1:2443074/93‑1 (MQ=255)
                        aTTATGATACGCCTCTTGACTGGCGAGATGCTCCGCCGCCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCt                                                                  <  1:4573964/93‑1 (MQ=255)
                         ttATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCtt                                                                 <  1:7981221/93‑1 (MQ=255)
                         ttATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCtt                                                                 >  1:5612254/1‑93 (MQ=255)
                          tATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTg                                                                >  2:4001850/1‑93 (MQ=255)
                           aTGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTgg                                                               <  2:3661567/93‑1 (MQ=255)
                           aTGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTgg                                                               <  2:3803427/93‑1 (MQ=255)
                           aTGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTgg                                                               <  1:8405617/93‑1 (MQ=255)
                            tGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTggg                                                              >  1:582334/1‑93 (MQ=255)
                               tACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCAt                                                           >  1:8330222/1‑93 (MQ=255)
                                aCGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCAtt                                                          <  1:7771716/93‑1 (MQ=255)
                                aCGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCAtt                                                          <  1:2377066/93‑1 (MQ=255)
                                 cGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCAttt                                                         >  2:5941994/1‑93 (MQ=255)
                                   gCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGc                                                       <  1:2089974/93‑1 (MQ=255)
                                    ctctTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCg                                                      >  1:8773969/1‑93 (MQ=255)
                                    ctctTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCg                                                      >  1:2854951/1‑93 (MQ=255)
                                    ctctTCACTGGCAAGATTCACCGCCACCAGAGCCTTGCCTCCTTGCGGCCACGGCCGGACTTTCACCATCCACACCTCGCTCTGGCATTTGct                                                      >  2:2520210/1‑92 (MQ=255)
                                     tctTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGt                                                     >  1:5207081/1‑93 (MQ=255)
                                     tctTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGt                                                     >  2:8217016/1‑93 (MQ=255)
                                      ctTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTa                                                    <  1:8157512/93‑1 (MQ=255)
                                       ttCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTaa                                                   >  2:3320385/1‑93 (MQ=255)
                                       ttCAATGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTaa                                                   >  2:6787765/1‑93 (MQ=255)
                                        tCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAAc                                                  <  2:8704363/93‑1 (MQ=255)
                                          aCTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAg                                                >  1:1244601/1‑93 (MQ=255)
                                           cTGGCGAGATTCCCCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGCCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGa                                               <  2:8023251/93‑1 (MQ=255)
                                           cTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGa                                               <  2:309563/93‑1 (MQ=255)
                                             gacGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGTCCGGTCTTTCACCATCCACGCCGGGCTTGGGCATTTGCGTAACAGATg                                             <  2:738095/91‑1 (MQ=255)
                                              gCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACTGGGCTTGGGCATTTGCGTAACAGATGc                                            <  2:6561402/93‑1 (MQ=255)
                                                gagaTTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCa                                          >  2:7584380/1‑93 (MQ=255)
                                                gagaTTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCa                                          >  1:7600363/1‑93 (MQ=255)
                                                 agaTTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAg                                         >  1:1383144/1‑93 (MQ=255)
                                                  aaTTCCCCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACTCCGGGCTTGGGCATTTGCGTAACAGATGCCAGt                                        <  1:6578829/92‑1 (MQ=255)
                                                   aTTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTc                                       <  2:1891123/93‑1 (MQ=255)
                                                      cACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGt                                    <  2:54054/93‑1 (MQ=255)
                                                       ccccccaccaGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGtt                                   <  1:1789383/89‑1 (MQ=255)
                                                        ccGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTg                                  <  2:7700275/93‑1 (MQ=255)
                                                         caccaacaGCGCCTTGCCCCCTTCCGCCCACGCCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTgg                                 <  1:4203971/91‑1 (MQ=255)
                                                         cGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTgg                                 >  1:4712987/1‑93 (MQ=255)
                                                          gCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGc                                >  1:5416263/1‑93 (MQ=255)
                                                            caccaGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGt                              >  1:498146/1‑93 (MQ=255)
                                                              ccaGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTaa                            >  1:6406338/1‑93 (MQ=255)
                                                               caGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTaaa                           <  2:3778936/93‑1 (MQ=255)
                                                                  cgcCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCGCCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAAt                        <  2:2226538/93‑1 (MQ=255)
                                                                  cgcCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAAt                        >  2:4888608/1‑93 (MQ=255)
                                                                   gcCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGCCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATc                       <  1:1022085/93‑1 (MQ=255)
                                                                    ccTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCa                      <  2:6228950/93‑1 (MQ=255)
                                                                    ccTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCa                      >  1:5915713/1‑93 (MQ=255)
                                                                     cTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCAc                     <  1:1876428/93‑1 (MQ=255)
                                                                     cTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCAc                     <  1:6695951/93‑1 (MQ=255)
                                                                      ttGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCAcc                    >  2:5824605/1‑93 (MQ=255)
                                                                      ttGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCAcc                    >  1:8581113/1‑93 (MQ=255)
                                                                      ttGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCAcc                    >  1:3993291/1‑93 (MQ=255)
                                                                       tGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCg                   >  1:45163/1‑93 (MQ=255)
                                                                          ctcctTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCtt                >  1:4800560/1‑93 (MQ=255)
                                                                           tcctTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTc               <  2:7094124/93‑1 (MQ=255)
                                                                           tcctTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTc               >  1:5648024/1‑93 (MQ=255)
                                                                           tcctTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTc               >  2:268127/1‑93 (MQ=255)
                                                                             ctTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCa             <  2:1070109/93‑1 (MQ=255)
                                                                             ctTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCa             <  2:2919810/93‑1 (MQ=255)
                                                                              ttCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAg            >  1:66696/1‑93 (MQ=255)
                                                                               tCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGa           <  1:2227678/93‑1 (MQ=255)
                                                                                ccGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGAc          <  2:6420386/93‑1 (MQ=255)
                                                                                ccGGCCACGCCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGAc          <  2:4429620/93‑1 (MQ=255)
                                                                                 cGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACg         >  2:8442634/1‑93 (MQ=255)
                                                                                   gCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGt       <  2:152303/93‑1 (MQ=255)
                                                                                     cACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCa     <  1:3085569/93‑1 (MQ=255)
                                                                                     cACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCa     <  1:4216283/93‑1 (MQ=255)
                                                                                      gcGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTACGTTGGCGTAAAAATCACCGCTTCCAGACGGTCAt    <  2:2332896/92‑1 (MQ=255)
                                                                                      aCGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCAt    <  2:3589866/93‑1 (MQ=255)
                                                                                      aCGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATGTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCAt    <  1:2019772/93‑1 (MQ=255)
                                                                                       cGGCCGGTCTTTCGCCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATg   <  1:509821/93‑1 (MQ=255)
                                                                                       cGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATg   <  1:1504312/93‑1 (MQ=255)
                                                                                        ggCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGt  <  2:2025584/93‑1 (MQ=255)
                                                                                        ggCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGt  <  1:1112885/93‑1 (MQ=255)
                                                                                        ggCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGt  <  1:6787765/93‑1 (MQ=255)
                                                                                           |                                                                                         
TTTGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCTGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGT  >  NC_000913/1396113‑1396293

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output Only 200 of 207 total aligned reads displayed.
CTTTGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCTGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTTGGT  >  NC_000913/1396112‑1396297
                                                                                            |                                                                                             
CTTTGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGGCGACAGAGCCTTGCCTCCTTCCGGCCACGGCTG                                                                                              >  SRR4302541.897585/1‑94 (MQ=60)
CTTTGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCG                                                                                              >  SRR4302541.83847/1‑94 (MQ=60)
CTTTGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCG                                                                                              >  SRR4302541.902505/1‑94 (MQ=60)
CTTTGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCG                                                                                              <  SRR4302541.4322032/94‑1 (MQ=60)
   TGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCTGGTC                                                                                           >  SRR4302541.756737/1‑94 (MQ=60)
   TGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTC                                                                                           >  SRR4302541.483816/1‑94 (MQ=60)
   TGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTC                                                                                           >  SRR4302541.5450421/1‑94 (MQ=60)
   TGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTC                                                                                           >  SRR4302541.2418162/1‑94 (MQ=60)
   TGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTC                                                                                           >  SRR4302541.4450520/1‑94 (MQ=60)
   TGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGAGCCTTGCCTCCTTCCGGCCACGGCCGGTC                                                                                           >  SRR4302541.2357119/1‑94 (MQ=60)
    GACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCT                                                                                          >  SRR4302541.3237622/1‑94 (MQ=60)
     ACCAGTTTTTCATTGAGCGCATTATGCTACGGCTCTTTACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTT                                                                                         >  SRR4302541.7554608/1‑94 (MQ=60)
     ACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACGGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTT                                                                                         >  SRR4302541.6559139/1‑94 (MQ=60)
     ACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTT                                                                                         >  SRR4302541.6941685/1‑94 (MQ=60)
     ACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTT                                                                                         >  SRR4302541.3220112/1‑94 (MQ=60)
     ACCAGTTTTTCATTGAGCGCATTATGATACGGCGCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTT                                                                                         <  SRR4302541.8579978/94‑1 (MQ=60)
      CCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTT                                                                                        >  SRR4302541.7055304/1‑94 (MQ=60)
      CCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTT                                                                                        >  SRR4302541.4257811/1‑94 (MQ=60)
      CCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTT                                                                                        >  SRR4302541.919093/1‑94 (MQ=60)
      CCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTT                                                                                        <  SRR4302541.5977486/94‑1 (MQ=60)
        AGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCA                                                                                      >  SRR4302541.8647534/1‑94 (MQ=60)
        AGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCA                                                                                      <  SRR4302541.434693/94‑1 (MQ=60)
        AGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCA                                                                                      >  SRR4302541.360065/1‑94 (MQ=60)
         GTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCAC                                                                                     >  SRR4302541.3875171/1‑94 (MQ=60)
          TTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACC                                                                                    >  SRR4302541.7777516/1‑94 (MQ=60)
          TTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACC                                                                                    >  SRR4302541.6963592/1‑94 (MQ=60)
           TTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCA                                                                                   >  SRR4302541.4318874/1‑94 (MQ=60)
           TTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCA                                                                                   <  SRR4302541.6238951/94‑1 (MQ=60)
           TTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCA                                                                                   <  SRR4302541.3414498/94‑1 (MQ=60)
            TTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCAACGGCCGGTCTTTCACCAT                                                                                  >  SRR4302541.7496911/1‑94 (MQ=60)
             TTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATC                                                                                 <  SRR4302541.8100485/94‑1 (MQ=60)
             TTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATC                                                                                 >  SRR4302541.8329194/1‑94 (MQ=60)
              TCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCC                                                                                >  SRR4302541.3368439/1‑94 (MQ=60)
              TCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCC                                                                                <  SRR4302541.5681690/94‑1 (MQ=60)
               CATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCA                                                                               >  SRR4302541.6738460/1‑94 (MQ=60)
               CATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCA                                                                               >  SRR4302541.3645159/1‑94 (MQ=60)
               CATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCA                                                                               >  SRR4302541.6095529/1‑94 (MQ=60)
                 TTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACA                                                                             >  SRR4302541.5214273/1‑94 (MQ=60)
                   GAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACC                                                                           >  SRR4302541.5374843/1‑94 (MQ=60)
                   GAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACC                                                                           >  SRR4302541.1847979/1‑94 (MQ=60)
                    AGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCG                                                                          >  SRR4302541.1951858/1‑94 (MQ=60)
                    AGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCG                                                                          >  SRR4302541.5093657/1‑94 (MQ=60)
                    AGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCG                                                                          <  SRR4302541.779394/94‑1 (MQ=60)
                    AGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCG                                                                          >  SRR4302541.4710747/1‑94 (MQ=60)
                    AGCGCATTATGAGACGGCTCTTCACTGGCGATATTCACCTCCGCCAGCGCCTTGCCTCCTTCCGGCCACGTCCGGTCTTTCACCATCCACACCG                                                                          <  SRR4302541.5260215/94‑1 (MQ=60)
                     GCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGG                                                                         <  SRR4302541.1149536/94‑1 (MQ=60)
                      CGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGG                                                                        <  SRR4302541.3324983/94‑1 (MQ=60)
                      CGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGGCTTTCACCATCCACAGCGGG                                                                        >  SRR4302541.3519453/1‑94 (MQ=60)
                       GCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGC                                                                       >  SRR4302541.2218927/1‑94 (MQ=60)
                       GCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGC                                                                       >  SRR4302541.3842138/1‑94 (MQ=60)
                        CATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCT                                                                      <  SRR4302541.5573580/94‑1 (MQ=60)
                         ATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTT                                                                     <  SRR4302541.4620289/94‑1 (MQ=60)
                         ATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTT                                                                     >  SRR4302541.5669705/1‑94 (MQ=60)
                         ATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTT                                                                     >  SRR4302541.6501887/1‑94 (MQ=60)
                         ATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTT                                                                     >  SRR4302541.4967915/1‑94 (MQ=60)
                         ATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTT                                                                     <  SRR4302541.2467309/94‑1 (MQ=60)
                         ATTATGATACGCCTCTTGACTGGCGAGATGCTCCGCCGCCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTT                                                                     <  SRR4302541.4620290/94‑1 (MQ=60)
                          TTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTG                                                                    >  SRR4302541.8354925/1‑94 (MQ=60)
                          TTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTG                                                                    <  SRR4302541.6613052/94‑1 (MQ=60)
                          TTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTG                                                                    <  SRR4302541.8069136/94‑1 (MQ=60)
                          TTATGATACGCCTCTTCACTGGCGAGATGCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTG                                                                    <  SRR4302541.6613053/94‑1 (MQ=60)
                           TATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGG                                                                   <  SRR4302541.7856962/94‑1 (MQ=60)
                           TATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGG                                                                   <  SRR4302541.5320164/94‑1 (MQ=60)
                            ATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGG                                                                  <  SRR4302541.8496541/94‑1 (MQ=60)
                            ATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGG                                                                  >  SRR4302541.587823/1‑94 (MQ=60)
                             TGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGC                                                                 <  SRR4302541.6226786/94‑1 (MQ=60)
                             TGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGC                                                                 >  SRR4302541.3638063/1‑94 (MQ=60)
                              GATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCA                                                                >  SRR4302541.3376541/1‑94 (MQ=60)
                               ATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGGCGGTCTTTCACCATCCAGACCGGGCTTGGGCAT                                                               >  SRR4302541.8420706/1‑94 (MQ=60)
                               ATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCAT                                                               >  SRR4302541.8420705/1‑94 (MQ=60)
                               ATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCAT                                                               <  SRR4302541.8093723/94‑1 (MQ=60)
                               ATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCAT                                                               <  SRR4302541.2181972/94‑1 (MQ=60)
                               ATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCAT                                                               <  SRR4302541.4592099/94‑1 (MQ=60)
                                TACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATT                                                              >  SRR4302541.783184/1‑94 (MQ=60)
                                 TCGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTT                                                             <  SRR4302541.2898771/94‑1 (MQ=60)
                                 ACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTT                                                             >  SRR4302541.5819306/1‑94 (MQ=60)
                                 ACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTT                                                             <  SRR4302541.7854387/94‑1 (MQ=60)
                                 ACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTT                                                             <  SRR4302541.7453088/94‑1 (MQ=60)
                                 ACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTT                                                             <  SRR4302541.2400293/94‑1 (MQ=60)
                                 ACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTCGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTT                                                             <  SRR4302541.5241193/94‑1 (MQ=60)
                                  CGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTTCCTCCTTCCGGCCACGCCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTG                                                            <  SRR4302541.1439963/94‑1 (MQ=60)
                                  CGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTG                                                            <  SRR4302541.8340956/94‑1 (MQ=60)
                                   GGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGC                                                           <  SRR4302541.5713081/94‑1 (MQ=60)
                                    GCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCG                                                          >  SRR4302541.8867759/1‑94 (MQ=60)
                                    GCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCG                                                          >  SRR4302541.2883654/1‑94 (MQ=60)
                                    GCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCG                                                          <  SRR4302541.1148376/94‑1 (MQ=60)
                                     CTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCGTTTGCGT                                                         >  SRR4302541.6812308/1‑94 (MQ=60)
                                     CTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGT                                                         >  SRR4302541.5260726/1‑94 (MQ=60)
                                     CTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGT                                                         >  SRR4302541.4200638/1‑94 (MQ=60)
                                     CTCTTCACTGGCGAGATTCACCGCCACCAGCCCCTTGCCTCCTTCCGGCCACGGCTGGTCTTTCACCACCCACACCGGGCTTGGGCCTTTGCGA                                                         >  SRR4302541.2513834/1‑94 (MQ=60)
                                      TGTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTA                                                        >  SRR4302541.6268331/1‑94 (MQ=60)
                                      TCTTCACTGGCGAGATTCACCGCGACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTA                                                        >  SRR4302541.1499751/1‑94 (MQ=60)
                                       CTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAA                                                       >  SRR4302541.8109325/1‑94 (MQ=60)
                                       CTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAA                                                       <  SRR4302541.2040274/94‑1 (MQ=60)
                                        TTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCCCCATCCCAACCGGGCTTGGGCAGTTGCGTACC                                                      >  SRR4302541.6807845/1‑94 (MQ=60)
                                        TTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAAC                                                      <  SRR4302541.2247433/94‑1 (MQ=60)
                                          CACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAG                                                    <  SRR4302541.4877433/94‑1 (MQ=60)
                                          CACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAG                                                    >  SRR4302541.3041763/1‑94 (MQ=60)
                                          CACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAG                                                    >  SRR4302541.1256930/1‑94 (MQ=60)
                                          CACTGGCGAGATTCACCGCCACCAGCGCCCTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAG                                                    >  SRR4302541.487806/1‑94 (MQ=60)
                                           ACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGA                                                   >  SRR4302541.4184479/1‑94 (MQ=60)
                                            CTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGAT                                                  <  SRR4302541.8455266/94‑1 (MQ=60)
                                               GCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCC                                               >  SRR4302541.2020678/1‑94 (MQ=60)
                                                CGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCA                                              <  SRR4302541.4382198/94‑1 (MQ=60)
                                                CGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCA                                              >  SRR4302541.5762072/1‑94 (MQ=60)
                                                CGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCA                                              >  SRR4302541.7681576/1‑94 (MQ=60)
                                                 GAGATTCACCGCCACCAGCTCCTTGTCTCCTTCCGGCAACGGACGATCTTTCACCACCCAAACCGGGCTTGGGCATTTGCGTAACAGATGACAG                                             >  SRR4302541.2424381/1‑94 (MQ=55)
                                                 GAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAG                                             >  SRR4302541.1396718/1‑94 (MQ=60)
                                                 GAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAG                                             >  SRR4302541.2830821/1‑94 (MQ=60)
                                                 GAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAG                                             <  SRR4302541.2452759/94‑1 (MQ=60)
                                                  AGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGT                                            >  SRR4302541.1318879/1‑94 (MQ=60)
                                                   GATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTC                                           <  SRR4302541.340284/94‑1 (MQ=60)
                                                   AATTCCCCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACTCCGGGCTTGGGCATTTGCGTAACAGATGCCAGTC                                           <  SRR4302541.6646157/94‑1 (MQ=60)
                                                    ATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCC                                          <  SRR4302541.683803/94‑1 (MQ=60)
                                                    ATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCC                                          <  SRR4302541.99259/94‑1 (MQ=60)
                                                    ATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCC                                          <  SRR4302541.8477484/94‑1 (MQ=60)
                                                    ATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCC                                          >  SRR4302541.4728806/1‑94 (MQ=60)
                                                     TTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCG                                         >  SRR4302541.6250637/1‑94 (MQ=60)
                                                      TCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGT                                        >  SRR4302541.8286183/1‑94 (MQ=60)
                                                      TCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGT                                        >  SRR4302541.5271409/1‑94 (MQ=60)
                                                      TCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGT                                        >  SRR4302541.5442039/1‑94 (MQ=60)
                                                       CACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTT                                       <  SRR4302541.1052852/94‑1 (MQ=60)
                                                       CACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTT                                       <  SRR4302541.1547806/94‑1 (MQ=60)
                                                        ccccCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTG                                      <  SRR4302541.1806768/90‑1 (MQ=60)
                                                        CCCGCCGCCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTG                                      <  SRR4302541.3399199/94‑1 (MQ=60)
                                                        ACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTG                                      >  SRR4302541.1042510/1‑94 (MQ=60)
                                                         CCGCCCCCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGG                                     <  SRR4302541.6076545/94‑1 (MQ=60)
                                                         CCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGG                                     >  SRR4302541.4761033/1‑94 (MQ=60)
                                                         CCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGG                                     <  SRR4302541.3876331/94‑1 (MQ=60)
                                                          CGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGC                                    >  SRR4302541.5471821/1‑94 (MQ=60)
                                                          CGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGC                                    <  SRR4302541.4245769/94‑1 (MQ=60)
                                                          CACCAACAGCGCCTTGCCCCCTTCCGCCCACGCCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGC                                    <  SRR4302541.4245768/94‑1 (MQ=60)
                                                            CCACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGT                                  >  SRR4302541.502836/1‑94 (MQ=60)
                                                             CACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGGCAGTCCGGTGGCGTA                                 >  SRR4302541.1580384/1‑94 (MQ=60)
                                                             CACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTA                                 <  SRR4302541.4284762/94‑1 (MQ=60)
                                                              ACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAA                                >  SRR4302541.5529014/1‑94 (MQ=60)
                                                              ACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAA                                >  SRR4302541.6471689/1‑94 (MQ=60)
                                                              ACCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAA                                >  SRR4302541.5523207/1‑94 (MQ=60)
                                                               CCAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAA                               >  SRR4302541.3929896/1‑94 (MQ=60)
                                                                CAGCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAA                              >  SRR4302541.6480006/1‑94 (MQ=60)
                                                                  GCGCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAAT                            <  SRR4302541.4516914/94‑1 (MQ=60)
                                                                    GCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCA                          >  SRR4302541.627511/1‑94 (MQ=60)
                                                                    GCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCA                          >  SRR4302541.6135173/1‑94 (MQ=60)
                                                                    GCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCA                          >  SRR4302541.5975934/1‑94 (MQ=60)
                                                                    GCCTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGCCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCA                          <  SRR4302541.1031527/94‑1 (MQ=60)
                                                                      CTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACC                        <  SRR4302541.6765800/94‑1 (MQ=60)
                                                                      CTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACC                        <  SRR4302541.3119984/94‑1 (MQ=60)
                                                                      CTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACC                        >  SRR4302541.3341009/1‑94 (MQ=60)
                                                                      CTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACC                        >  SRR4302541.4032838/1‑94 (MQ=60)
                                                                      CTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACC                        <  SRR4302541.1930642/94‑1 (MQ=60)
                                                                      CTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACC                        <  SRR4302541.1894469/94‑1 (MQ=60)
                                                                      CTTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACC                        >  SRR4302541.8673239/1‑94 (MQ=60)
                                                                       TTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCG                       >  SRR4302541.8520480/1‑94 (MQ=60)
                                                                       TTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCG                       >  SRR4302541.2055407/1‑94 (MQ=60)
                                                                       TTGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCG                       >  SRR4302541.45503/1‑94 (MQ=60)
                                                                        TGCCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGC                      <  SRR4302541.1818275/94‑1 (MQ=60)
                                                                        TGCCCCCTCCCGGCCACGCCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGC                      <  SRR4302541.5888718/94‑1 (MQ=60)
                                                                          CCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTT                    <  SRR4302541.8811409/94‑1 (MQ=60)
                                                                          CCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTT                    <  SRR4302541.138907/94‑1 (MQ=60)
                                                                          CCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTT                    <  SRR4302541.787794/94‑1 (MQ=60)
                                                                          CCTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTT                    >  SRR4302541.4849530/1‑94 (MQ=60)
                                                                           CTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTC                   >  SRR4302541.5931437/1‑94 (MQ=60)
                                                                           CTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTC                   >  SRR4302541.6756865/1‑94 (MQ=60)
                                                                           CTCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTC                   >  SRR4302541.5705739/1‑94 (MQ=60)
                                                                            TCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCC                  >  SRR4302541.8261010/1‑94 (MQ=60)
                                                                            TCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCC                  <  SRR4302541.8622150/94‑1 (MQ=60)
                                                                            CCCTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCC                  <  SRR4302541.1622786/94‑1 (MQ=60)
                                                                             CCTTCCGGCCACGGTCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCA                 <  SRR4302541.5121690/94‑1 (MQ=60)
                                                                              CTTCCGGCCCCGGCCAGTCGTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCGG                <  SRR4302541.4827347/94‑1 (MQ=60)
                                                                              CTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAG                >  SRR4302541.67246/1‑94 (MQ=60)
                                                                              CTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAG                <  SRR4302541.2599235/94‑1 (MQ=60)
                                                                              CTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAG                >  SRR4302541.2257337/1‑94 (MQ=60)
                                                                              CTTCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAG                >  SRR4302541.1286399/1‑94 (MQ=60)
                                                                                TCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGAC              <  SRR4302541.2249258/94‑1 (MQ=60)
                                                                                TCCGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGAC              <  SRR4302541.6649023/94‑1 (MQ=60)
                                                                                 CCGGCCACGCCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACG             <  SRR4302541.332279/94‑1 (MQ=60)
                                                                                  CGGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGG            >  SRR4302541.4800265/1‑94 (MQ=60)
                                                                                   GGCCCCGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGT           <  SRR4302541.8519898/94‑1 (MQ=60)
                                                                                   GGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGT           <  SRR4302541.8654914/94‑1 (MQ=60)
                                                                                   GGCCACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTACGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGT           >  SRR4302541.6084448/1‑94 (MQ=60)
                                                                                   GGACACGGCCCGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGT           <  SRR4302541.6639319/94‑1 (MQ=60)
                                                                                      CACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCAT        <  SRR4302541.3116881/94‑1 (MQ=60)
                                                                                      CACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCAT        <  SRR4302541.4258234/94‑1 (MQ=60)
                                                                                      CACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCAT        <  SRR4302541.7333799/94‑1 (MQ=60)
                                                                                      CACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCAT        <  SRR4302541.4038235/94‑1 (MQ=60)
                                                                                       ACGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATGTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATG       <  SRR4302541.2039310/94‑1 (MQ=60)
                                                                                        CGGCCGGTCTTTCGCCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGT      <  SRR4302541.514592/94‑1 (MQ=60)
                                                                                        CGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGT      <  SRR4302541.1519223/94‑1 (MQ=60)
                                                                                        CGGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGT      >  SRR4302541.7137768/1‑94 (MQ=60)
                                                                                         GGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTT     <  SRR4302541.6860352/94‑1 (MQ=60)
                                                                                         GGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTT     <  SRR4302541.1123339/94‑1 (MQ=60)
                                                                                         GGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTT     >  SRR4302541.716349/1‑94 (MQ=60)
                                                                                         GGCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTT     <  SRR4302541.8727300/94‑1 (MQ=60)
                                                                                          GCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCGAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTTG    <  SRR4302541.4574841/94‑1 (MQ=60)
                                                                                          GCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTTG    >  SRR4302541.8499356/1‑94 (MQ=60)
                                                                                          GCCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTTG    >  SRR4302541.1454348/1‑94 (MQ=60)
                                                                                           CCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTTGG   <  SRR4302541.1045940/94‑1 (MQ=60)
                                                                                           CCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTTGG   <  SRR4302541.908419/94‑1 (MQ=60)
                                                                                           CCGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTTGG   <  SRR4302541.6299252/94‑1 (MQ=60)
                                                                                            CGGTCTTTCACCATCCACACCGGGCTTGGGCATGTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTTGGT  <  SRR4302541.8566383/94‑1 (MQ=60)
                                                                                            |                                                                                             
CTTTGACCAGTTTTTCATTGAGCGCATTATGATACGGCTCTTCACTGGCGAGATTCACCGCCACCAGCGCCTTGCCTCCTTCCGGCCACGGCTGGTCTTTCACCATCCACACCGGGCTTGGGCATTTGCGTAACAGATGCCAGTCCGTTGGCGTAAAAATCACCGCTTCCAGACGGTCATGTTGGT  >  NC_000913/1396112‑1396297

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑