Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,605,226	G→A	T68T (ACG→ACA)	b1518 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,605,226	0	G	A	99.2%	886.1 / NA	264	T68T (ACG→ACA)	b1518	hypothetical protein
Reads supporting (aligned to +/- strand): ref base G (0/1); major base A (129/132); minor base C (1/1); total (130/134)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 276 total aligned reads displayed.

CGATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACGCCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGG  >  NC_000913/1605136‑1605315

 gATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACAccc                                                                                        <  2:4531827/93‑1 (MQ=255)

  aTGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACAcccc                                                                                       >  2:6560849/1‑93 (MQ=255)

  aTGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACAcccc                                                                                       >  2:124685/1‑93 (MQ=255)

      cTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTa                                                                                   <  2:5769219/93‑1 (MQ=255)

      cTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACCAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTa                                                                                   <  1:4329893/93‑1 (MQ=255)

       ttACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCGGTGGCGTTCCATAAAACCACACCCCACTAc                                                                                  >  1:8229592/1‑93 (MQ=255)

       ttACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTAc                                                                                  >  2:2731041/1‑93 (MQ=255)

       ttACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTAc                                                                                  >  1:6106194/1‑93 (MQ=255)

        tACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACa                                                                                 >  2:1789099/1‑93 (MQ=255)

        tACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACa                                                                                 <  2:6231700/93‑1 (MQ=255)

        tACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACa                                                                                 <  1:2679063/93‑1 (MQ=255)

        tACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACa                                                                                 >  2:5457087/1‑93 (MQ=255)

         aCAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACaa                                                                                <  2:4152788/93‑1 (MQ=255)

         aCAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACaa                                                                                >  2:5058895/1‑93 (MQ=255)

          cAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACaaa                                                                               <  2:1042856/93‑1 (MQ=255)

           aGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACaaaa                                                                              >  2:2993810/1‑93 (MQ=255)

           aGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGAGTTCCATAAAACCACACCCCACTACaaaa                                                                              >  1:6088834/1‑93 (MQ=255)

            ggACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAAc                                                                             <  1:3417426/93‑1 (MQ=255)

            ggACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAAc                                                                             >  1:1965868/1‑93 (MQ=255)

                ccGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCtgt                                                                         <  1:2524551/93‑1 (MQ=255)

                ccGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGCTCCATAAAACCACACCCCACTACAAAACCtgt                                                                         >  2:8520121/1‑93 (MQ=255)

                 cGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCtgtg                                                                        <  1:4816834/93‑1 (MQ=255)

                  ggAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCtgtgc                                                                       >  1:7842938/1‑92 (MQ=255)

                  ggAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTgtgt                                                                       <  1:7334368/93‑1 (MQ=255)

                  ggAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTgtgt                                                                       >  1:1309747/1‑93 (MQ=255)

                   gAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTc                                                                      >  2:7661139/1‑93 (MQ=255)

                   gAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTc                                                                      <  2:2396595/93‑1 (MQ=255)

                   gAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTc                                                                      <  1:1069518/93‑1 (MQ=255)

                   gAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTc                                                                      >  1:1770359/1‑93 (MQ=255)

                      gTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTcgcg                                                                   >  2:1567556/1‑93 (MQ=255)

                       tGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGa                                                                  <  1:4620958/93‑1 (MQ=255)

                          aTTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACCCCCCACTACAAAACCTGTGTCGCGAAAc                                                               <  1:7215068/93‑1 (MQ=255)

                           ttCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACt                                                              >  1:5814195/1‑93 (MQ=255)

                           ttCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACt                                                              >  1:1038841/1‑93 (MQ=255)

                            tCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTg                                                             <  2:7247260/93‑1 (MQ=255)

                              gcgcTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGa                                                           >  2:8122763/1‑93 (MQ=255)

                              gcgcTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGa                                                           <  1:7252952/93‑1 (MQ=255)

                               cgcTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGaa                                                          <  2:3231732/93‑1 (MQ=255)

                                gcTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAAt                                                         <  2:3061398/93‑1 (MQ=255)

                                  ttttATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCt                                                       <  1:2945084/93‑1 (MQ=255)

                                  ttttATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCt                                                       >  1:1867065/1‑93 (MQ=255)

                                   tttATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGCATCtt                                                      >  1:2466938/1‑93 (MQ=255)

                                     tataTCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTa                                                    <  2:3431983/93‑1 (MQ=255)

                                      atatCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTaa                                                   <  2:3100408/93‑1 (MQ=255)

                                       tatCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAAt                                                  >  1:7451792/1‑93 (MQ=255)

                                        atCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATg                                                 <  1:4972959/93‑1 (MQ=255)

                                        atCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATg                                                 <  2:6342499/93‑1 (MQ=255)

                                        atCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATg                                                 <  1:2345062/93‑1 (MQ=255)

                                         tCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGa                                                <  2:6832940/93‑1 (MQ=255)

                                           tACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGAcc                                              <  2:7879975/93‑1 (MQ=255)

                                           tACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGAcc                                              >  2:4723851/1‑93 (MQ=255)

                                           tACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGAcc                                              >  2:6135603/1‑93 (MQ=255)

                                            aCGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCg                                             <  1:3274614/93‑1 (MQ=255)

                                               aaGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGc                                          >  2:3967014/1‑93 (MQ=255)

                                                aGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGcc                                         <  1:1646917/93‑1 (MQ=255)

                                                 gCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCcg                                        >  1:757629/1‑93 (MQ=255)

                                                 gCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCcg                                        <  1:6935023/93‑1 (MQ=255)

                                                  ccTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCcgc                                       <  1:5298463/93‑1 (MQ=255)

                                                    tataAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAGCCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGt                                     <  1:3668459/93‑1 (MQ=255)

                                                    tataAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGt                                     <  1:5698700/93‑1 (MQ=255)

                                                     ataAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTa                                    <  1:6643674/93‑1 (MQ=255)

                                                        aaGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTaaaa                                 >  2:6926391/1‑93 (MQ=255)

                                                         aGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTaaaaa                                >  2:7521680/1‑93 (MQ=255)

                                                          gATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTaaaaaa                               <  2:2063881/93‑1 (MQ=255)

                                                              aaGACCCAGTGGCGTTCCATAAAACCCCACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTc                           <  1:2768131/93‑1 (MQ=255)

                                                               aGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCt                          <  2:2874675/93‑1 (MQ=255)

                                                               aGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCt                          <  1:6450406/93‑1 (MQ=255)

                                                                gACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTg                         <  1:6428177/93‑1 (MQ=255)

                                                                gACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTg                         >  2:3662818/1‑93 (MQ=255)

                                                                 aCGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGt                        <  1:4071382/93‑1 (MQ=255)

                                                                 aCGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGt                        <  2:5992482/93‑1 (MQ=255)

                                                                  cGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGtt                       <  1:4702596/93‑1 (MQ=255)

                                                                  cGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGtt                       <  2:7062194/93‑1 (MQ=255)

                                                                      gTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAAt                   >  1:5138123/1‑93 (MQ=255)

                                                                      gTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAAt                   >  1:7549404/1‑93 (MQ=255)

                                                                      gTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAAt                   >  2:2230406/1‑93 (MQ=255)

                                                                       tGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATg                  <  2:1625801/93‑1 (MQ=255)

                                                                       tGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATg                  >  2:7859774/1‑93 (MQ=255)

                                                                         gCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGt                <  2:2308393/93‑1 (MQ=255)

                                                                          ggTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGtt               <  2:3592652/92‑1 (MQ=255)

                                                                          cGTTACATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGtt               <  1:3922310/93‑1 (MQ=255)

                                                                           gTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGttt              <  1:3544925/93‑1 (MQ=255)

                                                                           gTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGttt              <  1:5508954/93‑1 (MQ=255)

                                                                            ttCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAACCGGCTGTTCACTGGTTTg             >  1:3032785/1‑93 (MQ=255)

                                                                             tCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGa            >  2:16746/1‑93 (MQ=255)

                                                                              ccATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGAt           <  1:3776040/93‑1 (MQ=255)

                                                                              ccATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGAt           >  2:5419412/1‑93 (MQ=255)

                                                                              ccATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGAt           >  2:3154016/1‑93 (MQ=255)

                                                                               cATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATg          >  2:8645548/1‑93 (MQ=255)

                                                                               cATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATg          >  1:3468907/1‑93 (MQ=255)

                                                                                cacaaaCCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGc         <  2:7820906/90‑1 (MQ=255)

                                                                                aTAAAACCACCCCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGc         >  2:4079120/1‑93 (MQ=255)

                                                                                aTAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGc         >  1:8820388/1‑93 (MQ=255)

                                                                                aTAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGc         <  1:2443972/93‑1 (MQ=255)

                                                                                aTAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGc         >  1:2112809/1‑93 (MQ=255)

                                                                                 tAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGcc        <  1:3856857/93‑1 (MQ=255)

                                                                                  aaaaCCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCg       >  2:4595637/1‑93 (MQ=255)

                                                                                  aaaaCCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCg       <  1:8334802/93‑1 (MQ=255)

                                                                                   aaaCCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGt      <  2:7486286/93‑1 (MQ=255)

                                                                                       cacaCCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAgg  <  2:4877842/93‑1 (MQ=255)

CGATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACGCCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGG  >  NC_000913/1605136‑1605315

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CTTCGATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACGCCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGGCGAA  >  NC_000913/1605133‑1605319

CTTCGATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACA                                                                                               <  SRR4302541.4339466/94‑1 (MQ=60)

 TTCGATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACAC                                                                                              <  SRR4302541.5263201/94‑1 (MQ=60)

   CGATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCC                                                                                            >  SRR4302541.8312243/1‑94 (MQ=60)

    GATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCC                                                                                           >  SRR4302541.3028012/1‑94 (MQ=60)

    GATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCC                                                                                           >  SRR4302541.3028011/1‑94 (MQ=60)

     ATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCA                                                                                          >  SRR4302541.6956394/1‑94 (MQ=60)

      TGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAAACACACCCCAC                                                                                         >  SRR4302541.2301514/1‑94 (MQ=60)

         CTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCGGTGGCGTTCCATAAAACCACACCCCACTAC                                                                                      >  SRR4302541.8319312/1‑94 (MQ=60)

         CTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTAC                                                                                      >  SRR4302541.6168543/1‑94 (MQ=60)

         CTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTAC                                                                                      >  SRR4302541.6151692/1‑94 (MQ=60)

         CTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTAC                                                                                      >  SRR4302541.4943597/1‑94 (MQ=60)

         CTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTAC                                                                                      >  SRR4302541.2058164/1‑94 (MQ=60)

         CTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACCAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTAC                                                                                      <  SRR4302541.4373124/94‑1 (MQ=60)

          TTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACA                                                                                     >  SRR4302541.1864218/1‑94 (MQ=60)

           TACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAA                                                                                    <  SRR4302541.2705675/94‑1 (MQ=60)

           TACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAA                                                                                    >  SRR4302541.6058744/1‑94 (MQ=60)

           TACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAA                                                                                    >  SRR4302541.7350952/1‑94 (MQ=60)

             CAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAA                                                                                  <  SRR4302541.5590593/94‑1 (MQ=60)

             CAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGAGTTCCATAAAACCACACCCCACTACAAAA                                                                                  >  SRR4302541.6150989/1‑94 (MQ=60)

              AGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAAC                                                                                 >  SRR4302541.1984829/1‑94 (MQ=60)

              AGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAAC                                                                                 >  SRR4302541.7892281/1‑94 (MQ=60)

               GGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACC                                                                                <  SRR4302541.6240146/94‑1 (MQ=60)

               GGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACC                                                                                <  SRR4302541.3451541/94‑1 (MQ=60)

                GACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCT                                                                               >  SRR4302541.3562916/1‑94 (MQ=60)

                 GCCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTG                                                                              <  SRR4302541.6677554/94‑1 (MQ=60)

                  CCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGT                                                                             <  SRR4302541.3673969/94‑1 (MQ=60)

                   CCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTG                                                                            <  SRR4302541.1778986/94‑1 (MQ=60)

                   CCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTG                                                                            <  SRR4302541.2549937/94‑1 (MQ=60)

                    CGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGT                                                                           <  SRR4302541.4865942/94‑1 (MQ=60)

                    CGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGT                                                                           >  SRR4302541.1322647/1‑94 (MQ=60)

                    CGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGC                                                                           >  SRR4302541.7928759/1‑94 (MQ=60)

                     GGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTC                                                                          >  SRR4302541.1787569/1‑94 (MQ=60)

                     GGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTC                                                                          <  SRR4302541.7412686/94‑1 (MQ=60)

                      GAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCG                                                                         <  SRR4302541.1079472/94‑1 (MQ=60)

                       AAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGC                                                                        <  SRR4302541.8457520/94‑1 (MQ=60)

                       AAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGC                                                                        >  SRR4302541.2510144/1‑94 (MQ=60)

                       AAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGC                                                                        >  SRR4302541.6989325/1‑94 (MQ=60)

                        AGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCG                                                                       <  SRR4302541.6498631/94‑1 (MQ=60)

                        AGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCG                                                                       >  SRR4302541.5715230/1‑94 (MQ=60)

                          TGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAA                                                                     <  SRR4302541.4667936/94‑1 (MQ=60)

                          TGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAA                                                                     <  SRR4302541.4667935/94‑1 (MQ=60)

                            AATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAAC                                                                   <  SRR4302541.7284663/94‑1 (MQ=60)

                             ATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACCCCCCACTACAAAACCTGTGTCGCGAAACT                                                                  <  SRR4302541.7292043/94‑1 (MQ=60)

                             ATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACT                                                                  >  SRR4302541.1048465/1‑94 (MQ=60)

                             ATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACT                                                                  >  SRR4302541.5873277/1‑94 (MQ=60)

                              TTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTG                                                                 >  SRR4302541.1713978/1‑94 (MQ=60)

                                 GCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAA                                                              <  SRR4302541.7330316/94‑1 (MQ=60)

                                  CGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAACCTGGAAT                                                             >  SRR4302541.7399262/1‑94 (MQ=60)

                                    CTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCT                                                           >  SRR4302541.1885051/1‑94 (MQ=60)

                                     TTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGCATCTT                                                          >  SRR4302541.2491601/1‑94 (MQ=60)

                                     TTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTT                                                          <  SRR4302541.2974696/94‑1 (MQ=60)

                                     TTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTT                                                          >  SRR4302541.2491600/1‑94 (MQ=60)

                                      TTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTT                                                         <  SRR4302541.1068288/94‑1 (MQ=60)

                                        TATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAT                                                       >  SRR4302541.3867916/1‑94 (MQ=60)

                                        TATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAA                                                       >  SRR4302541.3867915/1‑94 (MQ=60)

                                         ATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAAT                                                      <  SRR4302541.60716/94‑1 (MQ=60)

                                         ATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAAT                                                      >  SRR4302541.7531378/1‑94 (MQ=60)

                                          TATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAATCCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATG                                                     <  SRR4302541.6317727/94‑1 (MQ=60)

                                          TATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATG                                                     <  SRR4302541.2267151/94‑1 (MQ=60)

                                           ATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGA                                                    <  SRR4302541.5023917/94‑1 (MQ=60)

                                           ATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGA                                                    >  SRR4302541.4421219/1‑94 (MQ=60)

                                           ATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGA                                                    <  SRR4302541.2367847/94‑1 (MQ=60)

                                            TCTACGAAGCCTATAACGATGAAGCCGCAGTGGCGTTCCATAAAACCACACCCCCCTACACAACCTTTGTCGCGAAAGTGGAATCTTTAATGCC                                                   >  SRR4302541.5351793/1‑94 (MQ=60)

                                            TCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTTTGTCGCGAAACTGGAATCTTTAATGAC                                                   >  SRR4302541.5351792/1‑94 (MQ=60)

                                            TCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGAC                                                   <  SRR4302541.3945494/94‑1 (MQ=60)

                                             CTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACC                                                  >  SRR4302541.3131024/1‑94 (MQ=60)

                                               ACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGG                                                >  SRR4302541.1972720/1‑94 (MQ=60)

                                               ACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGG                                                <  SRR4302541.3307646/94‑1 (MQ=60)

                                                CGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGG                                               <  SRR4302541.1332905/94‑1 (MQ=60)

                                                CGAAGCCTATAAAGATGAAGACGCAGGGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGG                                               <  SRR4302541.4891731/94‑1 (MQ=60)

                                                 GAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGC                                              >  SRR4302541.2443267/1‑94 (MQ=60)

                                                  AAGCCTATAAAGATGAAGACGCAGTGTCGTTCCATAAAACCACACCCCACTACAAAACCCGTGTCGCGAAGCGGAAATCTTTTATGACCGCGCC                                             >  SRR4302541.8034178/1‑94 (MQ=60)

                                                  AAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCC                                             >  SRR4302541.2789645/1‑94 (MQ=60)

                                                   AGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCG                                            >  SRR4302541.764761/1‑94 (MQ=60)

                                                   AGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCG                                            <  SRR4302541.1663192/94‑1 (MQ=60)

                                                   AGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATATTTAATGACCGGGCCG                                            >  SRR4302541.6156226/1‑94 (MQ=60)

                                                    GCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGC                                           <  SRR4302541.7009013/94‑1 (MQ=60)

                                                     CCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCG                                          <  SRR4302541.5352997/94‑1 (MQ=60)

                                                      CTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGT                                         >  SRR4302541.1157941/1‑94 (MQ=60)

                                                      CTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGT                                         <  SRR4302541.3487523/94‑1 (MQ=60)

                                                      CTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGT                                         >  SRR4302541.4160283/1‑94 (MQ=60)

                                                      CTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGCCCGCGC                                         >  SRR4302541.5432273/1‑94 (MQ=60)

                                                       TATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAGCCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTA                                        <  SRR4302541.3705663/94‑1 (MQ=60)

                                                       TATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTA                                        >  SRR4302541.8401770/1‑94 (MQ=60)

                                                       TATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTA                                        <  SRR4302541.5756811/94‑1 (MQ=60)

                                                        ATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAA                                       <  SRR4302541.6711817/94‑1 (MQ=60)

                                                        ATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAA                                       >  SRR4302541.7731197/1‑94 (MQ=60)

                                                             GATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAAC                                  >  SRR4302541.729521/1‑94 (MQ=60)

                                                              ATGAAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACG                                 >  SRR4302541.4842756/1‑94 (MQ=60)

                                                                 AAGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCT                              <  SRR4302541.7137254/94‑1 (MQ=60)

                                                                 AAGACCCAGTGGCGTTCCATAAAACCCCACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCT                              <  SRR4302541.2795997/94‑1 (MQ=60)

                                                                  AGACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTG                             <  SRR4302541.6516152/94‑1 (MQ=60)

                                                                   GACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGT                            <  SRR4302541.4259607/94‑1 (MQ=60)

                                                                   GACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGT                            <  SRR4302541.6493710/94‑1 (MQ=60)

                                                                    ACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTT                           <  SRR4302541.4111563/94‑1 (MQ=60)

                                                                    ACGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTT                           <  SRR4302541.2627336/94‑1 (MQ=60)

                                                                     CGCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTC                          <  SRR4302541.4750537/94‑1 (MQ=60)

                                                                      GCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCA                         >  SRR4302541.5355907/1‑94 (MQ=60)

                                                                      GCAGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCA                         <  SRR4302541.4019832/94‑1 (MQ=60)

                                                                        TGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAAT                       >  SRR4302541.7630083/1‑94 (MQ=60)

                                                                        AGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAAT                       >  SRR4302541.7630082/1‑94 (MQ=60)

                                                                        AGTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAAT                       >  SRR4302541.5190951/1‑94 (MQ=60)

                                                                         GTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATG                      <  SRR4302541.6562867/94‑1 (MQ=60)

                                                                         GTGGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATG                      >  SRR4302541.4781438/1‑94 (MQ=60)

                                                                           GGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGT                    <  SRR4302541.4092828/94‑1 (MQ=60)

                                                                           GGCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGT                    >  SRR4302541.2615207/1‑94 (MQ=60)

                                                                            GCGTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTT                   <  SRR4302541.2544117/94‑1 (MQ=60)

                                                                             CGTTACATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTT                  <  SRR4302541.3961428/94‑1 (MQ=60)

                                                                              GTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAACCGGCTGTTCACTGGTTTG                 >  SRR4302541.3063408/1‑94 (MQ=60)

                                                                              GTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTG                 <  SRR4302541.123573/94‑1 (MQ=60)

                                                                              GTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTG                 <  SRR4302541.3580709/94‑1 (MQ=60)

                                                                              GTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTG                 <  SRR4302541.3580711/94‑1 (MQ=60)

                                                                              GTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTG                 >  SRR4302541.3350499/1‑94 (MQ=60)

                                                                              GTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTG                 >  SRR4302541.7435121/1‑94 (MQ=60)

                                                                              GTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTG                 <  SRR4302541.5565370/94‑1 (MQ=60)

                                                                              GTTCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTG                 <  SRR4302541.8468602/94‑1 (MQ=60)

                                                                                TCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGAT               >  SRR4302541.7627415/1‑94 (MQ=60)

                                                                                TCCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGAT               <  SRR4302541.3731685/94‑1 (MQ=60)

                                                                                 CCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATG              >  SRR4302541.3503599/1‑94 (MQ=60)

                                                                                 CCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATG              <  SRR4302541.7446344/94‑1 (MQ=60)

                                                                                 CCATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATG              <  SRR4302541.3813966/94‑1 (MQ=60)

                                                                                  CATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGC             >  SRR4302541.8914528/1‑94 (MQ=60)

                                                                                  CATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGC             >  SRR4302541.2133274/1‑94 (MQ=60)

                                                                                   caAAAACCACACCCCACTACAAAGCCGGTGGCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCC            <  SRR4302541.2468221/92‑1 (MQ=60)

                                                                                   ATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCC            <  SRR4302541.2468220/94‑1 (MQ=60)

                                                                                   ATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCC            <  SRR4302541.7577018/94‑1 (MQ=60)

                                                                                   ATAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCC            >  SRR4302541.3455002/1‑94 (MQ=60)

                                                                                    TAAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCG           <  SRR4302541.3895659/94‑1 (MQ=60)

                                                                                     AAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGT          <  SRR4302541.5080424/94‑1 (MQ=60)

                                                                                     AAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGT          <  SRR4302541.8425312/94‑1 (MQ=60)

                                                                                     AAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGT          <  SRR4302541.8425140/94‑1 (MQ=60)

                                                                                     AAAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGT          >  SRR4302541.4702694/1‑94 (MQ=60)

                                                                                      AAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTG         <  SRR4302541.2836012/94‑1 (MQ=60)

                                                                                      AAACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTG         <  SRR4302541.148029/94‑1 (MQ=60)

                                                                                       AACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGA        >  SRR4302541.3251908/1‑94 (MQ=60)

                                                                                        ACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAG       <  SRR4302541.2821873/94‑1 (MQ=60)

                                                                                        ACCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTGAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAG       <  SRR4302541.3944382/94‑1 (MQ=60)

                                                                                         CCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGG      <  SRR4302541.195074/94‑1 (MQ=60)

                                                                                         CCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGG      >  SRR4302541.353598/1‑94 (MQ=60)

                                                                                         CCACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGG      <  SRR4302541.2127012/94‑1 (MQ=60)

                                                                                         CCACACCCCACTACAAAACATGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGCTTGATGCCGTGAGG      <  SRR4302541.5864337/94‑1 (MQ=60)

                                                                                          CACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGGC     >  SRR4302541.143873/1‑94 (MQ=60)

                                                                                           ACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGGCG    >  SRR4302541.1224743/1‑94 (MQ=60)

                                                                                           ACACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGGCG    <  SRR4302541.4454742/94‑1 (MQ=60)

                                                                                            CACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGGCGA   <  SRR4302541.8352435/94‑1 (MQ=60)

                                                                                             ACCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCACTGGTTTGATGCCGTGAGGCGAA  >  SRR4302541.8700930/1‑94 (MQ=60)

CTTCGATGTCTTACAGGACCCGGAAGTGAATTCGCGCTTTTATATCTACGAAGCCTATAAAGATGAAGACGCAGTGGCGTTCCATAAAACCACGCCCCACTACAAAACCTGTGTCGCGAAACTGGAATCTTTAATGACCGGGCCGCGTAAAAAACGTCTGTTCAATGGTTTGATGCCGTGAGGCGAA  >  NC_000913/1605133‑1605319

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`