Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGTTGCGTC  >  NC_000913/877960‑878142
                                                                                          |                                                                                            
GCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACT                                                                                           <  SRR4302541.5548713/94‑1 (MQ=60)
 CGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTC                                                                                          >  SRR4302541.2290362/1‑94 (MQ=60)
  GTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGA                                                                                         >  SRR4302541.657853/1‑94 (MQ=60)
    TATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAA                                                                                       >  SRR4302541.3106801/1‑94 (MQ=60)
     ATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAG                                                                                      >  SRR4302541.5247538/1‑94 (MQ=60)
     ATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAG                                                                                      <  SRR4302541.6841540/94‑1 (MQ=60)
      TGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGA                                                                                     >  SRR4302541.6401730/1‑94 (MQ=60)
       GCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGAC                                                                                    >  SRR4302541.3464926/1‑94 (MQ=60)
       GCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGAC                                                                                    <  SRR4302541.6124116/94‑1 (MQ=60)
       GCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTGCTTCCGCTCTCTGGGCGGCTCGTGCAACGGTAAATGTCGGAGTATTGCAAGAC                                                                                    >  SRR4302541.3464925/1‑94 (MQ=60)
        CATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAGCGGTAAATGTCGAAGCACTGCAAGACA                                                                                   <  SRR4302541.6208084/94‑1 (MQ=60)
        CATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACA                                                                                   <  SRR4302541.3802060/94‑1 (MQ=60)
        CATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACA                                                                                   >  SRR4302541.4278136/1‑94 (MQ=60)
        CATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACA                                                                                   >  SRR4302541.2874295/1‑94 (MQ=60)
        CATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACA                                                                                   >  SRR4302541.1142527/1‑94 (MQ=60)
           CGACAATCCTTTTTCCTTGTTCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAAC                                                                                <  SRR4302541.7608303/94‑1 (MQ=60)
           CGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAAC                                                                                <  SRR4302541.2652730/94‑1 (MQ=60)
           CGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAAC                                                                                >  SRR4302541.7862440/1‑94 (MQ=60)
           CGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAAC                                                                                >  SRR4302541.7415695/1‑94 (MQ=60)
            GGCAATCCTTTTTCCGTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGTCGGGTCTTGCAAAGGTAAATGTCGAAGCACTGCAAGACAAACT                                                                               <  SRR4302541.2875178/94‑1 (MQ=60)
            GACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACT                                                                               <  SRR4302541.2875177/94‑1 (MQ=60)
              CAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCG                                                                             <  SRR4302541.4155380/94‑1 (MQ=60)
              CAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCG                                                                             <  SRR4302541.8064632/94‑1 (MQ=60)
              CAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCG                                                                             >  SRR4302541.7279170/1‑94 (MQ=60)
              CAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCG                                                                             >  SRR4302541.6914962/1‑94 (MQ=60)
               AATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGA                                                                            >  SRR4302541.1967607/1‑94 (MQ=60)
                ATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGAC                                                                           >  SRR4302541.2610129/1‑94 (MQ=60)
                  CCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCA                                                                         >  SRR4302541.3445635/1‑94 (MQ=60)
                   CTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCAT                                                                        >  SRR4302541.5033575/1‑94 (MQ=60)
                   CTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCAT                                                                        <  SRR4302541.1027490/94‑1 (MQ=60)
                   CTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCAT                                                                        >  SRR4302541.1363381/1‑94 (MQ=60)
                    TTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATC                                                                       >  SRR4302541.1007947/1‑94 (MQ=60)
                     TTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCC                                                                      >  SRR4302541.5967703/1‑94 (MQ=60)
                      TTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCC                                                                     >  SRR4302541.1139557/1‑94 (MQ=60)
                       TTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCT                                                                    <  SRR4302541.7984624/94‑1 (MQ=60)
                       TTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCT                                                                    >  SRR4302541.6418361/1‑94 (MQ=60)
                       TTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCT                                                                    <  SRR4302541.6526974/94‑1 (MQ=60)
                        TCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTG                                                                   <  SRR4302541.2701078/94‑1 (MQ=60)
                         TCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGCCGAAGCACTGCAAGACAAACTCGACCATCCCTGG                                                                  <  SRR4302541.8743288/94‑1 (MQ=60)
                         CCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGATGCACTGCAAGACAAACTCGACCATCCCTGG                                                                  <  SRR4302541.3666032/94‑1 (MQ=60)
                         CCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGG                                                                  <  SRR4302541.5679270/94‑1 (MQ=60)
                         CCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGG                                                                  >  SRR4302541.4488229/1‑94 (MQ=60)
                         CCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGG                                                                  <  SRR4302541.3606359/94‑1 (MQ=60)
                          CTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAACACAAACTCGACCATCCCTGGG                                                                 >  SRR4302541.6124489/1‑94 (MQ=60)
                             GTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCAC                                                              >  SRR4302541.1522904/1‑94 (MQ=60)
                              TGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACT                                                             <  SRR4302541.1752715/94‑1 (MQ=60)
                              TGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACT                                                             <  SRR4302541.681311/94‑1 (MQ=60)
                              TGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACT                                                             >  SRR4302541.3779759/1‑94 (MQ=60)
                              TGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGCGCACT                                                             >  SRR4302541.3779758/1‑94 (MQ=60)
                                CCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGG                                                           >  SRR4302541.8292242/1‑94 (MQ=60)
                                CCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGG                                                           >  SRR4302541.1366892/1‑94 (MQ=60)
                                CCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGC                                                           >  SRR4302541.2666588/1‑94 (MQ=60)
                                 CCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGC                                                          >  SRR4302541.546503/1‑94 (MQ=60)
                                 CCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGC                                                          >  SRR4302541.3656753/1‑94 (MQ=60)
                                  CCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCC                                                         <  SRR4302541.7045880/94‑1 (MQ=60)
                                  CCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCC                                                         >  SRR4302541.6850693/1‑94 (MQ=60)
                                   CTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCT                                                        >  SRR4302541.4221892/1‑94 (MQ=60)
                                   CTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCT                                                        >  SRR4302541.5036259/1‑94 (MQ=60)
                                    TTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTT                                                       <  SRR4302541.8893366/94‑1 (MQ=60)
                                    TTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTT                                                       <  SRR4302541.569997/94‑1 (MQ=60)
                                      ATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTT                                                     >  SRR4302541.1002213/1‑94 (MQ=60)
                                      ATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCGCTGGCCTTTT                                                     >  SRR4302541.1587362/1‑94 (MQ=60)
                                      ATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTT                                                     >  SRR4302541.6673077/1‑94 (MQ=60)
                                      ATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTT                                                     >  SRR4302541.5424558/1‑94 (MQ=60)
                                      ATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTT                                                     <  SRR4302541.4001212/94‑1 (MQ=60)
                                      ATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTT                                                     >  SRR4302541.8474370/1‑94 (MQ=60)
                                      ATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTT                                                     >  SRR4302541.3266242/1‑94 (MQ=60)
                                       TTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTT                                                    <  SRR4302541.1164325/94‑1 (MQ=60)
                                       TTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTT                                                    <  SRR4302541.8378231/94‑1 (MQ=60)
                                       TTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTT                                                    >  SRR4302541.7402774/1‑94 (MQ=60)
                                           TCTTGCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCC                                                <  SRR4302541.4750975/94‑1 (MQ=60)
                                            CTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCG                                               >  SRR4302541.4746946/1‑94 (MQ=60)
                                            CTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCG                                               >  SRR4302541.1114203/1‑94 (MQ=60)
                                            CTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCG                                               >  SRR4302541.8500606/1‑94 (MQ=60)
                                            CTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCG                                               >  SRR4302541.7334609/1‑94 (MQ=60)
                                             TTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGA                                              >  SRR4302541.4707778/1‑94 (MQ=60)
                                              TTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGAT                                             <  SRR4302541.1994789/94‑1 (MQ=60)
                                                CTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAA                                           <  SRR4302541.2795850/94‑1 (MQ=60)
                                                CTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAA                                           <  SRR4302541.573945/94‑1 (MQ=60)
                                                CTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAA                                           >  SRR4302541.7538186/1‑94 (MQ=60)
                                                 TTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAAT                                          <  SRR4302541.915671/94‑1 (MQ=60)
                                                 TTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAAT                                          <  SRR4302541.7213163/94‑1 (MQ=60)
                                                   CCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCA                                        >  SRR4302541.1645141/1‑94 (MQ=60)
                                                   CCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCA                                        >  SRR4302541.7468986/1‑94 (MQ=60)
                                                    CGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCAC                                       <  SRR4302541.1446793/94‑1 (MQ=60)
                                                    CGCTCTCTGGGCGGCTCCTGCAACGGGAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCAC                                       >  SRR4302541.3181690/1‑94 (MQ=60)
                                                     GCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACG                                      <  SRR4302541.2051361/94‑1 (MQ=60)
                                                     GCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACG                                      <  SRR4302541.7517831/94‑1 (MQ=60)
                                                     GCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCCGGGCACTGGCCTTTTTACCCGATAATCACG                                      >  SRR4302541.5348910/1‑94 (MQ=60)
                                                      CTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGG                                     <  SRR4302541.6079458/94‑1 (MQ=60)
                                                      CTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCAGATAATCACGG                                     <  SRR4302541.5719591/94‑1 (MQ=60)
                                                        CTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTA                                   >  SRR4302541.1672046/1‑94 (MQ=60)
                                                        CTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTA                                   >  SRR4302541.8819737/1‑94 (MQ=60)
                                                         TCTGGGCGGCTCCTGCAACGGTAAATGTCGACGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACCGTAT                                  >  SRR4302541.7521752/1‑94 (MQ=60)
                                                         TCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTAT                                  >  SRR4302541.6543621/1‑94 (MQ=60)
                                                         TCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTAT                                  <  SRR4302541.6966046/94‑1 (MQ=60)
                                                               CGGCTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAAT                            <  SRR4302541.2250306/94‑1 (MQ=60)
                                                                 GCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCA                          >  SRR4302541.189575/1‑94 (MQ=60)
                                                                  CTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCAC                         >  SRR4302541.1169351/1‑94 (MQ=60)
                                                                  CTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCAC                         <  SRR4302541.1295141/94‑1 (MQ=60)
                                                                  CTCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCAC                         >  SRR4302541.8035762/1‑94 (MQ=60)
                                                                   TCCTGCAACGGTAAATGTCGAAGCACTGTAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACT                        <  SRR4302541.4332331/94‑1 (MQ=60)
                                                                   TCCTGCAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACT                        <  SRR4302541.6150479/94‑1 (MQ=60)
                                                                      TGCAACGGTAGATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTG                     <  SRR4302541.6993668/94‑1 (MQ=60)
                                                                      TGCAACGGTAAATGTCGAAGCACTGCAAGACAACCTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTG                     <  SRR4302541.7886115/94‑1 (MQ=60)
                                                                        CAACGGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCG                   >  SRR4302541.3777744/1‑94 (MQ=60)
                                                                         AACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGC                  <  SRR4302541.3461134/94‑1 (MQ=60)
                                                                         AACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATAACTCTcacg                  >  SRR4302541.1783373/1‑90 (MQ=60)
                                                                           CGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGG                >  SRR4302541.6612809/1‑94 (MQ=60)
                                                                            GGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCTGC               <  SRR4302541.2020821/94‑1 (MQ=60)
                                                                            GGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGC               <  SRR4302541.8743482/94‑1 (MQ=60)
                                                                            GGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGC               >  SRR4302541.7536963/1‑94 (MQ=60)
                                                                            GGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGC               <  SRR4302541.1241666/94‑1 (MQ=60)
                                                                            GGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGC               <  SRR4302541.1241668/94‑1 (MQ=60)
                                                                            GGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGC               >  SRR4302541.6178765/1‑94 (MQ=60)
                                                                            GGTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGC               >  SRR4302541.8277134/1‑94 (MQ=60)
                                                                             GTAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCG              >  SRR4302541.6414440/1‑94 (MQ=60)
                                                                              TAAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGG             >  SRR4302541.5172642/1‑94 (MQ=60)
                                                                               AAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGC            <  SRR4302541.2992500/94‑1 (MQ=60)
                                                                               AAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCGCTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGC            >  SRR4302541.6316273/1‑94 (MQ=60)
                                                                               AAATGTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGC            >  SRR4302541.6439291/1‑94 (MQ=60)
                                                                                   GTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGacagt        >  SRR4302541.2548771/1‑89 (MQ=60)
                                                                                   GTCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGT        >  SRR4302541.2548770/1‑94 (MQ=60)
                                                                                    TCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGTT       <  SRR4302541.6891618/94‑1 (MQ=60)
                                                                                    TCGAAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGTT       <  SRR4302541.4390451/94‑1 (MQ=60)
                                                                                      GAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGTTGC     >  SRR4302541.8796852/1‑94 (MQ=60)
                                                                                       AAGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGTTGCG    >  SRR4302541.3496680/1‑94 (MQ=60)
                                                                                        AGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGTTGCGT   >  SRR4302541.1863371/1‑94 (MQ=60)
                                                                                        AGCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGTTGCGT   >  SRR4302541.300152/1‑94 (MQ=60)
                                                                                         GCACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGTTGCGTC  >  SRR4302541.2911917/1‑94 (MQ=60)
                                                                                          |                                                                                            
GCGTTATGCATCGACAATCCTTTTTCCTTGTGCCCCTTATTTGTCTTTCTTCCGCTCTCTGGGCGGCTCCTGCAACGGTAAATGTCGAAGTACTGCAAGACAAACTCGACCATCCCTGGGCACTGGCCTTTTTACCCGATAATCACGGTATGTTAATCACTCTGCGCGGCGGCGAGTTGCGTC  >  NC_000913/877960‑878142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑