Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTTGATCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCAGGC  >  NC_000913/972257‑972443
                                                                                             |                                                                                             
TTTGATCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGT                                                                                               <  SRR4302541.390336/94‑1 (MQ=60)
 TTGATCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCT                                                                                              >  SRR4302541.4116521/1‑94 (MQ=60)
   GATCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCC                                                                                            >  SRR4302541.3775730/1‑94 (MQ=60)
   GATCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCC                                                                                            >  SRR4302541.3607077/1‑94 (MQ=60)
   GATCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGATCGGTGCCCACTGCGGGCTCC                                                                                            >  SRR4302541.921636/1‑94 (MQ=60)
    ATCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCA                                                                                           >  SRR4302541.3074797/1‑94 (MQ=60)
    ATCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCA                                                                                           >  SRR4302541.925049/1‑94 (MQ=60)
     TCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAG                                                                                          >  SRR4302541.3612697/1‑94 (MQ=60)
     TCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAG                                                                                          <  SRR4302541.5406017/94‑1 (MQ=60)
     TCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAG                                                                                          >  SRR4302541.43984/1‑94 (MQ=60)
      CCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCCCTGCGGGTTCCAGG                                                                                         >  SRR4302541.2873490/1‑94 (MQ=60)
      CCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGG                                                                                         >  SRR4302541.7238034/1‑94 (MQ=60)
       CCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGT                                                                                        >  SRR4302541.2361545/1‑94 (MQ=60)
       CCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGT                                                                                        >  SRR4302541.3137447/1‑94 (MQ=60)
        CGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTA                                                                                       >  SRR4302541.1661288/1‑94 (MQ=60)
        CGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTA                                                                                       >  SRR4302541.4789708/1‑94 (MQ=60)
          GATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATA                                                                                     >  SRR4302541.5450354/1‑94 (MQ=60)
           ATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAA                                                                                    <  SRR4302541.4171909/94‑1 (MQ=60)
           ATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAA                                                                                    >  SRR4302541.8369498/1‑94 (MQ=60)
            TTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAAC                                                                                   >  SRR4302541.4300190/1‑94 (MQ=60)
             TTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACC                                                                                  <  SRR4302541.8104156/94‑1 (MQ=60)
               TCGCGCCATAAGCGAATTCCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCAC                                                                                <  SRR4302541.388037/94‑1 (MQ=60)
               TCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCAC                                                                                <  SRR4302541.5487749/94‑1 (MQ=60)
                CGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACC                                                                               >  SRR4302541.7202412/1‑94 (MQ=60)
                  CGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTC                                                                             <  SRR4302541.4898751/94‑1 (MQ=60)
                  CGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTC                                                                             >  SRR4302541.3798193/1‑94 (MQ=60)
                  CGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTC                                                                             <  SRR4302541.7462489/94‑1 (MQ=60)
                   GCCATAAGCTAATACCTTCATGCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACGGCGGGCTCCAGGTATAACCACCTCC                                                                            <  SRR4302541.5923915/94‑1 (MQ=60)
                   GCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCC                                                                            <  SRR4302541.5923917/94‑1 (MQ=60)
                   GCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCC                                                                            <  SRR4302541.5923916/94‑1 (MQ=60)
                    CCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCG                                                                           >  SRR4302541.4308726/1‑94 (MQ=60)
                    CCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCG                                                                           <  SRR4302541.7470161/94‑1 (MQ=60)
                    CCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCG                                                                           >  SRR4302541.4809495/1‑94 (MQ=60)
                     CATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGA                                                                          >  SRR4302541.2542897/1‑94 (MQ=60)
                     CATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGA                                                                          >  SRR4302541.4541263/1‑94 (MQ=60)
                      ATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAG                                                                         <  SRR4302541.3216277/94‑1 (MQ=60)
                           CGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCA                                                                    >  SRR4302541.6747399/1‑94 (MQ=60)
                              ATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGA                                                                 <  SRR4302541.1113760/94‑1 (MQ=60)
                               TACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTG‑CCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATA                                                               <  SRR4302541.5679531/94‑1 (MQ=60)
                                 CCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATAT                                                              <  SRR4302541.8078282/94‑1 (MQ=60)
                                 CCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATAT                                                              <  SRR4302541.6429378/94‑1 (MQ=60)
                                   TTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTGGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAG                                                            <  SRR4302541.2537719/94‑1 (MQ=60)
                                   TTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAG                                                            <  SRR4302541.8694635/94‑1 (MQ=60)
                                   TTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAG                                                            <  SRR4302541.753895/94‑1 (MQ=60)
                                    TCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGT                                                           <  SRR4302541.5526518/94‑1 (MQ=60)
                                    TCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGT                                                           <  SRR4302541.7813508/94‑1 (MQ=60)
                                    TCATTCAGGCGTGGCAGACTGTTAGTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGT                                                           <  SRR4302541.4159247/94‑1 (MQ=60)
                                    TCATTCAGGCGTGGCAAGCTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGT                                                           <  SRR4302541.7916367/94‑1 (MQ=60)
                                     CATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTC                                                          >  SRR4302541.8735228/1‑94 (MQ=60)
                                     CATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTC                                                          <  SRR4302541.823362/94‑1 (MQ=60)
                                     CATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTC                                                          <  SRR4302541.5532736/94‑1 (MQ=60)
                                     CATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTC                                                          >  SRR4302541.5649179/1‑94 (MQ=60)
                                      ATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCC                                                         >  SRR4302541.7473530/1‑94 (MQ=60)
                                      ATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCC                                                         >  SRR4302541.8327625/1‑94 (MQ=60)
                                      ATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCC                                                         >  SRR4302541.8263799/1‑94 (MQ=60)
                                      ATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCC                                                         <  SRR4302541.6374636/94‑1 (MQ=60)
                                        TCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCAC                                                       >  SRR4302541.5705921/1‑94 (MQ=60)
                                          AGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTT                                                     >  SRR4302541.6956856/1‑94 (MQ=60)
                                          AGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTT                                                     >  SRR4302541.3381816/1‑94 (MQ=60)
                                          AGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTT                                                     <  SRR4302541.5007500/94‑1 (MQ=60)
                                           GGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTT                                                    <  SRR4302541.7851921/94‑1 (MQ=60)
                                           GGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTT                                                    <  SRR4302541.2767215/94‑1 (MQ=60)
                                             CGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTT                                                  >  SRR4302541.7406235/1‑94 (MQ=60)
                                              GTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTG                                                 <  SRR4302541.7738261/94‑1 (MQ=60)
                                               TGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGC                                                <  SRR4302541.4404317/94‑1 (MQ=60)
                                               TGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGC                                                >  SRR4302541.8078832/1‑94 (MQ=60)
                                               TGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGC                                                <  SRR4302541.5870673/94‑1 (MQ=60)
                                                  CAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAA                                             >  SRR4302541.1806124/1‑94 (MQ=60)
                                                  CAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAA                                             <  SRR4302541.2545060/94‑1 (MQ=60)
                                                   AGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAAT                                            <  SRR4302541.611765/94‑1 (MQ=60)
                                                     ACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTA                                          >  SRR4302541.6312364/1‑94 (MQ=60)
                                                     ACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTA                                          >  SRR4302541.5252657/1‑94 (MQ=60)
                                                     ACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTA                                          <  SRR4302541.4116771/94‑1 (MQ=60)
                                                      CTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTAT                                         <  SRR4302541.1939057/94‑1 (MQ=60)
                                                      CTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTAT                                         >  SRR4302541.6908139/1‑94 (MQ=60)
                                                      CTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTAT                                         >  SRR4302541.5593789/1‑94 (MQ=60)
                                                      CTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTAT                                         >  SRR4302541.2408855/1‑94 (MQ=60)
                                                       TGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATT                                        >  SRR4302541.6595088/1‑94 (MQ=60)
                                                       TGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATT                                        >  SRR4302541.1098295/1‑94 (MQ=60)
                                                         TTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCC                                      <  SRR4302541.8562202/94‑1 (MQ=60)
                                                          TATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCA                                     >  SRR4302541.8517712/1‑94 (MQ=60)
                                                          TATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCA                                     <  SRR4302541.5436719/94‑1 (MQ=60)
                                                          TATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCA                                     <  SRR4302541.3431846/94‑1 (MQ=60)
                                                           ATTGATTAAATTAGAGCTCGGCGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCAT                                    <  SRR4302541.5231142/94‑1 (MQ=60)
                                                            TTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATG                                   <  SRR4302541.5078934/94‑1 (MQ=60)
                                                            TTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATG                                   <  SRR4302541.4573158/94‑1 (MQ=60)
                                                            TTGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATG                                   >  SRR4302541.2616061/1‑94 (MQ=60)
                                                             TGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATATTCCACTTTTTGCGCATTATTCCATGT                                  >  SRR4302541.6589132/1‑94 (MQ=60)
                                                             TGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGT                                  >  SRR4302541.4807480/1‑94 (MQ=60)
                                                             TGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGT                                  >  SRR4302541.6589131/1‑94 (MQ=60)
                                                             TGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGT                                  >  SRR4302541.5229567/1‑94 (MQ=60)
                                                             TGATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGT                                  >  SRR4302541.2085019/1‑94 (MQ=60)
                                                               ATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCG                                >  SRR4302541.5206072/1‑94 (MQ=60)
                                                               ATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCG                                >  SRR4302541.608234/1‑94 (MQ=60)
                                                               ATTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCG                                >  SRR4302541.1175872/1‑94 (MQ=60)
                                                                TTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGG                               <  SRR4302541.5282295/94‑1 (MQ=60)
                                                                TTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAAATATTCCATGTCGG                               <  SRR4302541.5282296/94‑1 (MQ=60)
                                                                TTAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGG                               >  SRR4302541.4444004/1‑94 (MQ=60)
                                                                 TAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGA                              >  SRR4302541.7861672/1‑94 (MQ=60)
                                                                 TAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGA                              >  SRR4302541.3122814/1‑94 (MQ=60)
                                                                 TAAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGA                              <  SRR4302541.3577448/94‑1 (MQ=60)
                                                                  AAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGAT                             >  SRR4302541.6593717/1‑94 (MQ=60)
                                                                  AAATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGAT                             >  SRR4302541.2950296/1‑94 (MQ=60)
                                                                   AATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATA                            <  SRR4302541.8214016/94‑1 (MQ=60)
                                                                   AATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCcgctc                            >  SRR4302541.4407007/1‑89 (MQ=60)
                                                                    ATTAGAGCTCGGTGCCCACTGCGGGCTGCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAG                           <  SRR4302541.6489751/94‑1 (MQ=60)
                                                                    ATTAGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAG                           >  SRR4302541.2260641/1‑94 (MQ=60)
                                                                       AGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTG                        >  SRR4302541.7693405/1‑94 (MQ=60)
                                                                       AGAGCTCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTG                        >  SRR4302541.8522723/1‑94 (MQ=60)
                                                                           CTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTT                    <  SRR4302541.4112619/94‑1 (MQ=60)
                                                                           CTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTT                    <  SRR4302541.2021892/94‑1 (MQ=60)
                                                                            TCGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTC                   >  SRR4302541.4852678/1‑94 (MQ=60)
                                                                            CCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTC                   <  SRR4302541.6784566/94‑1 (MQ=60)
                                                                             CGGTGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCG                  >  SRR4302541.2690089/1‑94 (MQ=60)
                                                                                TGCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATG               >  SRR4302541.7779929/1‑94 (MQ=60)
                                                                                 GCCCACTGCGGGCTCCAGGTATAACCCCCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGG              <  SRR4302541.4217709/94‑1 (MQ=60)
                                                                                 GCCCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGG              >  SRR4302541.4559977/1‑94 (MQ=60)
                                                                                  CCCCCTTCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCCCTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGG             <  SRR4302541.1945498/94‑1 (MQ=60)
                                                                                   CCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGA            <  SRR4302541.6670139/94‑1 (MQ=60)
                                                                                   CCACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGA            >  SRR4302541.2009785/1‑94 (MQ=60)
                                                                                    CACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGAC           >  SRR4302541.1073054/1‑94 (MQ=60)
                                                                                     ACTGGGGGTTCCAGGTATAACCCCCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACG          <  SRR4302541.4794777/94‑1 (MQ=60)
                                                                                     ACTGCGGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACG          >  SRR4302541.3268009/1‑94 (MQ=60)
                                                                                      CTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGC         >  SRR4302541.202777/1‑94 (MQ=60)
                                                                                         CGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGC      >  SRR4302541.5973213/1‑94 (MQ=60)
                                                                                          GGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCA     <  SRR4302541.8763266/94‑1 (MQ=60)
                                                                                          GGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCA     >  SRR4302541.6054861/1‑94 (MQ=60)
                                                                                          GGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCA     <  SRR4302541.4448306/94‑1 (MQ=60)
                                                                                          GGGCTCCAGGTATAACCGCCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCA     <  SRR4302541.1705667/94‑1 (MQ=60)
                                                                                          GGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCA     <  SRR4302541.3414341/94‑1 (MQ=60)
                                                                                          GGGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCA     >  SRR4302541.6694678/1‑94 (MQ=60)
                                                                                           GGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCAG    <  SRR4302541.2868191/94‑1 (MQ=60)
                                                                                           GGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCAG    <  SRR4302541.3906147/94‑1 (MQ=60)
                                                                                           GGCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCAG    >  SRR4302541.936843/1‑94 (MQ=60)
                                                                                            GCTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCAGG   <  SRR4302541.4265118/94‑1 (MQ=60)
                                                                                             TTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCAGGC  <  SRR4302541.8656856/94‑1 (MQ=60)
                                                                                             CTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCAGGC  >  SRR4302541.4494242/1‑94 (MQ=60)
                                                                                             |                                                                                             
TTTGATCCCGGATTTTCGCGCCATAAGCGAATACCTTCATTCAGGCGTGGCAGACTGTTATTGATTAAATTAGAGCTCGGTGCCCACTGCGGGTTCCAGGTATAACCACCTCCGAGCACCACGATATAGTCCACTTTTTGCGAATTATTCCATGTCGGATAGGTGCTTTCGATGGGACGCAGCAGGC  >  NC_000913/972257‑972443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑