Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
AGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAATCGC  >  NC_000913/1125624‑1125808
                                                                                            |                                                                                            
AGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGC                                                                                             >  SRR4302541.3680586/1‑94 (MQ=60)
  CAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGC                                                                                           >  SRR4302541.845850/1‑94 (MQ=60)
  CAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGC                                                                                           >  SRR4302541.3543277/1‑94 (MQ=60)
   AACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCC                                                                                          >  SRR4302541.3973868/1‑94 (MQ=60)
     CGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAG                                                                                        <  SRR4302541.7615916/94‑1 (MQ=60)
     CGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAG                                                                                        <  SRR4302541.5772113/94‑1 (MQ=60)
     CGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAG                                                                                        <  SRR4302541.1549123/94‑1 (MQ=60)
      GTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTTGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGG                                                                                       >  SRR4302541.5428893/1‑94 (MQ=60)
      GTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGG                                                                                       <  SRR4302541.651624/94‑1 (MQ=60)
      GTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGG                                                                                       >  SRR4302541.488641/1‑94 (MQ=60)
      GTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGG                                                                                       >  SRR4302541.814033/1‑94 (MQ=60)
      GTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGG                                                                                       >  SRR4302541.2458395/1‑94 (MQ=60)
       TTTTTGTAATTCAGAATTTGTCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGT                                                                                      <  SRR4302541.5041260/94‑1 (MQ=60)
       TTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGT                                                                                      <  SRR4302541.4787690/94‑1 (MQ=60)
       TTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGT                                                                                      <  SRR4302541.4787689/94‑1 (MQ=60)
       TTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGT                                                                                      <  SRR4302541.7426880/94‑1 (MQ=60)
       TTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGT                                                                                      >  SRR4302541.8348823/1‑94 (MQ=60)
        TTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTG                                                                                     <  SRR4302541.62757/94‑1 (MQ=60)
        TTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTG                                                                                     <  SRR4302541.2535145/94‑1 (MQ=60)
            GTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACT                                                                                 <  SRR4302541.984826/94‑1 (MQ=60)
            GTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACT                                                                                 <  SRR4302541.2150663/94‑1 (MQ=60)
              AATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGC                                                                               >  SRR4302541.4674423/1‑94 (MQ=60)
              AATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGC                                                                               >  SRR4302541.5477817/1‑94 (MQ=60)
               ATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCG                                                                              >  SRR4302541.4412993/1‑94 (MQ=60)
               ATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCG                                                                              >  SRR4302541.196406/1‑94 (MQ=60)
               ATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCG                                                                              <  SRR4302541.6328335/94‑1 (MQ=60)
                 TCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCA                                                                            <  SRR4302541.8390817/94‑1 (MQ=60)
                  CAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAG                                                                           >  SRR4302541.6608948/1‑94 (MQ=60)
                   AGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGC                                                                          >  SRR4302541.1547461/1‑94 (MQ=60)
                   AGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGC                                                                          >  SRR4302541.5100813/1‑94 (MQ=60)
                   AGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGC                                                                          >  SRR4302541.7511106/1‑94 (MQ=60)
                   AGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGC                                                                          >  SRR4302541.1845640/1‑94 (MQ=60)
                     AATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTACCCAGACGCCAGGTGAACTGCGCAGCCG                                                                        >  SRR4302541.135408/1‑94 (MQ=60)
                      ATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGC                                                                       >  SRR4302541.5040916/1‑94 (MQ=60)
                      ATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGC                                                                       >  SRR4302541.1718815/1‑94 (MQ=60)
                      ATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGC                                                                       <  SRR4302541.756495/94‑1 (MQ=60)
                        TTGGGGATCTCAAACTGAGCGCAGCCGGAGTGGCTGTAATCACCACGTTGTTATTGCGGGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGC                                                                     <  SRR4302541.2984228/94‑1 (MQ=60)
                         TGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCCCGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCC                                                                    >  SRR4302541.7161538/1‑94 (MQ=60)
                         TGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCC                                                                    <  SRR4302541.7707108/94‑1 (MQ=60)
                          GGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCG                                                                   <  SRR4302541.4908216/94‑1 (MQ=60)
                            CGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCG                                                                 >  SRR4302541.1910503/1‑94 (MQ=60)
                            CGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCG                                                                 <  SRR4302541.3004260/94‑1 (MQ=60)
                             GATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGC                                                                >  SRR4302541.6405910/1‑94 (MQ=60)
                             GATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGC                                                                <  SRR4302541.8768359/94‑1 (MQ=60)
                             GATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCAAGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGC                                                                >  SRR4302541.8685849/1‑94 (MQ=60)
                              ATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCG                                                               <  SRR4302541.8521872/94‑1 (MQ=60)
                               TCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGA                                                              >  SRR4302541.4639379/1‑94 (MQ=60)
                               TCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGA                                                              >  SRR4302541.504974/1‑94 (MQ=60)
                                CTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGCA                                                             >  SRR4302541.7940933/1‑94 (MQ=60)
                                CTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAA                                                             >  SRR4302541.6258449/1‑94 (MQ=60)
                                CTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAA                                                             >  SRR4302541.7993277/1‑94 (MQ=60)
                                     ACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTAT                                                        >  SRR4302541.5005564/1‑94 (MQ=60)
                                      CTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATG                                                       >  SRR4302541.8332205/1‑94 (MQ=60)
                                      CTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATG                                                       >  SRR4302541.2920968/1‑94 (MQ=60)
                                      CTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATG                                                       <  SRR4302541.8070073/94‑1 (MQ=60)
                                       TGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGA                                                      <  SRR4302541.3805588/94‑1 (MQ=60)
                                       TGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGA                                                      <  SRR4302541.4810875/94‑1 (MQ=60)
                                        GAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAA                                                     >  SRR4302541.2843017/1‑94 (MQ=60)
                                        GAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAA                                                     <  SRR4302541.7386932/94‑1 (MQ=60)
                                        GAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCAAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAA                                                     <  SRR4302541.3666996/94‑1 (MQ=60)
                                         AGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAAT                                                    <  SRR4302541.650814/94‑1 (MQ=60)
                                           CGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTC                                                  >  SRR4302541.2321279/1‑94 (MQ=60)
                                           CGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTC                                                  >  SRR4302541.3332921/1‑94 (MQ=60)
                                           CGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTC                                                  <  SRR4302541.2716833/94‑1 (MQ=60)
                                           CGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTC                                                  >  SRR4302541.3309553/1‑94 (MQ=60)
                                            GCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCA                                                 >  SRR4302541.2751640/1‑94 (MQ=60)
                                             CAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAG                                                >  SRR4302541.8679789/1‑94 (MQ=60)
                                             CAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAG                                                >  SRR4302541.4686195/1‑94 (MQ=60)
                                              AGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGC                                               <  SRR4302541.5572644/94‑1 (MQ=60)
                                              AGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGC                                               >  SRR4302541.8899661/1‑94 (MQ=60)
                                                 GGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGAT                                            <  SRR4302541.4100066/94‑1 (MQ=60)
                                                 GGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGAT                                            >  SRR4302541.3915448/1‑94 (MQ=60)
                                                 GGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGAT                                            >  SRR4302541.3407338/1‑94 (MQ=60)
                                                 GGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGAT                                            <  SRR4302541.729422/94‑1 (MQ=60)
                                                  GAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATA                                           <  SRR4302541.2312146/94‑1 (MQ=60)
                                                   AAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATAT                                          <  SRR4302541.4337450/94‑1 (MQ=60)
                                                   AAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATAT                                          <  SRR4302541.2063906/94‑1 (MQ=60)
                                                   AAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCAAGTTGAACTGCGCAGCCGCGCCGCGCGACTGTATGAATTCAGCGATAT                                          >  SRR4302541.1334494/1‑94 (MQ=60)
                                                    AGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATG                                         <  SRR4302541.5574807/94‑1 (MQ=60)
                                                    AGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATG                                         >  SRR4302541.1788882/1‑94 (MQ=60)
                                                    AGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATG                                         >  SRR4302541.8379983/1‑94 (MQ=60)
                                                     GTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGG                                        <  SRR4302541.6583761/94‑1 (MQ=60)
                                                      TGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGC                                       >  SRR4302541.4241534/1‑94 (MQ=60)
                                                       GGCGTTAATCACCCCGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCG                                      >  SRR4302541.7145483/1‑94 (MQ=60)
                                                       GGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCG                                      <  SRR4302541.2124938/94‑1 (MQ=60)
                                                       GGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCG                                      <  SRR4302541.2860353/94‑1 (MQ=60)
                                                        GCGTTAATCACCCCGTTGTTATTGCGTGGTCCCCAGGCGCCAGTTGACCTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATTGCGG                                     <  SRR4302541.112518/94‑1 (MQ=60)
                                                          GTTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAA                                   >  SRR4302541.6291079/1‑94 (MQ=60)
                                                           TTAATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAG                                  >  SRR4302541.7320333/1‑94 (MQ=60)
                                                             AATCACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTG                                >  SRR4302541.1796619/1‑94 (MQ=60)
                                                               TCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGA                              <  SRR4302541.2623960/94‑1 (MQ=60)
                                                                taccacgcgGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAG                             <  SRR4302541.2877429/85‑1 (MQ=60)
                                                                CACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAG                             <  SRR4302541.2629859/94‑1 (MQ=60)
                                                                CACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAG                             <  SRR4302541.4572544/94‑1 (MQ=60)
                                                                CACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGGGGAG                             >  SRR4302541.2388131/1‑94 (MQ=60)
                                                                 nnnccgtntTTATTGCGNGGNNCNCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGT                            <  SRR4302541.6667935/85‑1 (MQ=60)
                                                                 NNNACGTNGNTATTGCGNGGNNNNCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGT                            <  SRR4302541.6667933/94‑1 (MQ=60)
                                                                 ACCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGT                            <  SRR4302541.2733713/94‑1 (MQ=60)
                                                                  CCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTG                           >  SRR4302541.5401901/1‑94 (MQ=60)
                                                                  CCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTC                           <  SRR4302541.12945/94‑1 (MQ=60)
                                                                  CCACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTC                           >  SRR4302541.4106066/1‑94 (MQ=60)
                                                                   CACGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCG                          >  SRR4302541.8571264/1‑94 (MQ=60)
                                                                    CCGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGA                         <  SRR4302541.2511850/94‑1 (MQ=60)
                                                                    ACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGA                         >  SRR4302541.562332/1‑94 (MQ=60)
                                                                     CGTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGAC                        <  SRR4302541.8801954/94‑1 (MQ=60)
                                                                     CGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGAC                        >  SRR4302541.2460269/1‑94 (MQ=60)
                                                                      GTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACG                       >  SRR4302541.1491228/1‑94 (MQ=60)
                                                                      GTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACG                       >  SRR4302541.1975141/1‑94 (MQ=60)
                                                                      GTTGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACG                       <  SRR4302541.7734840/94‑1 (MQ=60)
                                                                      GTTGTTATTGCGTGGTGCCCAGGCGCCAGGGGAACTGCGCAGCCGCGCCGCGCGAATGGATGAATTCAGCCATATGGCGGtaggggaggcgggg                       >  SRR4302541.1491227/1‑80 (MQ=60)
                                                                      GTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACG                       >  SRR4302541.4243587/1‑94 (MQ=60)
                                                                       TTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGC                      >  SRR4302541.2930399/1‑94 (MQ=60)
                                                                        TGTTATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCT                     <  SRR4302541.8188817/94‑1 (MQ=60)
                                                                          TTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGG                   >  SRR4302541.5997202/1‑94 (MQ=60)
                                                                          TTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGG                   <  SRR4302541.4525649/94‑1 (MQ=60)
                                                                           TATTGCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGA                  <  SRR4302541.8356148/94‑1 (MQ=60)
                                                                           TATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGA                  <  SRR4302541.2501656/94‑1 (MQ=60)
                                                                               GCGTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAA              >  SRR4302541.6776974/1‑94 (MQ=60)
                                                                                 GTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACT            <  SRR4302541.6764718/94‑1 (MQ=60)
                                                                                 GTGGTGCCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACG            >  SRR4302541.3064509/1‑94 (MQ=60)
                                                                                   GGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGG          <  SRR4302541.5200514/94‑1 (MQ=60)
                                                                                       CCCAGGCGCCAGGTGAGCTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAA      <  SRR4302541.5308004/94‑1 (MQ=60)
                                                                                       CCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAA      <  SRR4302541.5503739/94‑1 (MQ=60)
                                                                                       CCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAA      >  SRR4302541.5959949/1‑94 (MQ=60)
                                                                                       CCCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAA      <  SRR4302541.5308002/94‑1 (MQ=60)
                                                                                        CCAGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAAT     <  SRR4302541.6548142/94‑1 (MQ=60)
                                                                                         CAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAATC    <  SRR4302541.4662412/94‑1 (MQ=60)
                                                                                          AGGCGCCAGGTGAACTGCGCAGCCGCGCTGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAATCG   >  SRR4302541.2849781/1‑94 (MQ=60)
                                                                                          AGGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAATCG   >  SRR4302541.3951130/1‑94 (MQ=60)
                                                                                          AGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAATCG   <  SRR4302541.7968050/94‑1 (MQ=60)
                                                                                          AGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAATCG   >  SRR4302541.7480512/1‑94 (MQ=60)
                                                                                          AGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAATCG   <  SRR4302541.1610258/94‑1 (MQ=60)
                                                                                           GGCGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAATCGC  >  SRR4302541.5747343/1‑94 (MQ=60)
                                                                                            |                                                                                            
AGCAACGTTTTTGTAATTCAGAATTTGGCGATCTGAAACTGAGCGCAGCGGAAGTGGCGTTAATCACCACGTTGTTATTGCGTGGTGCCCAGACGCCAGGTGAACTGCGCAGCCGCGCCGCGCGAATGTATGAATTCAGCGATATGGCGGAAGTGGAGTCGACGCTGGAACAACTGGCAAATCGC  >  NC_000913/1125624‑1125808

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑