Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTAACCTGT  >  NC_000913/1129640‑1129826
                                                                                             |                                                                                             
TTGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGT                                                                                               >  SRR4302541.3714700/1‑94 (MQ=60)
 TGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTT                                                                                              >  SRR4302541.7990867/1‑94 (MQ=60)
 TGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTT                                                                                              >  SRR4302541.3609332/1‑94 (MQ=60)
 TGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCT                                                                                              >  SRR4302541.5082324/1‑94 (MQ=60)
  GATCGGGTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTT                                                                                             <  SRR4302541.1389774/94‑1 (MQ=60)
     CGGGTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAG                                                                                          <  SRR4302541.2253970/94‑1 (MQ=60)
        GTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTT                                                                                       <  SRR4302541.8694298/94‑1 (MQ=60)
        GTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTT                                                                                       <  SRR4302541.6314603/94‑1 (MQ=60)
         TGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTG                                                                                      <  SRR4302541.999058/94‑1 (MQ=60)
         TGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTG                                                                                      >  SRR4302541.4110569/1‑94 (MQ=60)
         TGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTG                                                                                      >  SRR4302541.1683692/1‑94 (MQ=60)
         TGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTG                                                                                      <  SRR4302541.5157038/94‑1 (MQ=60)
         TGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTG                                                                                      >  SRR4302541.4840950/1‑94 (MQ=60)
          GATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGA                                                                                     <  SRR4302541.3409316/94‑1 (MQ=60)
           ATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGAC                                                                                    >  SRR4302541.7398383/1‑94 (MQ=60)
             AGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACAT                                                                                  >  SRR4302541.2691473/1‑94 (MQ=60)
             AGACCGCGCAGCCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACAT                                                                                  <  SRR4302541.8018543/94‑1 (MQ=60)
              GATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATT                                                                                 <  SRR4302541.6309390/94‑1 (MQ=60)
               ATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTG                                                                                >  SRR4302541.6026421/1‑94 (MQ=60)
                TCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGC                                                                               <  SRR4302541.7065645/94‑1 (MQ=60)
                 CGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCC                                                                              <  SRR4302541.3107314/94‑1 (MQ=60)
                 CGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCC                                                                              <  SRR4302541.6820041/94‑1 (MQ=60)
                 CGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCC                                                                              <  SRR4302541.3627158/94‑1 (MQ=60)
                 CGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCC                                                                              <  SRR4302541.3627160/94‑1 (MQ=60)
                  GCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCA                                                                             <  SRR4302541.8107952/94‑1 (MQ=60)
                   CGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAG                                                                            >  SRR4302541.2963223/1‑94 (MQ=60)
                   CGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAG                                                                            <  SRR4302541.7473790/94‑1 (MQ=60)
                   CGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAG                                                                            >  SRR4302541.7761791/1‑94 (MQ=60)
                   CGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAG                                                                            >  SRR4302541.2963222/1‑94 (MQ=60)
                    GCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGC                                                                           <  SRR4302541.3737843/94‑1 (MQ=60)
                    GCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGC                                                                           <  SRR4302541.6116666/94‑1 (MQ=60)
                     CAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCT                                                                          >  SRR4302541.7222797/1‑94 (MQ=60)
                     CAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCT                                                                          >  SRR4302541.5353879/1‑94 (MQ=60)
                     CAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCT                                                                          <  SRR4302541.5659602/94‑1 (MQ=60)
                      AGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTT                                                                         >  SRR4302541.5449058/1‑94 (MQ=60)
                      AGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTT                                                                         >  SRR4302541.8859245/1‑94 (MQ=60)
                       GGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGTTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTC                                                                        >  SRR4302541.6142931/1‑94 (MQ=60)
                         CTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCA                                                                      <  SRR4302541.5448557/94‑1 (MQ=60)
                         CTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCA                                                                      <  SRR4302541.8836012/94‑1 (MQ=60)
                         CTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCA                                                                      >  SRR4302541.506010/1‑94 (MQ=60)
                         CTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCA                                                                      <  SRR4302541.2141398/94‑1 (MQ=60)
                          TAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAG                                                                     <  SRR4302541.5724316/94‑1 (MQ=60)
                          TAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAG                                                                     >  SRR4302541.7946224/1‑94 (MQ=60)
                          TAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGGATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAG                                                                     >  SRR4302541.7946223/1‑94 (MQ=60)
                           AATGCGATCAGCAAGTTGAGTGATATCCAGCACCGTACGCGGGGGCAGGGTATACAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGC                                                                    <  SRR4302541.3225957/94‑1 (MQ=60)
                            ATGGTATCAACAAGTTGATTGATATCCAGCAACGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCT                                                                   <  SRR4302541.4945769/94‑1 (MQ=60)
                               GCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTC                                                                <  SRR4302541.1956209/94‑1 (MQ=60)
                                 ATCAACAAGTTGATTGATATCCAGCAGCGTACGCGGTGGGAGGGTATGCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCT                                                              >  SRR4302541.8852111/1‑94 (MQ=60)
                                 ATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCT                                                              >  SRR4302541.4739082/1‑94 (MQ=60)
                                 ATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCT                                                              >  SRR4302541.502874/1‑94 (MQ=60)
                                 ATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCT                                                              <  SRR4302541.6094446/94‑1 (MQ=60)
                                 ATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCT                                                              >  SRR4302541.6071584/1‑94 (MQ=60)
                                  TCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTC                                                             <  SRR4302541.8546506/94‑1 (MQ=60)
                                   CAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCC                                                            <  SRR4302541.6308247/94‑1 (MQ=60)
                                    AACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCC                                                           >  SRR4302541.5515746/1‑94 (MQ=60)
                                    AACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCC                                                           >  SRR4302541.3113957/1‑94 (MQ=60)
                                    AACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCC                                                           >  SRR4302541.5459710/1‑94 (MQ=60)
                                      CAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCG                                                         <  SRR4302541.2056409/94‑1 (MQ=60)
                                      CAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCG                                                         <  SRR4302541.2544214/94‑1 (MQ=60)
                                       AAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGC                                                        >  SRR4302541.1567051/1‑94 (MQ=60)
                                        AGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCG                                                       <  SRR4302541.4304966/94‑1 (MQ=60)
                                        AGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCG                                                       >  SRR4302541.832729/1‑94 (MQ=60)
                                         GTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGC                                                      <  SRR4302541.1338798/94‑1 (MQ=60)
                                          TTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCA                                                     <  SRR4302541.4802953/94‑1 (MQ=60)
                                           TGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAA                                                    >  SRR4302541.483920/1‑94 (MQ=60)
                                             ATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATG                                                  <  SRR4302541.5530133/94‑1 (MQ=60)
                                              TTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGG                                                 >  SRR4302541.5127552/1‑94 (MQ=60)
                                              TTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGG                                                 <  SRR4302541.7120487/94‑1 (MQ=60)
                                               TGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGG                                                <  SRR4302541.2871218/94‑1 (MQ=60)
                                                 ATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCCATGGGCC                                              >  SRR4302541.1939371/1‑94 (MQ=60)
                                                 ATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCA                                              <  SRR4302541.6281735/94‑1 (MQ=60)
                                                   ATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGTATC                                            <  SRR4302541.3217653/94‑1 (MQ=60)
                                                   ATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCTGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATC                                            >  SRR4302541.8560075/1‑94 (MQ=60)
                                                   ATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATC                                            >  SRR4302541.1700751/1‑94 (MQ=60)
                                                    TCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCG                                           <  SRR4302541.632948/94‑1 (MQ=60)
                                                      CAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCG                                         <  SRR4302541.5453997/94‑1 (MQ=60)
                                                      CAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCG                                         <  SRR4302541.6107434/94‑1 (MQ=60)
                                                      CAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCG                                         <  SRR4302541.7058885/94‑1 (MQ=60)
                                                       AGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCTAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGG                                        >  SRR4302541.1494263/1‑94 (MQ=60)
                                                       AGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAGTGGGCATCGCGG                                        >  SRR4302541.5711165/1‑94 (MQ=60)
                                                       AGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGG                                        <  SRR4302541.144625/94‑1 (MQ=60)
                                                        GCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGC                                       <  SRR4302541.7693481/94‑1 (MQ=60)
                                                         CACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCA                                      <  SRR4302541.7901702/94‑1 (MQ=60)
                                                         CACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCA                                      <  SRR4302541.1339859/94‑1 (MQ=60)
                                                           CCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAAC                                    >  SRR4302541.4458761/1‑94 (MQ=60)
                                                           CCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAAC                                    <  SRR4302541.5231171/94‑1 (MQ=60)
                                                             GTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCA                                  >  SRR4302541.933813/1‑94 (MQ=60)
                                                               ACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACA                                <  SRR4302541.3596956/94‑1 (MQ=60)
                                                                CGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACAT                               <  SRR4302541.4787772/94‑1 (MQ=60)
                                                                CGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACAT                               <  SRR4302541.4051934/94‑1 (MQ=60)
                                                                CGCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACAT                               <  SRR4302541.7370476/94‑1 (MQ=60)
                                                                 GCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATA                              <  SRR4302541.3601739/94‑1 (MQ=60)
                                                                 GCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATA                              >  SRR4302541.1963059/1‑94 (MQ=60)
                                                                 GCGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATA                              >  SRR4302541.1959935/1‑94 (MQ=60)
                                                                  CGGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAA                             <  SRR4302541.1513441/94‑1 (MQ=60)
                                                                  CGGTGGCAGGGGATCCAGCCGTCCGCGATTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCCACCACATAA                             >  SRR4302541.3413120/1‑94 (MQ=60)
                                                                   GGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAAT                            >  SRR4302541.8594812/1‑94 (MQ=60)
                                                                   GGTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAAT                            <  SRR4302541.8016430/94‑1 (MQ=60)
                                                                    GTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATT                           <  SRR4302541.5308940/94‑1 (MQ=60)
                                                                    GTGGCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATT                           <  SRR4302541.4601693/94‑1 (MQ=60)
                                                                     TGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTT                          >  SRR4302541.7124483/1‑94 (MQ=60)
                                                                       GCAGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCC                        <  SRR4302541.2466699/94‑1 (MQ=60)
                                                                         AGGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTG                      >  SRR4302541.2439181/1‑94 (MQ=60)
                                                                          GGGTATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGT                     >  SRR4302541.7424913/1‑94 (MQ=60)
                                                                            GTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGG                   <  SRR4302541.5665786/94‑1 (MQ=60)
                                                                             TATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGC                  <  SRR4302541.1023475/94‑1 (MQ=60)
                                                                             TATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGC                  >  SRR4302541.6716125/1‑94 (MQ=60)
                                                                              ATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCC                 >  SRR4302541.7246577/1‑94 (MQ=60)
                                                                              ATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCC                 <  SRR4302541.6525096/94‑1 (MQ=60)
                                                                              ATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCC                 <  SRR4302541.6525095/94‑1 (MQ=60)
                                                                              ATCCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCC                 >  SRR4302541.3669923/1‑94 (MQ=60)
                                                                                CCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTG               <  SRR4302541.6547541/94‑1 (MQ=60)
                                                                                CCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTG               <  SRR4302541.5277493/94‑1 (MQ=60)
                                                                                CCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTG               <  SRR4302541.4676423/94‑1 (MQ=60)
                                                                                CCAGCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTG               >  SRR4302541.5116471/1‑94 (MQ=60)
                                                                                   GCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTAC            <  SRR4302541.6964946/94‑1 (MQ=60)
                                                                                   GCCGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTAC            <  SRR4302541.3163311/94‑1 (MQ=60)
                                                                                     CGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACAT          >  SRR4302541.4630090/1‑94 (MQ=60)
                                                                                     CGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACAT          <  SRR4302541.1045045/94‑1 (MQ=60)
                                                                                     CGTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACAT          >  SRR4302541.1566628/1‑94 (MQ=60)
                                                                                      GTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATT         >  SRR4302541.810388/1‑94 (MQ=60)
                                                                                      GTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATT         >  SRR4302541.7184221/1‑94 (MQ=60)
                                                                                      GTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATT         >  SRR4302541.2912581/1‑94 (MQ=60)
                                                                                      GTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATT         <  SRR4302541.6236968/94‑1 (MQ=60)
                                                                                      GTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATT         <  SRR4302541.626554/94‑1 (MQ=60)
                                                                                      GTCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATT         >  SRR4302541.7042794/1‑94 (MQ=60)
                                                                                       TCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTA        >  SRR4302541.1009958/1‑94 (MQ=60)
                                                                                       TCCGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTA        >  SRR4302541.5766168/1‑94 (MQ=60)
                                                                                         CGCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTAAC      <  SRR4302541.5092622/94‑1 (MQ=60)
                                                                                          GCGCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTAACC     >  SRR4302541.2710033/1‑94 (MQ=60)
                                                                                            GTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTAACCTG   >  SRR4302541.7776836/1‑94 (MQ=60)
                                                                                            GTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTAACCTG   >  SRR4302541.3277751/1‑94 (MQ=60)
                                                                                            GCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTAACCTG   <  SRR4302541.3195532/94‑1 (MQ=60)
                                                                                            GCTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTAACCTG   >  SRR4302541.1703505/1‑94 (MQ=60)
                                                                                             CTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTAACCTGT  <  SRR4302541.1041065/94‑1 (MQ=60)
                                                                                             |                                                                                             
TTGATCGGGTGATAGATCGCGCAGGCTAATGGCATCAACAAGTTGATTGATATCCAGCACCGTACGCGGTGGCAGGGTATCCAGCCGTCCGCGTTTCAGTTTGACATTGCCAGCTTCCAGCTTTCCTCCCCGCGCAATGGGCATCGCGGCAACCACATAATTTCCTGTGGCCTGTACATTAACCTGT  >  NC_000913/1129640‑1129826

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑