Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

N/A

GATK/CNVnator alignment

BRESEQ :: bam2aln output
GGGCAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAAGTGCAG  >  NC_000913/1133355‑1133540
                                                                                             |                                                                                            
GGGCAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCG                                                                                              <  SRR4302541.4533499/94‑1 (MQ=60)
GGGCAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCG                                                                                              <  SRR4302541.397724/94‑1 (MQ=60)
GGGCAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCG                                                                                              <  SRR4302541.199763/94‑1 (MQ=60)
GGGCAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCG                                                                                              <  SRR4302541.8038136/94‑1 (MQ=60)
 GGCAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGC                                                                                             <  SRR4302541.5882740/94‑1 (MQ=60)
 GGCAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCAC                                                                                             >  SRR4302541.4139570/1‑94 (MQ=60)
  GCAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCA                                                                                            <  SRR4302541.4765229/94‑1 (MQ=60)
   CAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAA                                                                                           >  SRR4302541.5785803/1‑94 (MQ=60)
    AACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAAT                                                                                          <  SRR4302541.5573486/94‑1 (MQ=60)
    AACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAAT                                                                                          >  SRR4302541.3786324/1‑94 (MQ=60)
     ACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATC                                                                                         <  SRR4302541.363751/94‑1 (MQ=60)
     ACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATC                                                                                         <  SRR4302541.2085632/94‑1 (MQ=60)
       TGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTC                                                                                       >  SRR4302541.7091050/1‑94 (MQ=60)
       TGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTC                                                                                       >  SRR4302541.1839789/1‑94 (MQ=60)
        GACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCG                                                                                      <  SRR4302541.6335319/94‑1 (MQ=60)
         ACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGG                                                                                     <  SRR4302541.2609323/94‑1 (MQ=60)
           AATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCG                                                                                   >  SRR4302541.142197/1‑94 (MQ=60)
           AATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCG                                                                                   >  SRR4302541.95909/1‑94 (MQ=60)
           AATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCG                                                                                   >  SRR4302541.7102414/1‑94 (MQ=60)
           AATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCG                                                                                   >  SRR4302541.5452682/1‑94 (MQ=60)
           AATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCG                                                                                   <  SRR4302541.7621602/94‑1 (MQ=60)
           AATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCG                                                                                   <  SRR4302541.7621601/94‑1 (MQ=60)
            ATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGC                                                                                  >  SRR4302541.985745/1‑94 (MQ=60)
             TTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCT                                                                                 >  SRR4302541.583576/1‑94 (MQ=60)
              TCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTC                                                                                >  SRR4302541.5147113/1‑94 (MQ=60)
              TCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTC                                                                                >  SRR4302541.6195194/1‑94 (MQ=60)
               CAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCA                                                                               >  SRR4302541.2529924/1‑94 (MQ=60)
                AGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAA                                                                              <  SRR4302541.1526501/94‑1 (MQ=60)
                AGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAA                                                                              >  SRR4302541.8391724/1‑94 (MQ=60)
                 GGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAAT                                                                             <  SRR4302541.5426331/94‑1 (MQ=60)
                   ggactccggtggtgggctagggTGGGCCAATGGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCC                                                                           <  SRR4302541.4634510/72‑1 (MQ=60)
                   GGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCC                                                                           >  SRR4302541.2069598/1‑94 (MQ=60)
                   GGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCC                                                                           <  SRR4302541.4634509/94‑1 (MQ=60)
                   GGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCC                                                                           <  SRR4302541.4503571/94‑1 (MQ=60)
                    GCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCG                                                                          <  SRR4302541.3176169/94‑1 (MQ=60)
                     CATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGG                                                                         >  SRR4302541.8095007/1‑94 (MQ=60)
                      ATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGG                                                                        >  SRR4302541.120118/1‑94 (MQ=60)
                      ATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGG                                                                        <  SRR4302541.8046775/94‑1 (MQ=60)
                      ATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGG                                                                        >  SRR4302541.7139196/1‑94 (MQ=60)
                      ATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGG                                                                        >  SRR4302541.328779/1‑94 (MQ=60)
                         CGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGA                                                                     >  SRR4302541.2245942/1‑94 (MQ=60)
                          GGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGAT                                                                    <  SRR4302541.916402/94‑1 (MQ=60)
                          GGTGATAGGCGAGGCTGGGCCAATTGCTGATCCGGAAGGGACGGAAATCACTATTGCTAACGATGACGCAATCTCGCAGCTCAATCCGGGCGGT                                                                    >  SRR4302541.3550259/1‑94 (MQ=48)
                           GTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATC                                                                   <  SRR4302541.3375530/94‑1 (MQ=60)
                           GTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATC                                                                   >  SRR4302541.5177920/1‑94 (MQ=60)
                            TGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCC                                                                  <  SRR4302541.7008646/94‑1 (MQ=60)
                             GATAGGCGAGGCTGGGCCAATTGCTGTTCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCG                                                                 <  SRR4302541.5985909/94‑1 (MQ=60)
                               TAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGC                                                               >  SRR4302541.5838886/1‑94 (MQ=60)
                                   GGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAAT                                                           <  SRR4302541.4721002/94‑1 (MQ=60)
                                   GGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGCAAATCACTATTGCTGCCGATGGCGCAAGCTCGGCGCTCAATCCGGGCGATCCGGCAAAT                                                           <  SRR4302541.1424161/94‑1 (MQ=60)
                                   CGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAAT                                                           <  SRR4302541.5502978/94‑1 (MQ=60)
                                    GAGGCTGGGCTAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATA                                                          <  SRR4302541.1871237/94‑1 (MQ=60)
                                    GAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATA                                                          >  SRR4302541.4410556/1‑94 (MQ=60)
                                     AGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATAC                                                         >  SRR4302541.2522236/1‑94 (MQ=60)
                                      GGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACG                                                        <  SRR4302541.2524101/94‑1 (MQ=60)
                                      GGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAACTACG                                                        >  SRR4302541.2514292/1‑94 (MQ=60)
                                      GGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACG                                                        >  SRR4302541.2404815/1‑94 (MQ=60)
                                        CTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGT                                                      <  SRR4302541.1329776/94‑1 (MQ=60)
                                         TGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTT                                                     >  SRR4302541.168807/1‑94 (MQ=60)
                                         TGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTT                                                     >  SRR4302541.5092268/1‑94 (MQ=60)
                                         TGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTT                                                     >  SRR4302541.808555/1‑94 (MQ=60)
                                          GGGCCAGTTTCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTG                                                    <  SRR4302541.4508506/94‑1 (MQ=60)
                                          GGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTG                                                    >  SRR4302541.6268299/1‑94 (MQ=60)
                                          GGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTG                                                    <  SRR4302541.1278746/94‑1 (MQ=60)
                                          GGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTG                                                    <  SRR4302541.6362653/94‑1 (MQ=60)
                                           GGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGC                                                   >  SRR4302541.816225/1‑94 (MQ=60)
                                           GGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGC                                                   >  SRR4302541.528644/1‑94 (MQ=60)
                                            GCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCG                                                  >  SRR4302541.2434691/1‑94 (MQ=60)
                                            GCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCG                                                  <  SRR4302541.2670283/94‑1 (MQ=60)
                                              CAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCC                                                >  SRR4302541.3930428/1‑94 (MQ=60)
                                               AATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCA                                               >  SRR4302541.1673158/1‑94 (MQ=60)
                                                 TTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGT                                             <  SRR4302541.3492836/94‑1 (MQ=60)
                                                  TGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAGATACGGTTGCGCCAGTA                                            >  SRR4302541.4806969/1‑94 (MQ=60)
                                                  TGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTA                                            <  SRR4302541.4152387/94‑1 (MQ=60)
                                                    CTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGG                                          >  SRR4302541.4855287/1‑94 (MQ=60)
                                                     TGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGG                                         >  SRR4302541.393147/1‑94 (MQ=60)
                                                       GGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCG                                       <  SRR4302541.6615108/94‑1 (MQ=60)
                                                        GCCGGAAGGGGCGGAAATCTCTATTGCTGCCGATGGCGCAATCTCGTCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGT                                      <  SRR4302541.4904229/94‑1 (MQ=60)
                                                        GCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGT                                      <  SRR4302541.597195/94‑1 (MQ=60)
                                                        GCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGT                                      <  SRR4302541.4904228/94‑1 (MQ=60)
                                                         CCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTC                                     >  SRR4302541.5509248/1‑94 (MQ=60)
                                                         CCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTC                                     >  SRR4302541.1776555/1‑94 (MQ=60)
                                                          CGGAAGGGGTGGAAAACACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCT                                    <  SRR4302541.5664098/94‑1 (MQ=60)
                                                          CGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCT                                    >  SRR4302541.8398761/1‑94 (MQ=60)
                                                          CGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCT                                    <  SRR4302541.3991631/94‑1 (MQ=60)
                                                          CGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCT                                    >  SRR4302541.2920328/1‑94 (MQ=60)
                                                          CGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCT                                    >  SRR4302541.4333459/1‑94 (MQ=60)
                                                          CGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCT                                    <  SRR4302541.2493204/94‑1 (MQ=60)
                                                           GGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTT                                   >  SRR4302541.2009070/1‑94 (MQ=60)
                                                           GGAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTT                                   >  SRR4302541.4805552/1‑94 (MQ=60)
                                                           GGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTAAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTT                                   <  SRR4302541.4651374/94‑1 (MQ=60)
                                                            GAAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTA                                  >  SRR4302541.5108485/1‑94 (MQ=60)
                                                             AAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAA                                 >  SRR4302541.2805249/1‑94 (MQ=60)
                                                             AAGGGGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAA                                 >  SRR4302541.2805248/1‑94 (MQ=60)
                                                                 GGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTG                             <  SRR4302541.8341514/94‑1 (MQ=60)
                                                                 GGCGGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTG                             >  SRR4302541.5424952/1‑94 (MQ=60)
                                                                 GGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTG                             <  SRR4302541.5275343/94‑1 (MQ=60)
                                                                    GGAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTG                          >  SRR4302541.460477/1‑94 (MQ=60)
                                                                    GGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTG                          >  SRR4302541.3571437/1‑94 (MQ=60)
                                                                     GAAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGA                         >  SRR4302541.8055132/1‑94 (MQ=60)
                                                                      AAATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAA                        >  SRR4302541.3058838/1‑94 (MQ=60)
                                                                       AATCACTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAA                       >  SRR4302541.13159/1‑94 (MQ=60)
                                                                       AATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAA                       <  SRR4302541.1807649/94‑1 (MQ=60)
                                                                       AATCACTATTACTGCCGATGGCACAATCTCGGCTCTCAATCCGGGCGACCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAA                       <  SRR4302541.7533656/94‑1 (MQ=60)
                                                                        ATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAACTACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAG                      >  SRR4302541.1263224/1‑94 (MQ=60)
                                                                           ACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCA                   <  SRR4302541.1138198/94‑1 (MQ=60)
                                                                            CTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCAC                  >  SRR4302541.4462117/1‑94 (MQ=60)
                                                                            CTATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCAC                  >  SRR4302541.6356355/1‑94 (MQ=60)
                                                                             TATTGCTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACG                 >  SRR4302541.8358905/1‑94 (MQ=60)
                                                                              ATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGG                <  SRR4302541.6989380/94‑1 (MQ=60)
                                                                                 GCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCA             <  SRR4302541.4074887/94‑1 (MQ=60)
                                                                                  CTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAG            >  SRR4302541.6419689/1‑94 (MQ=60)
                                                                                  CTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAG            >  SRR4302541.7882757/1‑94 (MQ=60)
                                                                                  CTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAG            >  SRR4302541.5416232/1‑94 (MQ=60)
                                                                                  CTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAG            >  SRR4302541.5416233/1‑94 (MQ=60)
                                                                                  CTGCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGAAAATACGGTTGCGCCACGAGGGCGCCTTACACTGGTGAAAGCCACGGGggg            >  SRR4302541.6419688/1‑91 (MQ=60)
                                                                                  CTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAG            >  SRR4302541.5271637/1‑94 (MQ=60)
                                                                                    GCCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCG          <  SRR4302541.6962294/94‑1 (MQ=60)
                                                                                     CCGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGA         >  SRR4302541.4832239/1‑94 (MQ=60)
                                                                                     CCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGA         <  SRR4302541.2587494/94‑1 (MQ=60)
                                                                                      CGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAA        >  SRR4302541.6181510/1‑94 (MQ=60)
                                                                                      CGATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAA        >  SRR4302541.2803549/1‑94 (MQ=60)
                                                                                       GATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAAG       >  SRR4302541.3519424/1‑94 (MQ=60)
                                                                                       GATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAAG       >  SRR4302541.8740101/1‑94 (MQ=60)
                                                                                       GATGGCGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAAG       <  SRR4302541.7049272/94‑1 (MQ=60)
                                                                                         TGGCGCAATCTCGGCGCTCAACCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAAGTG     <  SRR4302541.6495723/94‑1 (MQ=60)
                                                                                            CGCAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAAGTGCAG  >  SRR4302541.1998346/1‑94 (MQ=60)
                                                                                            CACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAAGTGCAG  <  SRR4302541.7753442/94‑1 (MQ=60)
                                                                                             |                                                                                            
GGGCAACTGACAATTCAGGGGCATCCGGTGATAGGCGAGGCTGGGCCAATTGCTGTGCCGGAAGGGGCGGAAATCACTATTGCTGCCGATGGCACAATCTCGGCGCTCAATCCGGGCGATCCGGCAAATACGGTTGCGCCAGTAGGGCGTCTTAAACTGGTGAAAGCCACGGGCAGCGAAGTGCAG  >  NC_000913/1133355‑1133540

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑