Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 881,233 T→C Y242C (TAC→TGC)  deoR ← DeoR

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913881,2330TC100.0% 696.3 / NA 198Y242C (TAC→TGC) deoRDeoR
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (91/107);  total (91/107)

Only 100 of 203 total aligned reads displayed.

GTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCA  >  NC_000913/881143‑881322
                                                                                          |                                                                                         
gTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCAc                                                                                         >  2:4928297/1‑93 (MQ=255)
gTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCAc                                                                                         <  1:1072623/93‑1 (MQ=255)
 ttCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACt                                                                                        <  2:1683646/93‑1 (MQ=255)
 ttCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACt                                                                                        >  1:1797660/1‑93 (MQ=255)
  tctcTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACtt                                                                                       <  2:1628858/93‑1 (MQ=255)
  tctcTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACtt                                                                                       <  2:6387029/93‑1 (MQ=255)
  tctcTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACtt                                                                                       >  2:5829015/1‑93 (MQ=255)
  tctcTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACtt                                                                                       <  1:1987856/93‑1 (MQ=255)
   ctctTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTc                                                                                      <  2:2168511/93‑1 (MQ=255)
   ctctTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTc                                                                                      >  2:158716/1‑93 (MQ=255)
   ctctTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTc                                                                                      <  2:5665736/93‑1 (MQ=255)
    tctTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTca                                                                                     >  2:1337404/1‑93 (MQ=255)
    tctTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTca                                                                                     >  1:5233599/1‑93 (MQ=255)
     ctTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTcac                                                                                    >  2:560949/1‑93 (MQ=255)
      ttAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTcaca                                                                                   <  1:382631/93‑1 (MQ=255)
      ttAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTcaca                                                                                   <  1:2050607/93‑1 (MQ=255)
      ttAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTcaca                                                                                   >  2:602239/1‑93 (MQ=255)
        aaTCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATa                                                                                 <  2:1098258/93‑1 (MQ=255)
         aTCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATAc                                                                                >  1:6192739/1‑93 (MQ=255)
          tcttctGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACt                                                                               <  1:1374936/93‑1 (MQ=255)
            ttctGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCa                                                                             <  1:2660946/93‑1 (MQ=255)
             tctGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCAt                                                                            >  1:3232378/1‑93 (MQ=255)
              ctGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATc                                                                           <  1:5073347/93‑1 (MQ=255)
              ctGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATc                                                                           <  1:2216104/93‑1 (MQ=255)
               tGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCt                                                                          <  2:2906298/93‑1 (MQ=255)
               tGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCt                                                                          >  1:3771968/1‑93 (MQ=255)
                gATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCtt                                                                         >  1:1383565/1‑93 (MQ=255)
                 aTAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTc                                                                        <  2:3273228/93‑1 (MQ=255)
                 aTAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTc                                                                        >  2:6146323/1‑93 (MQ=255)
                   aaCCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCg                                                                      >  2:4693863/1‑93 (MQ=255)
                   aaCCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCg                                                                      >  1:1284158/1‑93 (MQ=255)
                    aCCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCgg                                                                     <  2:5695567/93‑1 (MQ=255)
                    aCCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCgg                                                                     <  1:5977669/93‑1 (MQ=255)
                     ccGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCggg                                                                    <  2:5370229/93‑1 (MQ=255)
                     ccGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCggg                                                                    <  2:929219/93‑1 (MQ=255)
                      cGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGc                                                                   <  1:5347169/93‑1 (MQ=255)
                       ggATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGca                                                                  <  1:305542/93‑1 (MQ=255)
                         aTGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGcaac                                                                <  1:4121273/93‑1 (MQ=255)
                            gcgcGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAAt                                                             <  2:5424818/93‑1 (MQ=255)
                            gcgcGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAAt                                                             <  1:6463604/93‑1 (MQ=255)
                              gcgAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCg                                                           >  2:3859391/1‑93 (MQ=255)
                               cgAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGc                                                          <  2:2395394/93‑1 (MQ=255)
                                 aaaCGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTc                                                        <  1:1589819/93‑1 (MQ=255)
                                  aaCGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTca                                                       >  1:1512580/1‑93 (MQ=255)
                                   aCGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTcac                                                      >  2:2791077/1‑93 (MQ=255)
                                    cGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTcacc                                                     <  1:2817629/93‑1 (MQ=255)
                                    cGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTcacc                                                     <  1:4890915/93‑1 (MQ=255)
                                        aTCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACaa                                                 >  2:3636255/1‑93 (MQ=255)
                                        aTCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACaa                                                 >  1:4374656/1‑93 (MQ=255)
                                          ccGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAata                                               >  1:5643895/1‑93 (MQ=255)
                                           cGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAatat                                              <  1:234790/93‑1 (MQ=255)
                                           cGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAatat                                              >  1:4724080/1‑93 (MQ=255)
                                              ttATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCaa                                           >  2:815297/1‑93 (MQ=255)
                                               tataCGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCaaa                                          <  2:88890/93‑1 (MQ=255)
                                                ataCGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAg                                         <  2:324092/93‑1 (MQ=255)
                                                 taCGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGc                                        >  1:3639239/1‑93 (MQ=255)
                                                 taCGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGc                                        <  2:533357/93‑1 (MQ=255)
                                                    gTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGtt                                     <  2:4792685/93‑1 (MQ=255)
                                                    gTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGtt                                     >  2:6424487/1‑93 (MQ=255)
                                                    gTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGtt                                     <  1:673619/93‑1 (MQ=255)
                                                     tCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATCCTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGttt                                    <  1:3197401/93‑1 (MQ=255)
                                                     tCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGttt                                    <  2:5118086/93‑1 (MQ=255)
                                                      cATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTc                                   <  2:2363602/93‑1 (MQ=255)
                                                      cATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTc                                   >  1:290236/1‑93 (MQ=255)
                                                      cATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTc                                   <  2:403850/93‑1 (MQ=255)
                                                       aTTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCa                                  >  1:270071/1‑93 (MQ=255)
                                                       aTTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCa                                  <  1:2284028/93‑1 (MQ=255)
                                                        ttAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAg                                 >  1:5541552/1‑93 (MQ=255)
                                                        ttAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAg                                 >  1:5326460/1‑93 (MQ=255)
                                                         tAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAgg                                >  2:3311193/1‑93 (MQ=255)
                                                         tAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAgg                                <  1:3961893/93‑1 (MQ=255)
                                                           aTACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTc                              >  2:2676781/1‑93 (MQ=255)
                                                           aTACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTc                              <  1:3495559/93‑1 (MQ=255)
                                                           aTACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTc                              >  2:5065235/1‑93 (MQ=255)
                                                             aCATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCAc                            >  2:4258235/1‑93 (MQ=255)
                                                              cATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCAcc                           >  1:1858260/1‑93 (MQ=255)
                                                               aTCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCAccc                          >  2:2633523/1‑93 (MQ=255)
                                                                 cAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCAt                        >  1:222915/1‑93 (MQ=255)
                                                                 cAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCAt                        <  2:3048462/93‑1 (MQ=255)
                                                                 cAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCAt                        <  1:4416979/93‑1 (MQ=255)
                                                                  aaCTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATg                       >  1:1658635/1‑93 (MQ=255)
                                                                     ttAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATgcgc                    >  2:4417567/1‑93 (MQ=255)
                                                                     ttAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATgcgc                    >  2:1435708/1‑93 (MQ=255)
                                                                      tAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATgcgcg                   <  2:2486765/93‑1 (MQ=255)
                                                                        aTGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGcc                 <  2:1861954/93‑1 (MQ=255)
                                                                          gcgcTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCgg               >  1:2477637/1‑93 (MQ=255)
                                                                           cgcTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGa              <  1:1730252/93‑1 (MQ=255)
                                                                            gcTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGAc             <  2:4858025/93‑1 (MQ=255)
                                                                            gcTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGAc             >  1:864780/1‑93 (MQ=255)
                                                                               gCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCa          <  1:4829295/93‑1 (MQ=255)
                                                                               gCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCa          <  1:477/93‑1 (MQ=255)
                                                                                cGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCAc         >  2:4963255/1‑93 (MQ=255)
                                                                                 gTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCAcc        >  1:3397537/1‑93 (MQ=255)
                                                                                 gTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCAcc        <  1:5067502/93‑1 (MQ=255)
                                                                                  tCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCt       >  2:2781469/1‑93 (MQ=255)
                                                                                      cgcgCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGcc   <  1:1902765/93‑1 (MQ=255)
                                                                                      cgcgCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGcc   >  2:785864/1‑93 (MQ=255)
                                                                                       gcgcACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCa  <  1:575069/93‑1 (MQ=255)
                                                                                       gcgcACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCa  >  2:3911706/1‑93 (MQ=255)
                                                                                       gcgcACTGCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCa  <  2:3523739/93‑1 (MQ=255)
                                                                                          |                                                                                         
GTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCA  >  NC_000913/881143‑881322

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAAATT  >  NC_000913/881141‑881326
                                                                                            |                                                                                             
TGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCA                                                                                              <  SRR4302534.5921761/94‑1 (MQ=60)
 GGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCAC                                                                                             >  SRR4302534.2745242/1‑94 (MQ=60)
 GGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCAC                                                                                             <  SRR4302534.1390107/94‑1 (MQ=60)
 GGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCAC                                                                                             >  SRR4302534.228571/1‑94 (MQ=60)
  GTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACT                                                                                            >  SRR4302534.1844346/1‑94 (MQ=60)
  GTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACT                                                                                            <  SRR4302534.1100453/94‑1 (MQ=60)
   TTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTT                                                                                           >  SRR4302534.1968206/1‑94 (MQ=60)
   TTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTT                                                                                           >  SRR4302534.313098/1‑94 (MQ=60)
    TCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTC                                                                                          >  SRR4302534.5831931/1‑94 (MQ=60)
    TCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTC                                                                                          <  SRR4302534.2039908/94‑1 (MQ=60)
    TCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTC                                                                                          <  SRR4302534.1696689/94‑1 (MQ=60)
     CTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCA                                                                                         >  SRR4302534.6048639/1‑94 (MQ=60)
     CTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCA                                                                                         >  SRR4302534.2852415/1‑94 (MQ=60)
     CTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCA                                                                                         >  SRR4302534.5374895/1‑94 (MQ=60)
       CTTAATCTTCTGATAACCGGATTGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCACTGCGTCTGCGCGCACTTCACA                                                                                       >  SRR4302534.2081297/1‑94 (MQ=60)
        TTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACAT                                                                                      <  SRR4302534.2104195/94‑1 (MQ=60)
        TTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACAT                                                                                      <  SRR4302534.392418/94‑1 (MQ=60)
          AATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATAC                                                                                    >  SRR4302534.6361234/1‑94 (MQ=60)
            TCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTC                                                                                  >  SRR4302534.2548471/1‑94 (MQ=60)
            TCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTC                                                                                  <  SRR4302534.1411160/94‑1 (MQ=60)
             CTTCAGATAACCGGATGGCGCGAAGCGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACGCA                                                                                 <  SRR4302534.4876542/94‑1 (MQ=60)
              TTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCAT                                                                                <  SRR4302534.2731297/94‑1 (MQ=60)
              TTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCAT                                                                                <  SRR4302534.3488333/94‑1 (MQ=60)
              TTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCAT                                                                                >  SRR4302534.3318299/1‑94 (MQ=60)
               TCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATC                                                                               >  SRR4302534.4167795/1‑94 (MQ=60)
                TTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCATCTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCT                                                                              <  SRR4302534.1857509/94‑1 (MQ=60)
                CTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCT                                                                              >  SRR4302534.3873247/1‑94 (MQ=60)
                CTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCT                                                                              <  SRR4302534.2274789/94‑1 (MQ=60)
                CTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCT                                                                              <  SRR4302534.5210310/94‑1 (MQ=60)
                 TGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTT                                                                             >  SRR4302534.4868233/1‑94 (MQ=60)
                 TGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTT                                                                             >  SRR4302534.1419989/1‑94 (MQ=60)
                  GATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTC                                                                            <  SRR4302534.4521332/94‑1 (MQ=60)
                    TAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCG                                                                          >  SRR4302534.4051400/1‑94 (MQ=60)
                    TAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCG                                                                          >  SRR4302534.1317969/1‑94 (MQ=60)
                     AACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGG                                                                         <  SRR4302534.3285686/94‑1 (MQ=60)
                      ACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGG                                                                        <  SRR4302534.6140022/94‑1 (MQ=60)
                      ACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGG                                                                        <  SRR4302534.6641503/94‑1 (MQ=60)
                        CGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCA                                                                      <  SRR4302534.5491340/94‑1 (MQ=60)
                         GGATGGCGCGAAACGTCATCCGGTTGTACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAA                                                                     >  SRR4302534.6395428/1‑94 (MQ=60)
                         GGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAA                                                                     <  SRR4302534.313418/94‑1 (MQ=60)
                           ATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACA                                                                   <  SRR4302534.4232178/94‑1 (MQ=60)
                            TGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAA                                                                  >  SRR4302534.2244044/1‑94 (MQ=60)
                              GCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATC                                                                <  SRR4302534.6637694/94‑1 (MQ=60)
                                GCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGC                                                              >  SRR4302534.5204485/1‑94 (MQ=60)
                                GCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGC                                                              >  SRR4302534.1544439/1‑94 (MQ=60)
                                GCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGC                                                              >  SRR4302534.1628616/1‑94 (MQ=60)
                                   AAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCA                                                           <  SRR4302534.1631401/94‑1 (MQ=60)
                                   AAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCA                                                           >  SRR4302534.1743839/1‑94 (MQ=60)
                                   AAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCA                                                           >  SRR4302534.1552349/1‑94 (MQ=60)
                                      CGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCA                                                        <  SRR4302534.2891748/94‑1 (MQ=60)
                                      CGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCA                                                        <  SRR4302534.5023531/94‑1 (MQ=60)
                                         CATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAA                                                     >  SRR4302534.4492565/1‑94 (MQ=60)
                                           TCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATA                                                   >  SRR4302534.5796679/1‑94 (MQ=60)
                                            CCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATAT                                                  >  SRR4302534.4852376/1‑94 (MQ=60)
                                             CGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATC                                                 <  SRR4302534.240938/94‑1 (MQ=60)
                                             CGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATC                                                 <  SRR4302534.2960963/94‑1 (MQ=60)
                                               GTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAA                                               >  SRR4302534.3832670/1‑94 (MQ=60)
                                                 TATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAG                                             <  SRR4302534.3523932/94‑1 (MQ=60)
                                                 TATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAG                                             >  SRR4302534.4468549/1‑94 (MQ=60)
                                                  ATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGC                                            >  SRR4302534.3737045/1‑94 (MQ=60)
                                                  ATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGC                                            <  SRR4302534.4791377/94‑1 (MQ=60)
                                                   TACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCG                                           <  SRR4302534.3642737/94‑1 (MQ=60)
                                                   TACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCG                                           >  SRR4302534.2309661/1‑94 (MQ=60)
                                                    ACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGT                                          <  SRR4302534.3885072/94‑1 (MQ=60)
                                                      GTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTT                                        <  SRR4302534.690048/94‑1 (MQ=60)
                                                       TCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATCCTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTC                                       <  SRR4302534.3282167/94‑1 (MQ=60)
                                                       TCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTC                                       >  SRR4302534.297741/1‑94 (MQ=60)
                                                        CATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCA                                      >  SRR4302534.277066/1‑94 (MQ=60)
                                                         ATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAG                                     >  SRR4302534.5691140/1‑94 (MQ=60)
                                                         ATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAG                                     <  SRR4302534.2344639/94‑1 (MQ=60)
                                                         ATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAG                                     >  SRR4302534.5470128/1‑94 (MQ=60)
                                                         ATTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTCCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAG                                     <  SRR4302534.743180/94‑1 (MQ=60)
                                                          TTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGG                                    <  SRR4302534.473236/94‑1 (MQ=60)
                                                          TTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGG                                    <  SRR4302534.1164088/94‑1 (MQ=60)
                                                          TTAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGG                                    <  SRR4302534.5285148/94‑1 (MQ=60)
                                                           TAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGT                                   <  SRR4302534.4067967/94‑1 (MQ=60)
                                                           TAATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGT                                   <  SRR4302534.5000108/94‑1 (MQ=60)
                                                            AATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTC                                  <  SRR4302534.1348175/94‑1 (MQ=60)
                                                             ATACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCA                                 <  SRR4302534.3589555/94‑1 (MQ=60)
                                                               ACATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACC                               >  SRR4302534.1906631/1‑94 (MQ=60)
                                                                CATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCC                              >  SRR4302534.1831309/1‑94 (MQ=60)
                                                                 ATCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCA                             <  SRR4302534.3153439/94‑1 (MQ=60)
                                                                  TCAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCAT                            >  SRR4302534.228748/1‑94 (MQ=60)
                                                                   CAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATG                           >  SRR4302534.1701847/1‑94 (MQ=60)
                                                                   CAACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATG                           <  SRR4302534.4536224/94‑1 (MQ=60)
                                                                     ACTTAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCG                         <  SRR4302534.5561031/94‑1 (MQ=60)
                                                                        TAATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGC                      >  SRR4302534.5776487/1‑94 (MQ=60)
                                                                          ATGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCG                    <  SRR4302534.5139498/94‑1 (MQ=60)
                                                                           TGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGG                   >  SRR4302534.2543470/1‑94 (MQ=60)
                                                                           TGCGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGG                   >  SRR4302534.2353444/1‑94 (MQ=60)
                                                                             CGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGAC                 >  SRR4302534.886624/1‑94 (MQ=60)
                                                                             CGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGAC                 <  SRR4302534.5424452/94‑1 (MQ=60)
                                                                             CGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGAC                 <  SRR4302534.1775193/94‑1 (MQ=60)
                                                                             CGCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGAC                 >  SRR4302534.2072253/1‑94 (MQ=60)
                                                                              GCTGCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACG                >  SRR4302534.5481408/1‑94 (MQ=60)
                                                                                 GCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCAC             <  SRR4302534.4960331/94‑1 (MQ=60)
                                                                                 GCGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCAC             <  SRR4302534.486/94‑1 (MQ=60)
                                                                                  CGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACC            >  SRR4302534.3488716/1‑94 (MQ=60)
                                                                                  CGTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACC            >  SRR4302534.6201064/1‑94 (MQ=60)
                                                                                   GTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCT           <  SRR4302534.1414416/94‑1 (MQ=60)
                                                                                   GTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCT           >  SRR4302534.1919676/1‑94 (MQ=60)
                                                                                   GTCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCT           <  SRR4302534.5204312/94‑1 (MQ=60)
                                                                                    TCTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTT          >  SRR4302534.2424140/1‑94 (MQ=60)
                                                                                     CTGCGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTG         <  SRR4302534.4924028/94‑1 (MQ=60)
                                                                                        CGCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCA      <  SRR4302534.1952395/94‑1 (MQ=60)
                                                                                         GCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAA     <  SRR4302534.589185/94‑1 (MQ=60)
                                                                                         GCGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAA     >  SRR4302534.510276/1‑94 (MQ=60)
                                                                                          CGCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGTACGCACCTTGCCAAA    >  SRR4302534.3637163/1‑94 (MQ=60)
                                                                                           GCACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAAAT   >  SRR4302534.4857266/1‑94 (MQ=60)
                                                                                            CACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAAATT  <  SRR4302534.6585540/94‑1 (MQ=60)
                                                                                            |                                                                                             
TGGTTCTCTTAATCTTCTGATAACCGGATGGCGCGAAACGTCATCCGGTTATACGTCATTAATACATCAACTTAATGCGCTGCGTCTGCGCGTACTTCACATACTCATCTTCCGGGCAACAATCGCTCACCACAATATCAAAGCGTTTCAGGTCACCCATGCGCGCCGGACGCACCTTGCCAAATT  >  NC_000913/881141‑881326

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑