Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	981,066	A→T	D266V (GAC→GTC)	ycbB →	putative amidase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	981,066	0	A	T	100.0%	834.4 / NA	221	D266V (GAC→GTC)	ycbB	putative amidase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (109/112); total (109/112)

Only 100 of 228 total aligned reads displayed.

AACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGACGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAA  >  NC_000913/980976‑981155

aaCTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCg                                                                                         >  1:1244618/1‑93 (MQ=255)

aaCTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCg                                                                                         >  2:2738007/1‑93 (MQ=255)

    gACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCggggg                                                                                     >  1:4460073/1‑93 (MQ=255)

    gACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCggggg                                                                                     <  2:222929/93‑1 (MQ=255)

    gACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCggggg                                                                                     <  2:3848804/93‑1 (MQ=255)

          cAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGaa                                                                               >  1:4331379/1‑93 (MQ=255)

          cAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGaa                                                                               >  2:1354156/1‑93 (MQ=255)

           aaaGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGcaa                                                                              >  1:5600545/1‑93 (MQ=255)

            aaGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCgcaca                                                                             >  2:2578354/1‑89 (MQ=255)

            aaGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGaaaa                                                                             <  2:1570001/93‑1 (MQ=255)

             aGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAAt                                                                            >  1:190735/1‑93 (MQ=255)

             aGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAAt                                                                            <  1:5461091/93‑1 (MQ=255)

               cAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTa                                                                          <  2:3823379/93‑1 (MQ=255)

                aaCGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTAc                                                                         <  1:4414657/93‑1 (MQ=255)

                 aCGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTAct                                                                        >  2:2401749/1‑93 (MQ=255)

                 aCGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTAct                                                                        >  2:6429121/1‑93 (MQ=255)

                  cGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTActc                                                                       <  2:5168706/93‑1 (MQ=255)

                  cGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTActc                                                                       <  1:4905291/93‑1 (MQ=255)

                   gTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTActct                                                                      >  2:1406129/1‑93 (MQ=255)

                    ttGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTa                                                                     >  1:2979734/1‑93 (MQ=255)

                    ttGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTa                                                                     >  2:3707787/1‑93 (MQ=255)

                     tGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTAc                                                                    >  1:338720/1‑93 (MQ=255)

                      gcgcCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTAcc                                                                   <  2:4690401/93‑1 (MQ=255)

                      gcgcCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTAcc                                                                   <  1:4880861/93‑1 (MQ=255)

                      gcgcCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTAcc                                                                   <  2:568910/93‑1 (MQ=255)

                       cgcCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCt                                                                  <  1:4788851/93‑1 (MQ=255)

                       cgcCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCt                                                                  <  2:1011298/93‑1 (MQ=255)

                           cAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCg                                                              >  2:1069061/1‑93 (MQ=255)

                           cAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCg                                                              >  2:54279/1‑93 (MQ=255)

                           cAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCg                                                              >  1:4245493/1‑93 (MQ=255)

                            aGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGa                                                             >  1:1800497/1‑93 (MQ=255)

                             gggCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGAt                                                            >  2:2280498/1‑93 (MQ=255)

                             gggCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGAt                                                            >  1:5342710/1‑93 (MQ=255)

                              ggCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATg                                                           <  1:4603354/93‑1 (MQ=255)

                              ggCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATg                                                           >  1:3154599/1‑93 (MQ=255)

                              ggCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATg                                                           <  2:4296496/93‑1 (MQ=255)

                              ggCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATg                                                           >  2:1509392/1‑93 (MQ=255)

                               gCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGa                                                          >  1:3716525/1‑93 (MQ=255)

                                cAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGac                                                         <  1:3757560/93‑1 (MQ=255)

                                 aGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGaca                                                        <  2:2784/93‑1 (MQ=255)

                                 aGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGaca                                                        <  2:3583408/93‑1 (MQ=255)

                                  gTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGacac                                                       >  1:3032865/1‑93 (MQ=255)

                                  gTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGacac                                                       >  2:1526800/1‑93 (MQ=255)

                                    ggAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGc                                                     <  1:1405147/93‑1 (MQ=255)

                                     gAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGcc                                                    <  1:4977556/93‑1 (MQ=255)

                                       gTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCaa                                                  <  2:2092478/93‑1 (MQ=255)

                                       gTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCaa                                                  <  1:2088933/93‑1 (MQ=255)

                                       gTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCaa                                                  >  2:5951523/1‑93 (MQ=255)

                                        tAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAAc                                                 >  2:7555/1‑93 (MQ=255)

                                          acgacgTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTg                                               <  2:1447306/93‑1 (MQ=255)

                                            gacgTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGAc                                             <  1:5291516/93‑1 (MQ=255)

                                            gacgTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGAc                                             >  2:5857906/1‑93 (MQ=255)

                                            gacgTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGAc                                             >  2:4177170/1‑93 (MQ=255)

                                             acgTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGAcg                                            >  1:3469374/1‑93 (MQ=255)

                                               gTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGAcgcg                                          >  2:600329/1‑93 (MQ=255)

                                                tACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCgg                                         >  2:5592282/1‑93 (MQ=255)

                                                 aCCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGt                                        <  1:1009273/93‑1 (MQ=255)

                                                 aCCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGt                                        >  1:5689229/1‑93 (MQ=255)

                                                  ccGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTa                                       <  2:4912279/93‑1 (MQ=255)

                                                  ccGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTa                                       >  1:6436117/1‑93 (MQ=255)

                                                  ccGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTa                                       <  1:2420049/93‑1 (MQ=255)

                                                   cGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAg                                      >  2:2982851/1‑93 (MQ=255)

                                                    ggCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGt                                     >  2:2323001/1‑93 (MQ=255)

                                                     gCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTc                                    >  1:6156373/1‑93 (MQ=255)

                                                     gCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTc                                    <  1:4387678/93‑1 (MQ=255)

                                                      cGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCa                                   >  1:2641585/1‑93 (MQ=255)

                                                       gTTGCGCGAAATATTGGAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAg                                  >  1:2902154/1‑93 (MQ=255)

                                                       gTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAg                                  >  2:6457176/1‑93 (MQ=255)

                                                       gTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAg                                  <  2:1363973/93‑1 (MQ=255)

                                                         tGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGcc                                >  2:4526866/1‑93 (MQ=255)

                                                            gcgAAATATTGCAACGCACAGGCATGTTGGTTGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCAt                             <  2:1091919/93‑1 (MQ=255)

                                                            gcgAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCAt                             >  1:3619295/1‑93 (MQ=255)

                                                             cgAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATc                            <  2:5052277/93‑1 (MQ=255)

                                                             cgAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATc                            <  2:566227/93‑1 (MQ=255)

                                                             cgAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATc                            <  2:2840529/93‑1 (MQ=255)

                                                              gAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATcc                           <  2:3913663/93‑1 (MQ=255)

                                                              gAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATcc                           <  2:3127251/93‑1 (MQ=255)

                                                               aaaTATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCg                          >  1:1492016/1‑93 (MQ=255)

                                                               aaaTATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCg                          >  2:1651916/1‑93 (MQ=255)

                                                                 atatTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCt                        <  1:2480475/93‑1 (MQ=255)

                                                                 atatTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCt                        >  2:5015551/1‑93 (MQ=255)

                                                                  tatTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCtt                       >  1:1139689/1‑92 (MQ=255)

                                                                   atTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGt                      <  1:4066686/93‑1 (MQ=255)

                                                                    ttGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGtt                     <  2:3631480/93‑1 (MQ=255)

                                                                      gCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTAc                   <  2:4513390/93‑1 (MQ=255)

                                                                         aCGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGt                <  1:5784992/93‑1 (MQ=255)

                                                                         aCGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCGGTTACTGt                <  1:6301365/93‑1 (MQ=255)

                                                                           gCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTg              >  1:3417485/1‑93 (MQ=255)

                                                                           gCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTg              <  2:6279104/93‑1 (MQ=255)

                                                                            cacaGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGa             >  1:5970/1‑93 (MQ=255)

                                                                             acaGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGaa            >  1:750453/1‑93 (MQ=255)

                                                                               aGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAAc          >  2:3160121/1‑93 (MQ=255)

                                                                                ggCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAAca         <  2:5769358/93‑1 (MQ=255)

                                                                                ggCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAAca         >  1:1356699/1‑93 (MQ=255)

                                                                                  cATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAAcagc       >  1:1570459/1‑93 (MQ=255)

                                                                                   aTGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAAcagca      >  1:2265171/1‑93 (MQ=255)

                                                                                   aTGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAAcagca      >  1:3322520/1‑93 (MQ=255)

                                                                                   aTGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAAcagca      <  2:1819361/93‑1 (MQ=255)

                                                                                     gTTGGTCGCGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGa    <  2:4067309/93‑1 (MQ=255)

                                                                                      ttGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGaa   >  2:2164357/1‑93 (MQ=255)

AACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGACGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAA  >  NC_000913/980976‑981155

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 20 ≤` `ATCG/ATCG` `< 28 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

CCCAACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGACGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAACTAA  >  NC_000913/980973‑981159

CCCAACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGT                                                                                               >  SRR4302534.5902377/1‑94 (MQ=60)

 CCAACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTC                                                                                              <  SRR4302534.1644249/94‑1 (MQ=60)

 CCAACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTC                                                                                              <  SRR4302534.2750680/94‑1 (MQ=60)

 CCAACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTC                                                                                              >  SRR4302534.3799109/1‑94 (MQ=60)

  CAACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCG                                                                                             >  SRR4302534.1277418/1‑94 (MQ=60)

    ACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGG                                                                                           <  SRR4302534.3506063/94‑1 (MQ=60)

    ACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGG                                                                                           <  SRR4302534.249205/94‑1 (MQ=60)

     CTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGG                                                                                          <  SRR4302534.2982092/94‑1 (MQ=60)

      TGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGG                                                                                         >  SRR4302534.4580660/1‑94 (MQ=60)

      TGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGG                                                                                         <  SRR4302534.3429976/94‑1 (MQ=60)

      TGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGGAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGG                                                                                         >  SRR4302534.5270376/1‑94 (MQ=60)

       GACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGG                                                                                        <  SRR4302534.5257988/94‑1 (MQ=60)

         CCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCC                                                                                      <  SRR4302534.3641914/94‑1 (MQ=60)

          CGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCG                                                                                     <  SRR4302534.3370450/94‑1 (MQ=60)

           GGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGA                                                                                    >  SRR4302534.469886/1‑94 (MQ=60)

            GCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAA                                                                                   >  SRR4302534.4448511/1‑94 (MQ=60)

            GCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAA                                                                                   <  SRR4302534.2302993/94‑1 (MQ=60)

             CAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGCAA                                                                                  >  SRR4302534.5751999/1‑94 (MQ=60)

               AAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAAT                                                                                >  SRR4302534.195736/1‑94 (MQ=60)

               AAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAAT                                                                                <  SRR4302534.752421/94‑1 (MQ=60)

                AGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATT                                                                               <  SRR4302534.5608277/94‑1 (MQ=60)

                  CAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTAC                                                                             >  SRR4302534.1161175/1‑94 (MQ=60)

                   AACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACT                                                                            <  SRR4302534.4533823/94‑1 (MQ=60)

                    ACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTC                                                                           <  SRR4302534.1008500/94‑1 (MQ=60)

                    ACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTC                                                                           <  SRR4302534.491334/94‑1 (MQ=60)

                     CGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTGCTCT                                                                          <  SRR4302534.941957/94‑1 (MQ=60)

                     CGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCT                                                                          <  SRR4302534.5038263/94‑1 (MQ=60)

                      GTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTA                                                                         >  SRR4302534.3057708/1‑94 (MQ=60)

                      GTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTA                                                                         <  SRR4302534.245442/94‑1 (MQ=60)

                       TTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTAC                                                                        >  SRR4302534.347387/1‑94 (MQ=60)

                         GCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCT                                                                      <  SRR4302534.5013249/94‑1 (MQ=60)

                          CGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTG                                                                     <  SRR4302534.4918887/94‑1 (MQ=60)

                          CGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTG                                                                     <  SRR4302534.3090957/94‑1 (MQ=60)

                             CCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCG                                                                  <  SRR4302534.6135972/94‑1 (MQ=60)

                             CCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCG                                                                  >  SRR4302534.4359994/1‑94 (MQ=60)

                              CAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGA                                                                 <  SRR4302534.2098331/94‑1 (MQ=60)

                              CAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGA                                                                 >  SRR4302534.1847251/1‑94 (MQ=60)

                               AGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGAT                                                                >  SRR4302534.5486756/1‑94 (MQ=60)

                               AGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGAT                                                                >  SRR4302534.3614571/1‑94 (MQ=60)

                                GGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATG                                                               >  SRR4302534.3237681/1‑94 (MQ=60)

                                 GGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGA                                                              >  SRR4302534.3816449/1‑94 (MQ=60)

                                 GGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGA                                                              <  SRR4302534.4728283/94‑1 (MQ=60)

                                   CAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACA                                                            <  SRR4302534.2658421/94‑1 (MQ=60)

                                   CAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACA                                                            <  SRR4302534.3858460/94‑1 (MQ=60)

                                    AGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACAC                                                           >  SRR4302534.3940657/1‑94 (MQ=60)

                                    AGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACAC                                                           >  SRR4302534.3112398/1‑94 (MQ=60)

                                       GGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCC                                                        <  SRR4302534.1442101/94‑1 (MQ=60)

                                        GAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCA                                                       <  SRR4302534.5112289/94‑1 (MQ=60)

                                          GTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAAC                                                     <  SRR4302534.2143699/94‑1 (MQ=60)

                                            AACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTG                                                   >  SRR4302534.5014922/1‑94 (MQ=60)

                                            AACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTG                                                   >  SRR4302534.4513747/1‑94 (MQ=60)

                                            AACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTG                                                   >  SRR4302534.1591716/1‑94 (MQ=60)

                                              CGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGAC                                                 >  SRR4302534.6553809/1‑94 (MQ=60)

                                              CGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGAC                                                 >  SRR4302534.6091620/1‑94 (MQ=60)

                                              CGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATCACTCTACCTGGCGATGACACGCCAACTGAC                                                 >  SRR4302534.4486215/1‑94 (MQ=60)

                                               GACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACG                                                <  SRR4302534.5434327/94‑1 (MQ=60)

                                               GACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACG                                                >  SRR4302534.3562624/1‑94 (MQ=60)

                                                 CGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCG                                              >  SRR4302534.1498131/1‑94 (MQ=60)

                                                   TACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGT                                            >  SRR4302534.5843316/1‑94 (MQ=60)

                                                    TCCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTA                                           <  SRR4302534.2756665/94‑1 (MQ=60)

                                                    ACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTA                                           <  SRR4302534.1035201/94‑1 (MQ=60)

                                                    ACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTA                                           >  SRR4302534.6609592/1‑94 (MQ=60)

                                                    ACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTA                                           >  SRR4302534.4302284/1‑94 (MQ=60)

                                                     CCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCTGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAG                                          <  SRR4302534.5566316/94‑1 (MQ=60)

                                                     CCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAG                                          <  SRR4302534.3840765/94‑1 (MQ=60)

                                                     CCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAG                                          <  SRR4302534.1883712/94‑1 (MQ=60)

                                                     CCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAG                                          <  SRR4302534.2484404/94‑1 (MQ=60)

                                                     CCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAG                                          >  SRR4302534.3309398/1‑94 (MQ=60)

                                                      CGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGT                                         <  SRR4302534.1641508/94‑1 (MQ=60)

                                                       GGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTC                                        >  SRR4302534.6323837/1‑94 (MQ=60)

                                                       GGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTC                                        >  SRR4302534.2371327/1‑94 (MQ=60)

                                                        GCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCA                                       <  SRR4302534.387053/94‑1 (MQ=60)

                                                        GCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCA                                       >  SRR4302534.2711447/1‑94 (MQ=60)

                                                        GCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCA                                       <  SRR4302534.4505981/94‑1 (MQ=60)

                                                         CGTTGCGCGAAATATTGGAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAG                                      >  SRR4302534.2978313/1‑94 (MQ=60)

                                                         CGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAG                                      <  SRR4302534.5730612/94‑1 (MQ=60)

                                                              CGCGAAATATTGCAACGCACAGGGATGATGGTCGGGGGGCCGAAGACTACTCTACCTGGCGTTGACACGCCAACTGACGCGGTAGGCAGCCCAT                                 >  SRR4302534.656326/1‑94 (MQ=60)

                                                              CGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCAT                                 >  SRR4302534.3716602/1‑94 (MQ=60)

                                                              CGCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCAT                                 >  SRR4302534.1305081/1‑94 (MQ=60)

                                                               GCGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATC                                <  SRR4302534.1417825/94‑1 (MQ=60)

                                                                CGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCC                               <  SRR4302534.4955973/94‑1 (MQ=60)

                                                                CGAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCC                               >  SRR4302534.3047357/1‑94 (MQ=60)

                                                                 GAAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCG                              >  SRR4302534.1531259/1‑94 (MQ=60)

                                                                  AAATATTGTAACGCACAGGCATGGTGGTCGGGGGGCCGGAAATTACTCTACCTGGCGATGACACGCCAACTGACGCCGTAGTAAGCCCATCCGC                             <  SRR4302534.3179757/94‑1 (MQ=60)

                                                                  AAATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGC                             >  SRR4302534.6256118/1‑94 (MQ=60)

                                                                  AAATATTCCAACGCACAGGCATGTGGGTCGGGGGTCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGC                             <  SRR4302534.372810/94‑1 (MQ=60)

                                                                   AATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCT                            <  SRR4302534.3520267/94‑1 (MQ=60)

                                                                   AATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCT                            >  SRR4302534.5819252/1‑94 (MQ=60)

                                                                    ATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCACCTGCCGCGGTAGTCAGCCCATCCGCTG                           <  SRR4302534.1218981/94‑1 (MQ=60)

                                                                    ATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTT                           >  SRR4302534.1169509/1‑94 (MQ=60)

                                                                    ATATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTG                           <  SRR4302534.2546360/94‑1 (MQ=60)

                                                                      ATTGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTT                         <  SRR4302534.4175793/94‑1 (MQ=60)

                                                                        TGCAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTAC                       >  SRR4302534.3128148/1‑94 (MQ=60)

                                                                          CAACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTG                     >  SRR4302534.1954196/1‑94 (MQ=60)

                                                                            ACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTT                   <  SRR4302534.5941909/94‑1 (MQ=60)

                                                                            ACGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCGGTTACTGTT                   <  SRR4302534.6471775/94‑1 (MQ=60)

                                                                             CGCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTG                  >  SRR4302534.3509296/1‑94 (MQ=60)

                                                                              GCACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGA                 >  SRR4302534.6128/1‑94 (MQ=60)

                                                                               CACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCACCTGACGCGGTAGTCACCCCATCCGATGTTACTGTTGAA                >  SRR4302534.6063469/1‑94 (MQ=60)

                                                                               CACAGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAA                >  SRR4302534.769047/1‑94 (MQ=60)

                                                                                  AGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACA             >  SRR4302534.1392446/1‑94 (MQ=60)

                                                                                  AGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACA             >  SRR4302534.4534739/1‑94 (MQ=60)

                                                                                  AGGCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACA             >  SRR4302534.4910857/1‑94 (MQ=60)

                                                                                    GCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGC           <  SRR4302534.4398374/94‑1 (MQ=60)

                                                                                    GCATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGC           >  SRR4302534.1611585/1‑94 (MQ=60)

                                                                                     GATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCA          >  SRR4302534.3411378/1‑94 (MQ=60)

                                                                                     CATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCA          >  SRR4302534.2325248/1‑94 (MQ=60)

                                                                                     CATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACCCGGTAGTCAGCCAATCCGCTGTTACTGTTGAAACAGCA          >  SRR4302534.4511902/1‑94 (MQ=60)

                                                                                      ATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAG         <  SRR4302534.1410230/94‑1 (MQ=60)

                                                                                      ATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAG         >  SRR4302534.6468183/1‑94 (MQ=60)

                                                                                      ATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAG         >  SRR4302534.5448692/1‑94 (MQ=60)

                                                                                      ATGTTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAG         >  SRR4302534.5103088/1‑94 (MQ=60)

                                                                                         TTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAA      >  SRR4302534.5916379/1‑94 (MQ=60)

                                                                                         TTGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAA      <  SRR4302534.5767786/94‑1 (MQ=60)

                                                                                          TGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAAC     >  SRR4302534.5826649/1‑94 (MQ=60)

                                                                                          TGGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAAC     >  SRR4302534.1850643/1‑94 (MQ=60)

                                                                                           GGTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAACT    >  SRR4302534.4816371/1‑94 (MQ=60)

                                                                                            GTCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAACTA   >  SRR4302534.5610778/1‑94 (MQ=60)

                                                                                             TCGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAACTAA  <  SRR4302534.5920609/94‑1 (MQ=60)

CCCAACTGACCGGCAAAGCAACGTTGCGCCCAGGGCAGTGGAGTAACGACGTACCGGCGTTGCGCGAAATATTGCAACGCACAGGCATGTTGGACGGGGGGCCGAAAATTACTCTACCTGGCGATGACACGCCAACTGACGCGGTAGTCAGCCCATCCGCTGTTACTGTTGAAACAGCAGAAACTAA  >  NC_000913/980973‑981159

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`