Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,016,180 A→G I448T (ATA→ACA)  b0955 ← putative ATP‑dependent protease

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,016,1800AG100.0% 860.6 / NA 246I448T (ATA→ACA) b0955putative ATP‑dependent protease
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (124/122);  total (124/122)

Only 100 of 253 total aligned reads displayed.

AAACCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTATCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCTGT  >  NC_000913/1016090‑1016272
                                                                                          |                                                                                            
aaaCCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTc                                                                                            <  2:3474790/93‑1 (MQ=255)
 aaCCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCa                                                                                           <  2:1370338/93‑1 (MQ=255)
   ccaccGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAgg                                                                                         >  2:3536860/1‑93 (MQ=255)
    caccGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGGGCTTGTCAggg                                                                                        >  2:2619249/1‑93 (MQ=255)
    caccGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAggg                                                                                        <  1:2517839/93‑1 (MQ=255)
     accgaccgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGgc                                                                                       >  2:3938090/1‑93 (MQ=255)
      ccgaccgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGgcg                                                                                      >  2:3210333/1‑93 (MQ=255)
        gaccgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCa                                                                                    >  1:1477884/1‑93 (MQ=255)
        gaccgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCa                                                                                    >  2:6013756/1‑93 (MQ=255)
        gaccgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCa                                                                                    >  2:5720422/1‑93 (MQ=255)
         accgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCag                                                                                   >  1:5478187/1‑93 (MQ=255)
          ccgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATCCTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCaga                                                                                  <  1:3207502/93‑1 (MQ=255)
          ccgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCaga                                                                                  >  2:6339852/1‑93 (MQ=255)
          ccgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCaga                                                                                  >  1:5240596/1‑93 (MQ=255)
           cgGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCagag                                                                                 >  2:6192504/1‑93 (MQ=255)
            ggCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGt                                                                                >  1:5777129/1‑93 (MQ=255)
            ggCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGt                                                                                >  1:1172385/1‑93 (MQ=255)
            ggCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGt                                                                                >  2:5934144/1‑93 (MQ=255)
             gCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGtt                                                                               >  2:1727947/1‑93 (MQ=255)
              cTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTc                                                                              >  1:4846937/1‑93 (MQ=255)
               tGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCa                                                                             <  2:516892/93‑1 (MQ=255)
                 ggCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGc                                                                           >  1:5927487/1‑93 (MQ=255)
                 ggCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGc                                                                           >  1:4487321/1‑93 (MQ=255)
                     cgACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATc                                                                       <  1:215279/93‑1 (MQ=255)
                     cgACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATc                                                                       <  1:2537381/93‑1 (MQ=255)
                      gACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATAGGCGAGGGCGCTTGTTAGGGCGCATAGTTCAGCCATCg                                                                      >  1:6474600/1‑93 (MQ=255)
                       aCCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGa                                                                     >  1:2847075/1‑93 (MQ=255)
                       aCCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGa                                                                     >  2:2588639/1‑93 (MQ=255)
                       aCCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGa                                                                     <  1:1837859/93‑1 (MQ=255)
                        ccGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAg                                                                    >  1:2023873/1‑93 (MQ=255)
                        ccGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAg                                                                    <  2:165250/93‑1 (MQ=255)
                         cGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAgg                                                                   >  1:5669903/1‑93 (MQ=255)
                         cGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAgg                                                                   >  2:4709254/1‑93 (MQ=255)
                          gAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGc                                                                  <  1:3499723/93‑1 (MQ=255)
                           aaCTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCa                                                                 >  1:3422984/1‑93 (MQ=255)
                            aCTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCAc                                                                >  2:2725158/1‑93 (MQ=255)
                            aCTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCAc                                                                >  2:2133757/1‑93 (MQ=255)
                              tGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTa                                                              <  2:2344674/93‑1 (MQ=255)
                               gATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTAt                                                             >  2:6449244/1‑93 (MQ=255)
                                aTCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTAtc                                                            <  1:824407/93‑1 (MQ=255)
                                 tCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTAtct                                                           <  2:5437868/93‑1 (MQ=255)
                                 tCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTAtct                                                           <  1:3662602/93‑1 (MQ=255)
                                    aCTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCa                                                        >  1:4677152/1‑93 (MQ=255)
                                     cTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCAt                                                       >  2:2480316/1‑93 (MQ=255)
                                      tGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATc                                                      <  2:5773410/93‑1 (MQ=255)
                                      tGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATc                                                      <  1:4987653/93‑1 (MQ=255)
                                      tGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATc                                                      <  2:4359125/93‑1 (MQ=255)
                                         aCCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAAc                                                   >  2:759929/1‑93 (MQ=255)
                                          ccTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACt                                                  >  2:4679625/1‑93 (MQ=255)
                                          ccTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACt                                                  >  2:1178468/1‑93 (MQ=255)
                                          ccTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACt                                                  <  1:6066940/93‑1 (MQ=255)
                                           cTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACtt                                                 <  1:4250193/93‑1 (MQ=255)
                                           cTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACtt                                                 <  1:4154666/93‑1 (MQ=255)
                                              tgATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCAc                                              <  2:3271996/93‑1 (MQ=255)
                                               gATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACt                                             <  2:2070945/93‑1 (MQ=255)
                                                aTAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTg                                            >  1:3046380/1‑93 (MQ=255)
                                                aTAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTg                                            <  2:794528/93‑1 (MQ=255)
                                                  aGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTa                                          >  2:180134/1‑93 (MQ=255)
                                                   gCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTAt                                         <  1:68849/93‑1 (MQ=255)
                                                   gCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTAt                                         <  1:1409262/93‑1 (MQ=255)
                                                     gATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGa                                       >  2:4048126/1‑93 (MQ=255)
                                                     gATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGa                                       >  1:5574102/1‑93 (MQ=255)
                                                      aTACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTACACTGTATGAc                                      >  1:899831/1‑93 (MQ=255)
                                                       tACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACt                                     >  1:3260212/1‑93 (MQ=255)
                                                       tACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACt                                     >  2:285931/1‑93 (MQ=255)
                                                         ctctGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGc                                   <  1:2117211/93‑1 (MQ=255)
                                                         ctctGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGc                                   <  1:1270939/93‑1 (MQ=255)
                                                           ctGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTc                                 <  2:96349/93‑1 (MQ=255)
                                                           ctGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTc                                 >  1:6294565/1‑93 (MQ=255)
                                                           ctGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTc                                 <  1:1167847/93‑1 (MQ=255)
                                                              aTTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCaaa                              >  1:2050182/1‑93 (MQ=255)
                                                                tCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATg                            <  2:5251860/93‑1 (MQ=255)
                                                                 cACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGt                           <  2:1322989/93‑1 (MQ=255)
                                                                  aCCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTc                          <  2:117167/93‑1 (MQ=255)
                                                                  aCCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTc                          >  1:4738788/1‑93 (MQ=255)
                                                                    cGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAg                        <  1:3634254/93‑1 (MQ=255)
                                                                     ggCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGc                       <  1:508675/93‑1 (MQ=255)
                                                                       cacaTCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGa                     <  1:1572185/93‑1 (MQ=255)
                                                                        acaTCGGCGAGGGCTCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGAt                    <  1:1236950/93‑1 (MQ=255)
                                                                          aTCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGc                  <  2:4951264/93‑1 (MQ=255)
                                                                          aTCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGc                  <  2:4842751/93‑1 (MQ=255)
                                                                           tCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCt                 <  1:1400378/93‑1 (MQ=255)
                                                                            cGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTg                <  2:4982244/93‑1 (MQ=255)
                                                                            cGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTg                <  1:4437005/93‑1 (MQ=255)
                                                                              gCGAGGGCGCTTGTCAGGGTGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTgag              >  1:5309363/1‑93 (MQ=255)
                                                                              gCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTgag              >  2:1005595/1‑93 (MQ=255)
                                                                              gCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTgag              <  1:1665879/93‑1 (MQ=255)
                                                                              gCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTgag              >  2:5677482/1‑93 (MQ=255)
                                                                              gCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTgag              <  1:2682214/93‑1 (MQ=255)
                                                                               cGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTgaga             <  2:1905636/93‑1 (MQ=255)
                                                                               cGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTgaga             <  1:2774316/93‑1 (MQ=255)
                                                                                gAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGaa            >  2:625986/1‑93 (MQ=255)
                                                                                 aGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAg           >  2:5282907/1‑93 (MQ=255)
                                                                                 aGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAg           >  1:6183691/1‑93 (MQ=255)
                                                                                  gggCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAgg          <  1:3732091/93‑1 (MQ=255)
                                                                                  gggCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAgg          <  2:5088491/93‑1 (MQ=255)
                                                                                      gcTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGAt      >  2:2208784/1‑93 (MQ=255)
                                                                                      ccTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGAt      <  1:4821010/92‑1 (MQ=255)
                                                                                       cTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCTCTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATc     <  2:4523654/93‑1 (MQ=255)
                                                                                       cTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATc     >  1:943304/1‑93 (MQ=255)
                                                                                          |                                                                                            
AAACCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTATCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCTGT  >  NC_000913/1016090‑1016272

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
TTAAACCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTATCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCTGTT  >  NC_000913/1016088‑1016273
                                                                                            |                                                                                             
TTAAACCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGACGGCGCTTGT                                                                                              >  SRR4302534.820587/1‑94 (MQ=60)
 TAAACCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTC                                                                                             >  SRR4302534.4918857/1‑94 (MQ=60)
 TAAACCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTC                                                                                             >  SRR4302534.5440213/1‑94 (MQ=60)
  AAACCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCA                                                                                            <  SRR4302534.948302/94‑1 (MQ=60)
   AACCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAG                                                                                           >  SRR4302534.4646199/1‑94 (MQ=60)
      CACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGC                                                                                        <  SRR4302534.1240269/94‑1 (MQ=60)
      CACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGC                                                                                        <  SRR4302534.2584691/94‑1 (MQ=60)
         CGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCA                                                                                     >  SRR4302534.1516748/1‑94 (MQ=60)
          GACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAG                                                                                    >  SRR4302534.5625902/1‑94 (MQ=60)
          GACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAG                                                                                    >  SRR4302534.2900506/1‑94 (MQ=60)
          GACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAG                                                                                    >  SRR4302534.928306/1‑94 (MQ=60)
           ACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGA                                                                                   >  SRR4302534.5382099/1‑94 (MQ=60)
            CCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATCCTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAG                                                                                  <  SRR4302534.3292563/94‑1 (MQ=60)
            CCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAG                                                                                  <  SRR4302534.5195800/94‑1 (MQ=60)
             TGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGT                                                                                 >  SRR4302534.1203200/1‑94 (MQ=60)
             CGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCTGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGT                                                                                 >  SRR4302534.3348727/1‑94 (MQ=60)
             CGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGT                                                                                 >  SRR4302534.1490249/1‑94 (MQ=60)
             CGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGT                                                                                 >  SRR4302534.5933841/1‑94 (MQ=60)
             CGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCCGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGT                                                                                 >  SRR4302534.889367/1‑94 (MQ=60)
              GGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTT                                                                                <  SRR4302534.4691858/94‑1 (MQ=60)
              GGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTT                                                                                >  SRR4302534.120284/1‑94 (MQ=60)
              GGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTT                                                                                <  SRR4302534.3075252/94‑1 (MQ=60)
               GCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTC                                                                               >  SRR4302534.4978439/1‑94 (MQ=60)
               GCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTC                                                                               <  SRR4302534.5876519/94‑1 (MQ=60)
                 TGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAG                                                                             >  SRR4302534.330778/1‑94 (MQ=60)
                  TGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGC                                                                            >  SRR4302534.6088454/1‑94 (MQ=60)
                  GGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGC                                                                            >  SRR4302534.4608744/1‑94 (MQ=60)
                    GCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCA                                                                          <  SRR4302534.5373166/94‑1 (MQ=60)
                     CGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCAT                                                                         <  SRR4302534.4355810/94‑1 (MQ=60)
                       CGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCG                                                                       >  SRR4302534.5693434/1‑94 (MQ=60)
                       CGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCG                                                                       <  SRR4302534.2604707/94‑1 (MQ=60)
                       CGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCG                                                                       <  SRR4302534.220928/94‑1 (MQ=60)
                       CGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATAGGCGAGGGCGCTTGTTAGGGCGCATAGTTCAGCCATCG                                                                       >  SRR4302534.6649021/1‑94 (MQ=60)
                        GACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGA                                                                      >  SRR4302534.2921872/1‑94 (MQ=60)
                         ACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAG                                                                     >  SRR4302534.2076810/1‑94 (MQ=60)
                         ACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAG                                                                     <  SRR4302534.1885634/94‑1 (MQ=60)
                          CCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGG                                                                    >  SRR4302534.5823413/1‑94 (MQ=60)
                            GAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCA                                                                  <  SRR4302534.3593831/94‑1 (MQ=60)
                            GAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCA                                                                  >  SRR4302534.3514954/1‑94 (MQ=60)
                            GAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCA                                                                  >  SRR4302534.4595510/1‑94 (MQ=60)
                             AACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCAT                                                                 >  SRR4302534.5508076/1‑94 (MQ=60)
                             AACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCAC                                                                 >  SRR4302534.6026923/1‑94 (MQ=60)
                              ACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCTCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACT                                                                <  SRR4302534.1993697/94‑1 (MQ=60)
                              ACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACT                                                                <  SRR4302534.3757273/94‑1 (MQ=60)
                              ACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACT                                                                >  SRR4302534.5332567/1‑94 (MQ=60)
                                 GATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATC                                                             <  SRR4302534.6354924/94‑1 (MQ=60)
                                  ATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCT                                                            <  SRR4302534.1769677/94‑1 (MQ=60)
                                  ATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCT                                                            <  SRR4302534.845154/94‑1 (MQ=60)
                                   TCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTC                                                           <  SRR4302534.3761031/94‑1 (MQ=60)
                                    TGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCC                                                          >  SRR4302534.2662894/1‑94 (MQ=60)
                                    CGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCC                                                          >  SRR4302534.496638/1‑94 (MQ=60)
                                     GACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCA                                                         >  SRR4302534.4804123/1‑94 (MQ=60)
                                      ACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCAT                                                        >  SRR4302534.1018355/1‑94 (MQ=60)
                                      ACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCAT                                                        <  SRR4302534.6300974/94‑1 (MQ=60)
                                        TGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCA                                                      <  SRR4302534.5122603/94‑1 (MQ=60)
                                        TGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCA                                                      <  SRR4302534.6094344/94‑1 (MQ=60)
                                         GAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAA                                                     >  SRR4302534.2819510/1‑94 (MQ=60)
                                          AACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAAC                                                    <  SRR4302534.495988/94‑1 (MQ=60)
                                          AACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAAC                                                    >  SRR4302534.4385069/1‑94 (MQ=60)
                                            CCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTT                                                  <  SRR4302534.1698747/94‑1 (MQ=60)
                                            CCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTT                                                  <  SRR4302534.6231884/94‑1 (MQ=60)
                                            CCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTT                                                  <  SRR4302534.2671538/94‑1 (MQ=60)
                                             CTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTC                                                 <  SRR4302534.4266834/94‑1 (MQ=60)
                                             CTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTC                                                 <  SRR4302534.4364851/94‑1 (MQ=60)
                                              TGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCA                                                >  SRR4302534.4940069/1‑94 (MQ=60)
                                              TGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCA                                                >  SRR4302534.6428880/1‑94 (MQ=60)
                                               GTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCAC                                               >  SRR4302534.2140784/1‑94 (MQ=60)
                                                 GATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTG                                             <  SRR4302534.380249/94‑1 (MQ=60)
                                                 GATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTG                                             >  SRR4302534.3126284/1‑94 (MQ=60)
                                                     GCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATG                                         <  SRR4302534.1346315/94‑1 (MQ=60)
                                                     GCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATG                                         <  SRR4302534.2296651/94‑1 (MQ=60)
                                                     GCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATG                                         <  SRR4302534.1446339/94‑1 (MQ=60)
                                                     GCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATG                                         <  SRR4302534.4256142/94‑1 (MQ=60)
                                                     GCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATG                                         <  SRR4302534.70724/94‑1 (MQ=60)
                                                      CGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGA                                        >  SRR4302534.5724655/1‑94 (MQ=60)
                                                      CGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGA                                        >  SRR4302534.3690124/1‑94 (MQ=60)
                                                       GATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGAC                                       >  SRR4302534.2345356/1‑94 (MQ=60)
                                                       GATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTACACTGTATGAC                                       >  SRR4302534.922640/1‑94 (MQ=60)
                                                        ATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACT                                      <  SRR4302534.855452/94‑1 (MQ=60)
                                                        ATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACT                                      >  SRR4302534.3347025/1‑94 (MQ=60)
                                                        ATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACT                                      >  SRR4302534.824117/1‑94 (MQ=60)
                                                         TACTCTGATGCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTG                                     <  SRR4302534.451417/94‑1 (MQ=60)
                                                           CTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCT                                   >  SRR4302534.5916707/1‑94 (MQ=60)
                                                           CTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCT                                   <  SRR4302534.1609825/94‑1 (MQ=60)
                                                           CTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCT                                   <  SRR4302534.1304410/94‑1 (MQ=60)
                                                           CTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCT                                   >  SRR4302534.2111654/1‑94 (MQ=60)
                                                           CTCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCT                                   <  SRR4302534.2172924/94‑1 (MQ=60)
                                                            TCTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTC                                  >  SRR4302534.6464829/1‑94 (MQ=60)
                                                             CTGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCA                                 <  SRR4302534.1198521/94‑1 (MQ=60)
                                                              TGATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAA                                >  SRR4302534.3012998/1‑94 (MQ=60)
                                                               GATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAA                               >  SRR4302534.2103757/1‑94 (MQ=60)
                                                               GATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAA                               >  SRR4302534.5039883/1‑94 (MQ=60)
                                                               GATTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAA                               >  SRR4302534.3746177/1‑94 (MQ=60)
                                                                 TTCACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATG                             <  SRR4302534.3835189/94‑1 (MQ=60)
                                                                   CACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTC                           >  SRR4302534.4867442/1‑94 (MQ=60)
                                                                    ACCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCA                          <  SRR4302534.2064831/94‑1 (MQ=60)
                                                                     CCGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAG                         <  SRR4302534.3194991/94‑1 (MQ=60)
                                                                      CGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGC                        >  SRR4302534.5403578/1‑94 (MQ=60)
                                                                      CGGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGC                        <  SRR4302534.3731944/94‑1 (MQ=60)
                                                                       GGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCG                       <  SRR4302534.674338/94‑1 (MQ=60)
                                                                       GGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCG                       <  SRR4302534.521336/94‑1 (MQ=60)
                                                                       GGCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCG                       <  SRR4302534.1490301/94‑1 (MQ=60)
                                                                        GCACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGA                      <  SRR4302534.1229529/94‑1 (MQ=60)
                                                                         CACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGAT                     <  SRR4302534.1613350/94‑1 (MQ=60)
                                                                          ACATCGGCGAGGGCTCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATG                    <  SRR4302534.1269552/94‑1 (MQ=60)
                                                                          ACATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATG                    <  SRR4302534.1675378/94‑1 (MQ=60)
                                                                           CATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGTGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGC                   >  SRR4302534.1444538/1‑94 (MQ=60)
                                                                            ATCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCT                  <  SRR4302534.580355/94‑1 (MQ=60)
                                                                             TCGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTG                 <  SRR4302534.1437214/94‑1 (MQ=60)
                                                                              CGGCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGA                <  SRR4302534.4556817/94‑1 (MQ=60)
                                                                               GGCGAGGGCGCTTGTCAGGGTGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAG               >  SRR4302534.5452620/1‑94 (MQ=60)
                                                                                GCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGA              <  SRR4302534.1709237/94‑1 (MQ=60)
                                                                                GCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGA              >  SRR4302534.3545500/1‑94 (MQ=60)
                                                                                GCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGA              <  SRR4302534.2753116/94‑1 (MQ=60)
                                                                                GCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGA              <  SRR4302534.6175952/94‑1 (MQ=60)
                                                                                GCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGA              <  SRR4302534.2600794/94‑1 (MQ=60)
                                                                                GCGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGA              <  SRR4302534.2189984/94‑1 (MQ=60)
                                                                                 CGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAA             <  SRR4302534.2847316/94‑1 (MQ=60)
                                                                                 CGAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAA             >  SRR4302534.2839412/1‑94 (MQ=60)
                                                                                  GAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAG            >  SRR4302534.5646244/1‑94 (MQ=60)
                                                                                  GAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAG            >  SRR4302534.2096687/1‑94 (MQ=60)
                                                                                  GAGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAG            >  SRR4302534.6351995/1‑94 (MQ=60)
                                                                                   AGGGCTCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGG           <  SRR4302534.3537022/94‑1 (MQ=60)
                                                                                   AGGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGG           >  SRR4302534.6652017/1‑94 (MQ=60)
                                                                                    GGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGG          <  SRR4302534.5189624/94‑1 (MQ=60)
                                                                                    GGGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGG          <  SRR4302534.3832372/94‑1 (MQ=60)
                                                                                     GGCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGG         <  SRR4302534.137305/94‑1 (MQ=60)
                                                                                      GCGCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGA        >  SRR4302534.1283124/1‑94 (MQ=60)
                                                                                        GCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATC      >  SRR4302534.967301/1‑94 (MQ=60)
                                                                                        GCTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATC      <  SRR4302534.3315325/94‑1 (MQ=60)
                                                                                         CTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCT     >  SRR4302534.2000221/1‑94 (MQ=60)
                                                                                         CTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCT     >  SRR4302534.4709761/1‑94 (MQ=60)
                                                                                         CTTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCT     <  SRR4302534.4859610/94‑1 (MQ=60)
                                                                                          TTGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCTG    <  SRR4302534.4028302/94‑1 (MQ=60)
                                                                                           TGTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCTGT   <  SRR4302534.5436509/94‑1 (MQ=60)
                                                                                            GTCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCTGTT  <  SRR4302534.613106/94‑1 (MQ=60)
                                                                                            ATCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCTGTT  <  SRR4302534.6603948/94‑1 (MQ=60)
                                                                                            |                                                                                             
TTAAACCACCGACCGGCTGGGCGCGACCGAACTGATCGACTGAACCTGTGATAGCGATACTCTGATTCACCGGCACATCGGCGAGGGCGCTTATCAGGGCGCAGAGTTCAGCCATCGAGGCACTATCTCCATCAACTTCACTGTATGACTGCTCAAATGTCAGCGATGCTGAGAAGGGGATCTGTT  >  NC_000913/1016088‑1016273

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑