Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,056,041	A→G	E186E (GAA→GAG)	torT →	TorT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,056,041	0	A	G	100.0%	774.7 / NA	224	E186E (GAA→GAG)	torT	TorT
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (112/112); total (112/112)

Only 100 of 236 total aligned reads displayed.

ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT  >  NC_000913/1055951‑1056130

atatCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTACGGAGCTGGTCGAggg                                                                                         >  1:2786318/1‑93 (MQ=255)

atatCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAggg                                                                                         <  2:5182362/93‑1 (MQ=255)

  atCTGGTGCGATGGGCTCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGGCGGGGGCAGTAAGGAGATGGTCGAGGGtt                                                                                       <  2:4708787/93‑1 (MQ=255)

  atCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGtt                                                                                       <  1:1070579/93‑1 (MQ=255)

  atCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGtt                                                                                       <  1:889416/93‑1 (MQ=255)

   tCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGttt                                                                                      <  2:5618696/93‑1 (MQ=255)

    cTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGtttt                                                                                     <  1:290764/93‑1 (MQ=255)

          cAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCa                                                                               >  1:137176/1‑93 (MQ=255)

           aaTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAg                                                                              >  2:5533200/1‑93 (MQ=255)

           aaTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAg                                                                              >  2:4733874/1‑93 (MQ=255)

           aaTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGATTTCGCGCAg                                                                              >  2:2658251/1‑93 (MQ=255)

            aTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGc                                                                             >  1:3823475/1‑93 (MQ=255)

            aTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGc                                                                             >  2:5043040/1‑93 (MQ=255)

             tGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGcc                                                                            >  2:4164788/1‑93 (MQ=255)

             tGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGcc                                                                            >  2:6228261/1‑93 (MQ=255)

              gggCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCa                                                                           >  1:1523395/1‑93 (MQ=255)

               ggCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAt                                                                          <  1:5761342/93‑1 (MQ=255)

                gcgcACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAtt                                                                         <  2:2950031/93‑1 (MQ=255)

                gcgcACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCAtt                                                                         <  1:4526307/93‑1 (MQ=255)

                gcgcACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCAtt                                                                         >  1:35051/1‑93 (MQ=255)

                  gcACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGc                                                                       <  2:2268932/93‑1 (MQ=255)

                    aCGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCg                                                                     <  1:1222780/93‑1 (MQ=255)

                     cGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTAGCGCAGCCATTGCCgg                                                                    >  2:4598384/1‑93 (MQ=255)

                         aaaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGc                                                                >  1:1624912/1‑93 (MQ=255)

                         aaaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGc                                                                >  1:663863/1‑93 (MQ=255)

                          aaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGcc                                                               >  1:2446595/1‑93 (MQ=255)

                           aCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGccc                                                              <  2:1354887/93‑1 (MQ=255)

                            ccACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCg                                                             <  2:783920/93‑1 (MQ=255)

                             cACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCgg                                                            >  2:4451636/1‑93 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCggg                                                           >  1:1743042/1‑92 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCggg                                                           >  2:3606072/1‑92 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           <  2:859897/93‑1 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           <  1:1406646/93‑1 (MQ=255)

                                 gAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCg                                                        >  1:1889461/1‑93 (MQ=255)

                                 gAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCg                                                        <  1:5260514/93‑1 (MQ=255)

                                 gAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCg                                                        >  2:4273647/1‑93 (MQ=255)

                                   aTGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTa                                                      >  1:4113479/1‑93 (MQ=255)

                                   aTGTGCTGTGGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTa                                                      <  2:4857151/93‑1 (MQ=255)

                                    tgtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAt                                                     >  1:5107029/1‑93 (MQ=255)

                                    tgtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAt                                                     <  1:2727244/93‑1 (MQ=255)

                                    tgtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGAGGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAt                                                     <  1:1996561/93‑1 (MQ=255)

                                     gtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAtt                                                    <  2:4027105/93‑1 (MQ=255)

                                     gtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAtt                                                    <  1:5907363/93‑1 (MQ=255)

                                      tgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttg                                                   <  2:207115/93‑1 (MQ=255)

                                       tcTGTTGATGCCCGGCCCCGATAACGCCAGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgt                                                  <  2:310104/92‑1 (MQ=255)

                                         tGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgttg                                                >  1:942630/1‑93 (MQ=255)

                                         tGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgttg                                                >  1:242426/1‑93 (MQ=255)

                                         tGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGCTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgttg                                                >  2:4510643/1‑93 (MQ=255)

                                           ttGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGat                                              <  1:6392493/93‑1 (MQ=255)

                                           ttGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGat                                              <  2:3867507/93‑1 (MQ=255)

                                           gtGATGCCGGGACCCGATAGCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGGCATTGCCGGAAGCCCGGTGCGTATTGTTGat                                              <  1:6097461/92‑1 (MQ=255)

                                            tGATGCCCGGACCCGATAACGCCGGGTGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGata                                             <  1:6199394/93‑1 (MQ=255)

                                              aTGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAtt                                           <  2:2900983/93‑1 (MQ=255)

                                              aTGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAtt                                           <  1:3692105/93‑1 (MQ=255)

                                               tGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTg                                          >  2:5811931/1‑93 (MQ=255)

                                                    ggACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCtg                                     >  2:1482136/1‑92 (MQ=255)

                                                      aCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTgg                                   >  1:5845637/1‑93 (MQ=255)

                                                      aCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTgg                                   >  2:612566/1‑93 (MQ=255)

                                                        ccGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTg                                 >  2:1164093/1‑93 (MQ=255)

                                                         cGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGa                                >  2:4399941/1‑93 (MQ=255)

                                                          gATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAt                               >  2:3461991/1‑93 (MQ=255)

                                                           aTAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATa                              >  2:647189/1‑93 (MQ=255)

                                                           aTAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATa                              >  1:83629/1‑93 (MQ=255)

                                                            tAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATaa                             <  2:5658237/93‑1 (MQ=255)

                                                             aaCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAc                            >  2:6047870/1‑93 (MQ=255)

                                                             aaCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAc                            <  2:247187/93‑1 (MQ=255)

                                                             aaCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAc                            <  2:1993011/93‑1 (MQ=255)

                                                             aaCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAc                            >  1:5403760/1‑93 (MQ=255)

                                                                gCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGat                         >  1:1714179/1‑93 (MQ=255)

                                                                gCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGat                         <  2:1909795/93‑1 (MQ=255)

                                                                 ccGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGCTAACGata                        >  1:1152581/1‑93 (MQ=255)

                                                                  cGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGatat                       >  2:3709945/1‑93 (MQ=255)

                                                                  cGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGatat                       <  1:3622499/93‑1 (MQ=255)

                                                                   gggggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAtt                      <  2:5136999/93‑1 (MQ=255)

                                                                     gggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGa                    <  1:2956744/93‑1 (MQ=255)

                                                                      ggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGaa                   >  2:6303432/1‑93 (MQ=255)

                                                                       gCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGaaa                  <  1:4026297/93‑1 (MQ=255)

                                                                        cAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAt                 <  1:2984357/93‑1 (MQ=255)

                                                                         aGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATc                >  2:2195885/1‑93 (MQ=255)

                                                                          gTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATcc               >  1:3163012/1‑93 (MQ=255)

                                                                           tAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCa              >  2:1658267/1‑93 (MQ=255)

                                                                           tAAGGAGATGCTCGAGGGTTCTCGCGCAGCCATTGCAGGAAGCCCGTTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCa              <  1:4862945/93‑1 (MQ=255)

                                                                            aaGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAg             >  1:3147163/1‑93 (MQ=255)

                                                                            aaGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAg             >  2:5407800/1‑93 (MQ=255)

                                                                            aaGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAg             <  1:4721750/93‑1 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            >  1:2699284/1‑93 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            <  1:5069701/93‑1 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            >  1:1001141/1‑93 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            <  1:2112566/93‑1 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            >  2:4209349/1‑93 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            >  1:5869226/1‑93 (MQ=255)

                                                                               gagaTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGt          >  2:3315209/1‑93 (MQ=255)

                                                                                   tGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAcc      <  2:6003398/93‑1 (MQ=255)

                                                                                   tGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAcc      >  1:5700281/1‑93 (MQ=255)

                                                                                   tGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAcc      <  1:5556854/93‑1 (MQ=255)

                                                                                    ggTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCt     <  1:2527919/93‑1 (MQ=255)

                                                                                     gTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTg    >  1:5717170/1‑93 (MQ=255)

                                                                                      tCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGt   <  1:1315291/93‑1 (MQ=255)

                                                                                      tCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGt   <  2:1820649/93‑1 (MQ=255)

                                                                                       cGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGtt  <  2:4351159/93‑1 (MQ=255)

ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT  >  NC_000913/1055951‑1056130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC  >  NC_000913/1055948‑1056132

GCGATATCTGGTGCAATGGTCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAG                                                                                             <  SRR4302534.708770/94‑1 (MQ=60)

GCGATATCTGGTGCAATGGGTGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAG                                                                                             <  SRR4302534.1361013/94‑1 (MQ=60)

  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTACGGAGCTGGTCGAGGG                                                                                           >  SRR4302534.2859600/1‑94 (MQ=60)

  GATATCTGGTGCAATGGGCGCACGGGAAAACACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                           >  SRR4302534.1104657/1‑94 (MQ=60)

   ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGT                                                                                          <  SRR4302534.1521851/94‑1 (MQ=60)

   ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGT                                                                                          <  SRR4302534.1410041/94‑1 (MQ=60)

     ATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTT                                                                                        <  SRR4302534.1098350/94‑1 (MQ=60)

     ATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTT                                                                                        <  SRR4302534.911944/94‑1 (MQ=60)

     ATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTT                                                                                        >  SRR4302534.6613567/1‑94 (MQ=60)

       CTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTC                                                                                      <  SRR4302534.298284/94‑1 (MQ=60)

       CTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTC                                                                                      <  SRR4302534.2508258/94‑1 (MQ=60)

        TGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCG                                                                                     <  SRR4302534.712356/94‑1 (MQ=60)

        TGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCG                                                                                     <  SRR4302534.3512546/94‑1 (MQ=60)

        TGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCG                                                                                     >  SRR4302534.6055604/1‑94 (MQ=60)

        TGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCG                                                                                     >  SRR4302534.1737165/1‑94 (MQ=60)

          GTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCG                                                                                   <  SRR4302534.1185648/94‑1 (MQ=60)

            GCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCA                                                                                 >  SRR4302534.140765/1‑94 (MQ=60)

             CAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAG                                                                                >  SRR4302534.5927180/1‑94 (MQ=60)

              AATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCTGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGC                                                                               <  SRR4302534.5192569/94‑1 (MQ=60)

              AATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGC                                                                               >  SRR4302534.3926185/1‑94 (MQ=60)

              AATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGC                                                                               >  SRR4302534.592981/1‑94 (MQ=60)

                TGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCA                                                                             >  SRR4302534.1563398/1‑94 (MQ=60)

                  GGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATT                                                                           <  SRR4302534.5917635/94‑1 (MQ=60)

                  GGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATT                                                                           >  SRR4302534.35974/1‑94 (MQ=60)

                   GCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTG                                                                          <  SRR4302534.4648929/94‑1 (MQ=60)

                     GCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCC                                                                        <  SRR4302534.2806229/94‑1 (MQ=60)

                       ACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGG                                                                      <  SRR4302534.5371765/94‑1 (MQ=60)

                       ACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGG                                                                      <  SRR4302534.1254976/94‑1 (MQ=60)

                       ACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGG                                                                      >  SRR4302534.879693/1‑94 (MQ=60)

                          GTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATCGCCGGAAG                                                                   <  SRR4302534.6300566/94‑1 (MQ=60)

                           TAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGC                                                                  >  SRR4302534.1667307/1‑94 (MQ=60)

                           TAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGC                                                                  >  SRR4302534.680024/1‑94 (MQ=60)

                            AAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCC                                                                 <  SRR4302534.6246326/94‑1 (MQ=60)

                            AAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCC                                                                 >  SRR4302534.2511617/1‑94 (MQ=60)

                            AAACAACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGTC                                                                 >  SRR4302534.6142643/1‑94 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                >  SRR4302534.1971749/1‑94 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                >  SRR4302534.1065792/1‑94 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGGAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                >  SRR4302534.1893097/1‑94 (MQ=60)

                                CACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGT                                                             <  SRR4302534.6482523/94‑1 (MQ=60)

                                CACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGG                                                             >  SRR4302534.1788282/1‑94 (MQ=60)

                                 ACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTG                                                            >  SRR4302534.3144640/1‑94 (MQ=60)

                                 ACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTG                                                            <  SRR4302534.1443642/94‑1 (MQ=60)

                                 ACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGTG                                                            >  SRR4302534.3019441/1‑94 (MQ=60)

                                   TGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCG                                                          >  SRR4302534.1938733/1‑94 (MQ=60)

                                    GAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGT                                                         <  SRR4302534.5402649/94‑1 (MQ=60)

                                     AATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTA                                                        >  SRR4302534.2683277/1‑94 (MQ=60)

                                     AATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTA                                                        >  SRR4302534.4224134/1‑94 (MQ=60)

                                      ATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAT                                                       >  SRR4302534.5244845/1‑94 (MQ=60)

                                       TGTGCTGTTGATGCCCGGACCCGATAGCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATT                                                      <  SRR4302534.21903/94‑1 (MQ=60)

                                       TGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATT                                                      <  SRR4302534.2799174/94‑1 (MQ=60)

                                       TGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGAGGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATT                                                      <  SRR4302534.2048848/94‑1 (MQ=60)

                                        GTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTG                                                     <  SRR4302534.4163853/94‑1 (MQ=60)

                                        GTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTG                                                     <  SRR4302534.6067766/94‑1 (MQ=60)

                                           TTGTTGATGCCCGGACCCGATAACGCGGGGGGCAGTAAGGAGATGCTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTG                                                  <  SRR4302534.5860068/94‑1 (MQ=60)

                                           CTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTG                                                  >  SRR4302534.966607/1‑94 (MQ=60)

                                           CTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTG                                                  >  SRR4302534.248769/1‑94 (MQ=60)

                                             GTTGATGCCCGGACCCGATAACGCAGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGAT                                                <  SRR4302534.6007570/94‑1 (MQ=60)

                                              TTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATA                                               <  SRR4302534.6565147/94‑1 (MQ=60)

                                              GTGATGCCGGGACCCGATAGCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGGCATTGCCGGAAGCCCGGTGCGTATTGTTGATA                                               <  SRR4302534.6263280/94‑1 (MQ=60)

                                               TGATGCCCGGACCCGATAACGCCGGGTGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAT                                              <  SRR4302534.6368032/94‑1 (MQ=60)

                                               TGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAT                                              >  SRR4302534.242576/1‑94 (MQ=60)

                                               TGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAT                                              <  SRR4302534.2923727/94‑1 (MQ=60)

                                                GATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATT                                             <  SRR4302534.2798862/94‑1 (MQ=60)

                                                GATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATT                                             >  SRR4302534.1421306/1‑94 (MQ=60)

                                                 ATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTG                                            <  SRR4302534.3791384/94‑1 (MQ=60)

                                                      CGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTT                                       >  SRR4302534.2618701/1‑94 (MQ=60)

                                                      CGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTT                                       >  SRR4302534.2911399/1‑94 (MQ=60)

                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                      >  SRR4302534.4632280/1‑94 (MQ=60)

                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                      >  SRR4302534.5786902/1‑94 (MQ=60)

                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                      >  SRR4302534.3864260/1‑94 (MQ=60)

                                                        GACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGG                                     >  SRR4302534.6004343/1‑94 (MQ=60)

                                                            CGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAT                                 >  SRR4302534.3035873/1‑94 (MQ=60)

                                                            CGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAT                                 >  SRR4302534.6605415/1‑94 (MQ=60)

                                                             GATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATA                                >  SRR4302534.85866/1‑94 (MQ=60)

                                                              ATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAA                               <  SRR4302534.1242255/94‑1 (MQ=60)

                                                              ATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAA                               <  SRR4302534.5227238/94‑1 (MQ=60)

                                                               TAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAC                              >  SRR4302534.5549191/1‑94 (MQ=60)

                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACG                             >  SRR4302534.2046376/1‑94 (MQ=60)

                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATGGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACG                             <  SRR4302534.1565908/94‑1 (MQ=60)

                                                                 ACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGA                            <  SRR4302534.916071/94‑1 (MQ=60)

                                                                  CGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGAT                           >  SRR4302534.1758712/1‑94 (MQ=60)

                                                                  CGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGAT                           <  SRR4302534.4864336/94‑1 (MQ=60)

                                                                  CGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGAT                           <  SRR4302534.3766538/94‑1 (MQ=60)

                                                                   GCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGCTAACGATA                          >  SRR4302534.1182797/1‑94 (MQ=60)

                                                                   GCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATA                          <  SRR4302534.5654402/94‑1 (MQ=60)

                                                                    CCGGGGGCAGTCAGGAGATGGTCCAGGGCTTTCGCGCAGCCATTGCCGGAAGCCCGGAGCGTATTGTTGATATTGCGCTTGGTGATAACGATAT                         >  SRR4302534.3178232/1‑94 (MQ=60)

                                                                    CCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAT                         <  SRR4302534.3843671/94‑1 (MQ=60)

                                                                     CGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATT                        <  SRR4302534.3719887/94‑1 (MQ=60)

                                                                     CGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATT                        <  SRR4302534.868017/94‑1 (MQ=60)

                                                                       TGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGA                      >  SRR4302534.1385211/1‑94 (MQ=60)

                                                                       GGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGA                      <  SRR4302534.3243207/94‑1 (MQ=60)

                                                                        GGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAA                     <  SRR4302534.3034236/94‑1 (MQ=60)

                                                                          GCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAT                   <  SRR4302534.4134262/94‑1 (MQ=60)

                                                                          GCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAT                   <  SRR4302534.5179221/94‑1 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                  >  SRR4302534.444436/1‑94 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                  <  SRR4302534.3062419/94‑1 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                  >  SRR4302534.2148601/1‑94 (MQ=60)

                                                                            AGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCC                 >  SRR4302534.3246375/1‑94 (MQ=60)

                                                                             GTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCA                >  SRR4302534.5754727/1‑94 (MQ=60)

                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG               <  SRR4302534.4111428/94‑1 (MQ=60)

                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG               <  SRR4302534.465550/94‑1 (MQ=60)

                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG               >  SRR4302534.3325467/1‑94 (MQ=60)

                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG               >  SRR4302534.3229943/1‑94 (MQ=60)

                                                                              TAAGGAGATGCTCGAGGGTTCTCGCGCAGCCATTGCAGGAAGCCCGTTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG               <  SRR4302534.4994868/94‑1 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC              >  SRR4302534.1026802/1‑94 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC              >  SRR4302534.6028581/1‑94 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC              <  SRR4302534.3712238/94‑1 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC              >  SRR4302534.2770591/1‑94 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC              <  SRR4302534.4849991/94‑1 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC              >  SRR4302534.5422852/1‑94 (MQ=60)

                                                                                AGGAGCTGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGCGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGATATCCAGCG             >  SRR4302534.2521029/1‑94 (MQ=60)

                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCG             <  SRR4302534.2168129/94‑1 (MQ=60)

                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCG             <  SRR4302534.5206570/94‑1 (MQ=60)

                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCG             >  SRR4302534.1348032/1‑94 (MQ=60)

                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGACCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCG             >  SRR4302534.588833/1‑94 (MQ=60)

                                                                                 GGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGT            >  SRR4302534.1780384/1‑94 (MQ=60)

                                                                                     ATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACC        >  SRR4302534.5854695/1‑94 (MQ=60)

                                                                                     ATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACC        <  SRR4302534.5543631/94‑1 (MQ=60)

                                                                                      TGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCT       <  SRR4302534.5706878/94‑1 (MQ=60)

                                                                                      TGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCT       <  SRR4302534.1717843/94‑1 (MQ=60)

                                                                                       GGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTG      <  SRR4302534.2595001/94‑1 (MQ=60)

                                                                                       GGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTG      >  SRR4302534.5872071/1‑94 (MQ=60)

                                                                                         TCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT    <  SRR4302534.1349968/94‑1 (MQ=60)

                                                                                          CGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTG   >  SRR4302534.5980309/1‑94 (MQ=60)

                                                                                          CGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTG   >  SRR4302534.5431145/1‑94 (MQ=60)

                                                                                          CGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTG   >  SRR4302534.4548332/1‑94 (MQ=60)

                                                                                           GAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC  >  SRR4302534.129089/1‑94 (MQ=60)

                                                                                           GAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC  >  SRR4302534.2739304/1‑94 (MQ=60)

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC  >  NC_000913/1055948‑1056132

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 7 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`