Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,056,041	A→G	E186E (GAA→GAG)	torT →	TorT

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,056,041	0	A	G	100.0%	847.4 / NA	250	E186E (GAA→GAG)	torT	TorT
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (138/112); total (138/112)

Only 100 of 274 total aligned reads displayed.

ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT  >  NC_000913/1055951‑1056130

atatCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAggg                                                                                         >  2:6566042/1‑93 (MQ=255)

atatCTGGTGCAATGGGCGCACGGCAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGCGCAGTAAGGAGGTGGTCGAggg                                                                                         >  1:6614773/1‑93 (MQ=255)

   tCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGttt                                                                                      <  2:4836315/93‑1 (MQ=255)

    cTGGTGCAATGGGCGCACAGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGtttt                                                                                     <  1:2789697/93‑1 (MQ=255)

      ggTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGtttttc                                                                                   >  2:2482589/1‑91 (MQ=255)

         gCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGGCGAGGGTTTTcgtga                                                                                >  1:2585102/1‑90 (MQ=255)

          gaaTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCa                                                                               <  1:2364386/92‑1 (MQ=255)

          cAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCa                                                                               <  2:7016805/93‑1 (MQ=255)

           aaTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAg                                                                              >  2:1937580/1‑93 (MQ=255)

            aTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGc                                                                             >  1:3098813/1‑93 (MQ=255)

            aTGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCAATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGc                                                                             >  1:1319281/1‑93 (MQ=255)

                   cACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGcc                                                                      <  2:4610889/93‑1 (MQ=255)

                   cACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGCTTTCGCGCAGCCATTGcc                                                                      >  1:6112905/1‑93 (MQ=255)

                    aCGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCg                                                                     >  2:6688444/1‑93 (MQ=255)

                    aCGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCg                                                                     >  1:3419664/1‑93 (MQ=255)

                     cGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCgg                                                                    >  2:5947252/1‑93 (MQ=255)

                     cGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCgg                                                                    <  2:8225874/93‑1 (MQ=255)

                     cGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCgg                                                                    >  1:2502339/1‑93 (MQ=255)

                      ggTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGa                                                                   >  1:208569/1‑93 (MQ=255)

                       gTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGaa                                                                  >  2:8122738/1‑93 (MQ=255)

                         aaaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGc                                                                <  1:108630/93‑1 (MQ=255)

                         aaaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGc                                                                >  2:287452/1‑93 (MQ=255)

                          aaCCACTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGcc                                                               >  1:4084769/1‑93 (MQ=255)

                          aaCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGcc                                                               >  1:1139855/1‑93 (MQ=255)

                           aCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGccc                                                              >  2:8037934/1‑93 (MQ=255)

                           aCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGccc                                                              <  2:5726478/93‑1 (MQ=255)

                           aCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGccc                                                              <  1:4248048/93‑1 (MQ=255)

                           aCCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGccc                                                              >  1:1938138/1‑93 (MQ=255)

                            ccACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCg                                                             >  2:7171381/1‑93 (MQ=255)

                            ccACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCg                                                             >  1:7673244/1‑93 (MQ=255)

                              aCTGAATGTGCTTTTGATGCCGGGACCCGATAACGCCGGGGTCAGTAAGGAGATGGTCGAGTGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           <  1:6431820/93‑1 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           <  2:5373971/93‑1 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           >  1:6058679/1‑93 (MQ=255)

                              aCTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGt                                                           >  1:6305039/1‑93 (MQ=255)

                               cTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTg                                                          <  1:8723844/93‑1 (MQ=255)

                                tGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGc                                                         <  2:6189928/93‑1 (MQ=255)

                                tGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGc                                                         <  1:7006155/93‑1 (MQ=255)

                                  aacgtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTCTTTGCGCAACCATTGCCGGAAACCCGGTGCGt                                                       >  2:7565068/4‑93 (MQ=255)

                                   aTGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTa                                                      >  1:5154259/1‑93 (MQ=255)

                                     gtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAtt                                                    >  1:7537510/1‑93 (MQ=255)

                                     gtgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATGGCCGGAAGCCCGGTGCGTAtt                                                    >  1:7505245/1‑93 (MQ=255)

                                      tgCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttg                                                   >  1:4665476/1‑93 (MQ=255)

                                       gCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgt                                                  <  2:2260991/93‑1 (MQ=255)

                                        cTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgtt                                                 >  2:4578107/1‑93 (MQ=255)

                                        cTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgtt                                                 <  2:6397606/93‑1 (MQ=255)

                                        cTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgtt                                                 >  1:170444/1‑93 (MQ=255)

                                         tGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAttgttg                                                >  2:1154968/1‑93 (MQ=255)

                                           ttGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGat                                              <  1:704320/93‑1 (MQ=255)

                                             gATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGatat                                            <  1:5210431/93‑1 (MQ=255)

                                             gATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGatat                                            >  2:142944/1‑93 (MQ=255)

                                              aTGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAtt                                           >  2:4868229/1‑93 (MQ=255)

                                               tGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGATTTCGCGCAGCCATTGCCGGAAGACCGGTGCGTATTGTTGATATTg                                          >  2:5179811/1‑93 (MQ=255)

                                                 cccGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgcg                                        >  2:326450/1‑93 (MQ=255)

                                                  ccGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgcgc                                       >  1:7932966/1‑93 (MQ=255)

                                                  ccGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgcgc                                       >  1:6395873/1‑93 (MQ=255)

                                                  ccGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTgcgc                                       >  2:5905311/1‑93 (MQ=255)

                                                   cGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCt                                      <  2:5301853/93‑1 (MQ=255)

                                                   cGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCt                                      <  2:4063450/93‑1 (MQ=255)

                                                    cgACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCtt                                     <  2:262569/92‑1 (MQ=255)

                                                      aCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTgg                                   <  1:812600/93‑1 (MQ=255)

                                                      aCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCGTgg                                   >  2:1746905/1‑93 (MQ=255)

                                                       cccGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGt                                  <  1:6802164/93‑1 (MQ=255)

                                                       cccGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGt                                  <  1:3240767/93‑1 (MQ=255)

                                                        ccGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGGGCGTATTGTTGATATTGCGCTTGGTg                                 >  1:450564/1‑93 (MQ=255)

                                                          gATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGAt                               >  2:6324689/1‑93 (MQ=255)

                                                            tAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATaa                             <  1:1001564/93‑1 (MQ=255)

                                                             aaCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAc                            >  2:8499277/1‑93 (MQ=255)

                                                             aaCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAc                            <  1:3748292/93‑1 (MQ=255)

                                                              aCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACg                           <  2:4938961/93‑1 (MQ=255)

                                                              aCGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACg                           <  1:7238865/93‑1 (MQ=255)

                                                              aCGCCGGGGGCAGTAAGGAGATGGTCGAGGGGTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACg                           >  2:5163706/1‑93 (MQ=255)

                                                               cGCTGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGa                          <  1:2746680/93‑1 (MQ=255)

                                                                gCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGCATTGTTGATATTGCGCTTGGTGATAACGat                         <  1:8659052/93‑1 (MQ=255)

                                                                 ccGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGata                        <  1:1504834/93‑1 (MQ=255)

                                                                 ccGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGata                        >  2:5221773/1‑93 (MQ=255)

                                                                  cGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGGTAACGatat                       <  2:6831386/93‑1 (MQ=255)

                                                                  cGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGatat                       >  1:4814386/1‑93 (MQ=255)

                                                                  cGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGatat                       <  1:8506956/93‑1 (MQ=255)

                                                                   gggggCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAtt                      <  2:128386/93‑1 (MQ=255)

                                                                   cgggtCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAtt                      <  2:3420264/92‑1 (MQ=255)

                                                                       gCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATCTTGCGCTTGGTGATAACGATATTGaaa                  >  1:4424994/1‑93 (MQ=255)

                                                                       gCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGaaa                  <  2:3735734/93‑1 (MQ=255)

                                                                       gCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGaaa                  <  1:1031609/93‑1 (MQ=255)

                                                                          gTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATcc               >  2:690632/1‑93 (MQ=255)

                                                                           tAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCa              <  2:1161563/93‑1 (MQ=255)

                                                                           tAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCa              <  2:5242690/93‑1 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            >  2:1779599/1‑93 (MQ=255)

                                                                             aGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGc            <  1:5795633/93‑1 (MQ=255)

                                                                              ggAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCg           <  2:4447485/93‑1 (MQ=255)

                                                                              ggAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCg           >  2:7479364/1‑93 (MQ=255)

                                                                              ggAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCg           >  1:5509493/1‑93 (MQ=255)

                                                                                 gaTGGTCGAGGGTTTGCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATACAGCGTac        >  2:8711778/1‑92 (MQ=255)

                                                                                   tGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAcc      >  2:4329608/1‑93 (MQ=255)

                                                                                   tGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAcc      >  1:4072923/1‑93 (MQ=255)

                                                                                    ggTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCt     <  2:2539606/93‑1 (MQ=255)

                                                                                    ggTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCt     <  2:7767260/93‑1 (MQ=255)

                                                                                    ggTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCt     <  1:5973025/93‑1 (MQ=255)

                                                                                    ggTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCt     <  2:8442985/93‑1 (MQ=255)

                                                                                     gTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTg    >  1:6224233/1‑93 (MQ=255)

                                                                                       cGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGtt  <  2:5456193/93‑1 (MQ=255)

ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTT  >  NC_000913/1055951‑1056130

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 17 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCAG  >  NC_000913/1055948‑1056134

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAG                                                                                               <  SRR4302541.8329790/94‑1 (MQ=60)

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAG                                                                                               >  SRR4302541.3007543/1‑94 (MQ=60)

 CGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCTGTAAGGAGATGGTCGAGG                                                                                              >  SRR4302541.7610597/1‑94 (MQ=60)

 CGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGG                                                                                              >  SRR4302541.7708352/1‑94 (MQ=60)

 CGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGG                                                                                              >  SRR4302541.6642903/1‑94 (MQ=60)

  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATACCGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                             >  SRR4302541.4117848/1‑94 (MQ=60)

  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                             <  SRR4302541.4835643/94‑1 (MQ=60)

  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                             <  SRR4302541.4123478/94‑1 (MQ=60)

  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                             >  SRR4302541.4117846/1‑94 (MQ=60)

  GATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGG                                                                                             <  SRR4302541.3534475/94‑1 (MQ=60)

  GATATCTGGTGCAATGGGCGCACGGCAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGCGCAGTAAGGAGGTGGTCGAGGG                                                                                             >  SRR4302541.6682573/1‑94 (MQ=60)

   ATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGT                                                                                            >  SRR4302541.1439478/1‑94 (MQ=60)

   ATATCTGGGGCAATGGGCGCACGGTAAACCCCGGAATGTGCGGTTAATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGT                                                                                            <  SRR4302541.1237973/94‑1 (MQ=60)

     ATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTT                                                                                          <  SRR4302541.8194682/94‑1 (MQ=60)

       CTGGTGCAATGGGCGCACAGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTC                                                                                        <  SRR4302541.2817855/94‑1 (MQ=60)

          GTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCG                                                                                     >  SRR4302541.3960132/1‑94 (MQ=60)

           TGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGGCGAGGGTTTTCGtga                                                                                    >  SRR4302541.2611007/1‑91 (MQ=60)

           TGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGGGATGGTCGAGGGTTTTCGCGC                                                                                    >  SRR4302541.318433/1‑94 (MQ=60)

            GCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCA                                                                                   >  SRR4302541.6059567/1‑94 (MQ=60)

            GCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCA                                                                                   >  SRR4302541.6059566/1‑94 (MQ=60)

             GAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAG                                                                                  <  SRR4302541.2387438/94‑1 (MQ=60)

             CAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAG                                                                                  >  SRR4302541.487963/1‑94 (MQ=60)

             CAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAG                                                                                  <  SRR4302541.2387439/94‑1 (MQ=60)

              AATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGC                                                                                 <  SRR4302541.7428742/94‑1 (MQ=60)

              AATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGC                                                                                 >  SRR4302541.3130222/1‑94 (MQ=60)

              AATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCAATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGC                                                                                 >  SRR4302541.1332260/1‑94 (MQ=60)

               ATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCC                                                                                >  SRR4302541.4770422/1‑94 (MQ=60)

                 GGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGNCGAGGGTTTTCGCNCAGCNAN                                                                              >  SRR4302541.6529049/1‑94 (MQ=60)

                   GCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTG                                                                            <  SRR4302541.316292/94‑1 (MQ=60)

                    CGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGC                                                                           >  SRR4302541.6725311/1‑94 (MQ=60)

                    CGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGC                                                                           <  SRR4302541.7610844/94‑1 (MQ=60)

                     GCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCC                                                                          <  SRR4302541.5830338/94‑1 (MQ=60)

                     GCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGCTTTCGCGCAGCCATTGCC                                                                          >  SRR4302541.6175332/1‑94 (MQ=60)

                      CACGGTAAACCACTGAATGTGCTGTTGATGCCCGGCCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGTGGGTTTTCGCGCAGCCATTGCCG                                                                         >  SRR4302541.5236397/1‑94 (MQ=60)

                      CACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCG                                                                         <  SRR4302541.1569448/94‑1 (MQ=60)

                      CACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCG                                                                         >  SRR4302541.4434618/1‑94 (MQ=60)

                      CACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCG                                                                         >  SRR4302541.3453805/1‑94 (MQ=60)

                       ACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGG                                                                        >  SRR4302541.2527577/1‑94 (MQ=60)

                       ACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGG                                                                        >  SRR4302541.5909578/1‑94 (MQ=60)

                        CGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGA                                                                       >  SRR4302541.8756643/1‑94 (MQ=60)

                        CGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGA                                                                       >  SRR4302541.210148/1‑94 (MQ=60)

                          GTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAG                                                                     <  SRR4302541.8549283/94‑1 (MQ=60)

                          GTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAG                                                                     <  SRR4302541.8549285/94‑1 (MQ=60)

                           TAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCGGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGC                                                                    >  SRR4302541.8834028/1‑94 (MQ=60)

                            AAACCACTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCC                                                                   >  SRR4302541.4125083/1‑94 (MQ=60)

                            AAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCC                                                                   >  SRR4302541.1150688/1‑94 (MQ=60)

                            AAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCC                                                                   <  SRR4302541.109524/94‑1 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                  >  SRR4302541.2374710/1‑94 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                  >  SRR4302541.1956802/1‑94 (MQ=60)

                             AACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCC                                                                  <  SRR4302541.6993276/94‑1 (MQ=60)

                              ACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCG                                                                 <  SRR4302541.4290485/94‑1 (MQ=60)

                              ACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCG                                                                 >  SRR4302541.7754837/1‑94 (MQ=60)

                              ACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCG                                                                 <  SRR4302541.3979234/94‑1 (MQ=60)

                               CCACTGAATGTGCTGTTGATGCCCAGACACGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGG                                                                <  SRR4302541.7910469/94‑1 (MQ=60)

                                CACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGT                                                               >  SRR4302541.6369491/1‑94 (MQ=60)

                                CACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGT                                                               >  SRR4302541.6120582/1‑94 (MQ=60)

                                CACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGT                                                               >  SRR4302541.6440417/1‑94 (MQ=60)

                                 ACTGAATGTGCTTTTGATGCCGGGACCCGATAACGCCGGGGTCAGTAAGGAGATGGTCGAGTGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTG                                                              <  SRR4302541.6497380/94‑1 (MQ=60)

                                 ACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCGGGTG                                                              >  SRR4302541.2799854/1‑94 (MQ=60)

                                 ACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTG                                                              >  SRR4302541.4656639/1‑94 (MQ=60)

                                  CTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGC                                                             <  SRR4302541.8817124/94‑1 (MQ=60)

                                   TGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCG                                                            <  SRR4302541.7080697/94‑1 (MQ=60)

                                   TGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCG                                                            <  SRR4302541.2567058/94‑1 (MQ=60)

                                     AATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTA                                                          >  SRR4302541.6368836/1‑94 (MQ=60)

                                     AATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTA                                                          >  SRR4302541.5207286/1‑94 (MQ=60)

                                      ATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTAT                                                         >  SRR4302541.6015267/1‑94 (MQ=60)

                                       TGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATT                                                        >  SRR4302541.7618081/1‑94 (MQ=60)

                                       TGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATGGCCGGAAGCCCGGTGCGTATT                                                        >  SRR4302541.7585464/1‑94 (MQ=60)

                                        GTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTG                                                       >  SRR4302541.4712989/1‑94 (MQ=60)

                                          GCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTT                                                     >  SRR4302541.171717/1‑94 (MQ=60)

                                           CTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGCAGCCCGGTGCGTATTGTTG                                                    >  SRR4302541.7973500/1‑94 (MQ=60)

                                           CTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTG                                                    <  SRR4302541.4303987/94‑1 (MQ=60)

                                            TGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTGTTGTTGA                                                   >  SRR4302541.7608197/1‑94 (MQ=60)

                                             GTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGAT                                                  <  SRR4302541.1056813/94‑1 (MQ=60)

                                              TTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATA                                                 <  SRR4302541.710943/94‑1 (MQ=60)

                                              TTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATA                                                 <  SRR4302541.908273/94‑1 (MQ=60)

                                               TGATGCCCGGACCCGATAACGCCGGGGTCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATAT                                                <  SRR4302541.4494828/94‑1 (MQ=60)

                                                GATGCCCTGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATT                                               <  SRR4302541.1112299/94‑1 (MQ=60)

                                                GATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATT                                               <  SRR4302541.5264111/94‑1 (MQ=60)

                                                GATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATT                                               >  SRR4302541.6717155/1‑94 (MQ=60)

                                                 ATGCCCGGGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTG                                              >  SRR4302541.6626814/1‑94 (MQ=60)

                                                 ATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTG                                              >  SRR4302541.1789900/1‑94 (MQ=60)

                                                  TGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGC                                             <  SRR4302541.235186/94‑1 (MQ=60)

                                                   GCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCG                                            <  SRR4302541.1059314/94‑1 (MQ=60)

                                                    CCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGC                                           >  SRR4302541.8020327/1‑94 (MQ=60)

                                                    CCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGC                                           >  SRR4302541.6461156/1‑94 (MQ=60)

                                                      CGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTT                                         >  SRR4302541.4538456/1‑94 (MQ=60)

                                                       GGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTG                                        >  SRR4302541.8027526/1‑94 (MQ=60)

                                                        GGCCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGG                                       <  SRR4302541.7438173/94‑1 (MQ=60)

                                                         ACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGT                                      <  SRR4302541.820028/94‑1 (MQ=60)

                                                         ACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGG                                      >  SRR4302541.6131748/1‑94 (MQ=60)

                                                          CCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTG                                     <  SRR4302541.3273481/94‑1 (MQ=60)

                                                          CCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTG                                     <  SRR4302541.6874921/94‑1 (MQ=60)

                                                          CCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTG                                     <  SRR4302541.1867011/94‑1 (MQ=60)

                                                          CCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGGGCGTATTGTTGATATTGCGCTTGGTG                                     >  SRR4302541.454864/1‑94 (MQ=60)

                                                           CCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGA                                    >  SRR4302541.298895/1‑94 (MQ=60)

                                                           CCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGA                                    <  SRR4302541.3395770/94‑1 (MQ=60)

                                                             GATAACGCCGGGGGCAGTAAGGCGATGGTCGAGGGATTTCGCGCAGCCATTGCCGGAAGCCCGCTGCGTATTGTGGATATTGCGCTTGGTGATA                                  >  SRR4302541.3589722/1‑94 (MQ=60)

                                                             GATAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATA                                  <  SRR4302541.7104625/94‑1 (MQ=60)

                                                               TAACGCCGGGGTCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAC                                <  SRR4302541.1485115/94‑1 (MQ=60)

                                                               TAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAC                                <  SRR4302541.4233327/94‑1 (MQ=60)

                                                               TAACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAAC                                <  SRR4302541.1010871/94‑1 (MQ=60)

                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACG                               >  SRR4302541.6318187/1‑94 (MQ=60)

                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACG                               >  SRR4302541.1130052/1‑94 (MQ=60)

                                                                AACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACG                               <  SRR4302541.3786011/94‑1 (MQ=60)

                                                                 ACGCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGA                              <  SRR4302541.7316066/94‑1 (MQ=60)

                                                                  CGCTGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGAT                             <  SRR4302541.2774261/94‑1 (MQ=60)

                                                                   GCGGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGATGCGCATTGTTGATATTGCGCTTGGTGATAACGATA                            <  SRR4302541.8751740/94‑1 (MQ=60)

                                                                   GCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATA                            <  SRR4302541.2712688/94‑1 (MQ=60)

                                                                   GCCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGCATTGTTGATATTGCGCTTGGTGATAACGATA                            <  SRR4302541.8751739/94‑1 (MQ=60)

                                                                    CCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAT                           >  SRR4302541.4863475/1‑94 (MQ=60)

                                                                    CCGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATAT                           <  SRR4302541.1519751/94‑1 (MQ=60)

                                                                     CGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAGCGATATT                          <  SRR4302541.6277562/94‑1 (MQ=60)

                                                                     CGGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATT                          <  SRR4302541.8598556/94‑1 (MQ=60)

                                                                      GGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTG                         <  SRR4302541.3681458/94‑1 (MQ=60)

                                                                      GGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTG                         <  SRR4302541.7209028/94‑1 (MQ=60)

                                                                      GGGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTG                         <  SRR4302541.1642171/94‑1 (MQ=60)

                                                                       GGGGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGA                        >  SRR4302541.6491701/1‑94 (MQ=60)

                                                                         GGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATCTTGCGCTTGGTGATAACGATATTGAAA                      >  SRR4302541.4469440/1‑94 (MQ=60)

                                                                         GGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAA                      >  SRR4302541.7028570/1‑94 (MQ=60)

                                                                         GGCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAA                      <  SRR4302541.2574173/94‑1 (MQ=60)

                                                                          GCAGTAAGGAGATTGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAT                     <  SRR4302541.2087835/94‑1 (MQ=60)

                                                                          GCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGGCCGGTTCCTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAT                     <  SRR4302541.4796207/94‑1 (MQ=60)

                                                                          GCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAT                     >  SRR4302541.2782458/1‑94 (MQ=60)

                                                                          GCAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAAT                     <  SRR4302541.1041133/94‑1 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                    >  SRR4302541.4614876/1‑94 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                    >  SRR4302541.763299/1‑94 (MQ=60)

                                                                           CAGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATC                    >  SRR4302541.5587797/1‑94 (MQ=60)

                                                                            AGTAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCC                   <  SRR4302541.8684235/94‑1 (MQ=60)

                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG                 <  SRR4302541.2516095/94‑1 (MQ=60)

                                                                              TAAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAG                 <  SRR4302541.7262002/94‑1 (MQ=60)

                                                                               AAGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGC                <  SRR4302541.2974640/94‑1 (MQ=60)

                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCG               >  SRR4302541.5565912/1‑94 (MQ=60)

                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCG               <  SRR4302541.5854518/94‑1 (MQ=60)

                                                                                AGGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATACAGCG               >  SRR4302541.5565911/1‑94 (MQ=60)

                                                                                 GGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGT              >  SRR4302541.1034613/1‑94 (MQ=60)

                                                                                 GGAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGT              >  SRR4302541.4865624/1‑94 (MQ=60)

                                                                                  GAGATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGAGTA             <  SRR4302541.5223750/94‑1 (MQ=60)

                                                                                    GATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAAC           >  SRR4302541.34689/1‑94 (MQ=60)

                                                                                     ATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACC          >  SRR4302541.4113121/1‑94 (MQ=60)

                                                                                     ATGGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACC          >  SRR4302541.6186853/1‑94 (MQ=60)

                                                                                       GGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTG        <  SRR4302541.6033977/94‑1 (MQ=60)

                                                                                       GGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTG        >  SRR4302541.6287823/1‑94 (MQ=60)

                                                                                       GGTCGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTG        <  SRR4302541.6389688/94‑1 (MQ=60)

                                                                                          CGAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTG     >  SRR4302541.6943835/1‑94 (MQ=60)

                                                                                           GAGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTGTTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGC    >  SRR4302541.3565012/1‑94 (MQ=60)

                                                                                            AGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCA   >  SRR4302541.1870815/1‑94 (MQ=60)

                                                                                            AGGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCA   >  SRR4302541.6363497/1‑94 (MQ=60)

                                                                                             GGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCAG  >  SRR4302541.2277551/1‑94 (MQ=60)

GCGATATCTGGTGCAATGGGCGCACGGTAAACCACTGAATGTGCTGTTGATGCCCGGACCCGATAACGCCGGGGGCAGTAAGGAGATGGTCGAAGGTTTTCGCGCAGCCATTGCCGGAAGCCCGGTGCGTATTGTTGATATTGCGCTTGGTGATAACGATATTGAAATCCAGCGTAACCTGTTGCAG  >  NC_000913/1055948‑1056134

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`