Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,147,697 |
A→G |
N275S (AAC→AGC) |
plsX → |
PlsX |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,147,697 | 0 | A | G | 100.0%
| 784.0
/ NA
| 225 | N275S (AAC→AGC) | plsX | PlsX |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (110/115); total (110/115) |
Only 100 of 232 total aligned reads displayed.
TCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAACCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGG > NC_000913/1147608‑1147786
|
tcAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGccc > 1:4865407/1‑93 (MQ=255)
tcAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGccc < 1:2280229/93‑1 (MQ=255)
tcAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCAACTCAGccc > 1:1883262/1‑93 (MQ=255)
cAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGcccc < 2:5019758/93‑1 (MQ=255)
cAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGcccc < 1:1904377/93‑1 (MQ=255)
gggTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGTTTCAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGccccca > 1:430560/1‑91 (MQ=255)
ggTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGAc < 2:6353885/93‑1 (MQ=255)
taaGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAg < 1:356828/92‑1 (MQ=255)
aGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGta < 2:4812225/93‑1 (MQ=255)
aGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGta > 1:3170568/1‑93 (MQ=255)
gggAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGtat > 1:3053683/1‑93 (MQ=255)
aaaaaaCGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAAc < 1:558086/93‑1 (MQ=255)
aaaCGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGgc > 2:5264037/1‑93 (MQ=255)
aaaCGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGgc < 1:1232848/93‑1 (MQ=255)
aaCGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAATGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGgcg > 2:3434318/1‑93 (MQ=255)
aaCGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGgcg > 1:6306083/1‑93 (MQ=255)
cGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGcc < 2:3077200/93‑1 (MQ=255)
cGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGcc < 1:4077457/93‑1 (MQ=255)
cGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGcc < 1:110787/93‑1 (MQ=255)
cGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGcc < 1:1004012/93‑1 (MQ=255)
ggTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGTct > 1:2077693/1‑93 (MQ=255)
gTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCctg > 1:2317481/1‑93 (MQ=255)
gTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCctg < 2:6006341/93‑1 (MQ=255)
gTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCctg < 2:6087456/93‑1 (MQ=255)
gTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCctg < 2:2910940/93‑1 (MQ=255)
gtggtgGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCctgtct > 2:2436614/1‑93 (MQ=255)
gtggtgGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCctgtct > 2:2075773/1‑93 (MQ=255)
tggtggCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCctgtctg > 1:4680962/1‑93 (MQ=255)
ggtggCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCTCCTCAGCCCCGACCAGTATAACGGCGCctgtctgt < 2:2500381/93‑1 (MQ=255)
ggtggCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCctgtctgt < 2:3217089/93‑1 (MQ=255)
ggtggCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCctgtctgt < 2:5961315/93‑1 (MQ=255)
ggCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAg < 2:2268379/93‑1 (MQ=255)
ggCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAg > 1:3871156/1‑93 (MQ=255)
ggCTACTGTAATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAg > 1:4714471/1‑93 (MQ=255)
cTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGa < 1:5014533/93‑1 (MQ=255)
cTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGa > 1:6038393/1‑93 (MQ=255)
tACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGAt > 2:2985906/1‑93 (MQ=255)
aCTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGAtt < 2:5342090/93‑1 (MQ=255)
aCTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGAtt < 1:314215/93‑1 (MQ=255)
cTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTg < 2:1418557/93‑1 (MQ=255)
cTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTg > 2:4902652/1‑93 (MQ=255)
tGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTgc < 1:1759243/93‑1 (MQ=255)
tGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTgc < 1:3456982/93‑1 (MQ=255)
tattaAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGcgcg < 2:4165625/93‑1 (MQ=255)
ttaAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGc < 1:789406/93‑1 (MQ=255)
ttaAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGc > 2:4130692/1‑93 (MQ=255)
ttaAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGc < 1:3375653/93‑1 (MQ=255)
aaaGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCag > 2:4603683/1‑92 (MQ=255)
aaaGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCAc > 1:3687368/1‑93 (MQ=255)
aaaGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCAc < 2:5477261/93‑1 (MQ=255)
aaGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACg > 2:5441892/1‑93 (MQ=255)
aaGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACg > 2:3582104/1‑93 (MQ=255)
gCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGt < 2:3837678/93‑1 (MQ=255)
cGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTg < 2:2767452/93‑1 (MQ=255)
cGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTg < 2:6465596/93‑1 (MQ=255)
gTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGa < 1:4167398/93‑1 (MQ=255)
gTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGa > 2:2196518/1‑93 (MQ=255)
ttGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGAt < 1:1115519/93‑1 (MQ=255)
ttGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGAt < 1:3939644/93‑1 (MQ=255)
tgCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATaa > 1:264248/2‑93 (MQ=255)
ggCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATaa > 1:3960807/1‑93 (MQ=255)
gCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATaaa < 2:5158975/93‑1 (MQ=255)
gCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATaaa > 1:5146659/1‑93 (MQ=255)
cAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGt > 2:5544368/1‑93 (MQ=255)
aaaGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCa < 2:2732428/93‑1 (MQ=255)
aaaGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCa > 2:4667280/1‑93 (MQ=255)
aaGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCAt < 1:4747226/93‑1 (MQ=255)
aaGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCAt < 2:1946145/93‑1 (MQ=255)
aaGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCAt > 1:5757844/1‑93 (MQ=255)
agagCCTGCCGAGGCGATTCAGTCACCTCAGCCCCGACCAGGATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATg > 1:6273468/1‑93 (MQ=255)
agagCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATg > 2:3516407/1‑93 (MQ=255)
agagCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATg > 2:3995397/1‑93 (MQ=255)
gagCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATgg < 1:2116534/93‑1 (MQ=255)
gagCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATgg < 2:4068783/93‑1 (MQ=255)
gagCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATgg < 2:429049/93‑1 (MQ=255)
agCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGt > 1:2928881/1‑93 (MQ=255)
gCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTg < 2:3450546/93‑1 (MQ=255)
gCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTg < 2:203432/93‑1 (MQ=255)
ccTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGc < 1:4609400/93‑1 (MQ=255)
cTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCa < 2:1896104/93‑1 (MQ=255)
cTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCa > 2:3323545/1‑93 (MQ=255)
cTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCa > 2:3191335/1‑93 (MQ=255)
cTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCa > 2:5031235/1‑93 (MQ=255)
taCGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGc < 2:778537/92‑1 (MQ=255)
gACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGc > 2:4451328/1‑93 (MQ=255)
gACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGc > 1:1970592/1‑93 (MQ=255)
aCGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGcc > 2:4720663/1‑93 (MQ=255)
aCGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGcc > 1:2407006/1‑93 (MQ=255)
cGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCa < 2:2695491/93‑1 (MQ=255)
gAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCaa > 2:1791355/1‑93 (MQ=255)
gAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCaa < 1:5336063/93‑1 (MQ=255)
ggCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATc < 1:901843/93‑1 (MQ=255)
gATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGc < 1:481465/93‑1 (MQ=255)
ttCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGa > 1:6429600/1‑93 (MQ=255)
gTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCtt > 1:2590834/1‑93 (MQ=255)
cACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCtttt > 1:5104579/1‑93 (MQ=255)
ccTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGc < 2:381628/93‑1 (MQ=255)
ccTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGc < 2:2377677/93‑1 (MQ=255)
tCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCgg < 2:1527251/93‑1 (MQ=255)
tCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCgg < 2:1244204/93‑1 (MQ=255)
|
TCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAACCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGG > NC_000913/1147608‑1147786
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
AATCTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAACCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGGTCG > NC_000913/1147604‑1147789
|
AATCTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAC > SRR4302534.2889984/1‑94 (MQ=60)
ATCTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACCAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGC > SRR4302534.3552534/1‑94 (MQ=60)
ATCTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGC > SRR4302534.2096492/1‑94 (MQ=60)
ATCTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGC < SRR4302534.1052431/94‑1 (MQ=60)
TCTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCC < SRR4302534.2321387/94‑1 (MQ=60)
CTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCC > SRR4302534.4997383/1‑94 (MQ=60)
CTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCC > SRR4302534.1951263/1‑94 (MQ=60)
CTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCC > SRR4302534.4301296/1‑94 (MQ=60)
CTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCAACTCAGCCC > SRR4302534.1932329/1‑94 (MQ=60)
TCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCC < SRR4302534.2340735/94‑1 (MQ=60)
CAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCG < SRR4302534.1954054/94‑1 (MQ=60)
CAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCG > SRR4302534.2016465/1‑94 (MQ=60)
AGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGTTTCAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCCA > SRR4302534.441546/1‑94 (MQ=60)
AGGGTGAAGGGAAAAAACGGTCGTGGTGGCCACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGA > SRR4302534.2952808/1‑94 (MQ=60)
TAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGT < SRR4302534.365957/94‑1 (MQ=60)
GAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGT > SRR4302534.2411928/1‑94 (MQ=60)
GAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGT < SRR4302534.5065583/94‑1 (MQ=60)
AAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTA > SRR4302534.3254213/1‑94 (MQ=60)
AGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTAT > SRR4302534.3133804/1‑94 (MQ=60)
AGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTAT > SRR4302534.3978894/1‑94 (MQ=60)
GAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAAC < SRR4302534.389528/94‑1 (MQ=60)
AAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACG < SRR4302534.571848/94‑1 (MQ=60)
AAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGC < SRR4302534.1000420/94‑1 (MQ=60)
AAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCG > SRR4302534.4849345/1‑94 (MQ=60)
AAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCG > SRR4302534.6476605/1‑94 (MQ=60)
AAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCG < SRR4302534.1265334/94‑1 (MQ=60)
CGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGTCT > SRR4302534.2132090/1‑94 (MQ=60)
CGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCT < SRR4302534.4186885/94‑1 (MQ=60)
CGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCT < SRR4302534.1029770/94‑1 (MQ=60)
CGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCT < SRR4302534.113741/94‑1 (MQ=60)
CGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCT > SRR4302534.5374652/1‑94 (MQ=60)
GGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTG > SRR4302534.2378980/1‑94 (MQ=60)
GGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTG < SRR4302534.4825681/94‑1 (MQ=60)
GTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGT > SRR4302534.3058439/1‑94 (MQ=60)
CGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCT < SRR4302534.4467706/94‑1 (MQ=60)
GTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTG < SRR4302534.5284220/94‑1 (MQ=60)
GTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTG > SRR4302534.4808058/1‑94 (MQ=60)
GTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTA > SRR4302534.6638053/1‑94 (MQ=60)
GTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTA < SRR4302534.5644064/94‑1 (MQ=60)
GTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTA < SRR4302534.5416028/94‑1 (MQ=60)
TGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAG > SRR4302534.4863811/1‑94 (MQ=60)
TGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAG > SRR4302534.3975103/1‑94 (MQ=60)
TGGCTACTGTAATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAG > SRR4302534.4842499/1‑94 (MQ=60)
GCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGA > SRR4302534.6202492/1‑94 (MQ=60)
CTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGAT > SRR4302534.210325/1‑94 (MQ=60)
CTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGAT < SRR4302534.4908328/94‑1 (MQ=60)
CTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGAT < SRR4302534.5150050/94‑1 (MQ=60)
ACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTG > SRR4302534.4059366/1‑94 (MQ=60)
ACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTG < SRR4302534.201394/94‑1 (MQ=60)
ACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTG < SRR4302534.322314/94‑1 (MQ=60)
CTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGC < SRR4302534.6448449/94‑1 (MQ=60)
TGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCG < SRR4302534.1804891/94‑1 (MQ=60)
TGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCG < SRR4302534.3549913/94‑1 (MQ=60)
TGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCG < SRR4302534.580750/94‑1 (MQ=60)
GTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGC < SRR4302534.3370567/94‑1 (MQ=60)
GTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGC > SRR4302534.5033371/1‑94 (MQ=60)
TTATTAACGCGTGGGATACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCG < SRR4302534.1139819/94‑1 (MQ=60)
TTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCG < SRR4302534.3553639/94‑1 (MQ=60)
TTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCA < SRR4302534.3466122/94‑1 (MQ=60)
TTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCA < SRR4302534.809176/94‑1 (MQ=60)
TAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCAC > SRR4302534.3786513/1‑94 (MQ=60)
TAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCAC > SRR4302534.3405286/1‑94 (MQ=60)
AAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACG > SRR4302534.4084914/1‑94 (MQ=60)
AAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGG > SRR4302534.3248304/1‑94 (MQ=60)
AGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGT > SRR4302534.4771309/1‑94 (MQ=60)
CGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGA > SRR4302534.4989929/1‑94 (MQ=60)
GTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGAT < SRR4302534.4279962/94‑1 (MQ=60)
TTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATA < SRR4302534.4045151/94‑1 (MQ=60)
TTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATA < SRR4302534.1144642/94‑1 (MQ=60)
TTGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAA > SRR4302534.271103/1‑94 (MQ=60)
TGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAA > SRR4302534.2266270/1‑94 (MQ=60)
TGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAA > SRR4302534.4066859/1‑94 (MQ=60)
GGCTACAAAAGAGCCTGACGATGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAA < SRR4302534.2348917/94‑1 (MQ=60)
GGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAA > SRR4302534.5285523/1‑94 (MQ=60)
CAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTC > SRR4302534.2708414/1‑94 (MQ=60)
AAAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCAT > SRR4302534.5914028/1‑94 (MQ=60)
AAGAGCCTGCCGAGGCGATTCAGTCACCTCAGCCCCGACCAGGATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATG > SRR4302534.6443300/1‑94 (MQ=60)
AAGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATG < SRR4302534.4876091/94‑1 (MQ=60)
AGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGG > SRR4302534.3200603/1‑94 (MQ=60)
AGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGG < SRR4302534.2256049/94‑1 (MQ=60)
AGAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGG > SRR4302534.1912905/1‑94 (MQ=60)
gaccgTGACGAGGCGATTCAGTCGCCTCAGCCCCGCCCAGTATAGCGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAACGTCATGGT < SRR4302534.1483923/89‑1 (MQ=60)
GAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGT > SRR4302534.3005781/1‑94 (MQ=60)
GAGCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGT < SRR4302534.2172221/94‑1 (MQ=60)
GCCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGC < SRR4302534.3038627/94‑1 (MQ=60)
TCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAACAGTCATGGTGCG > SRR4302534.2167484/1‑94 (MQ=60)
CCTGACGAGGCGATTCAGTCACCTCAGCCCGGA‑CAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAG < SRR4302534.1660915/94‑1 (MQ=60)
CCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCA < SRR4302534.4734519/94‑1 (MQ=60)
CCTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCA < SRR4302534.2846590/94‑1 (MQ=60)
CTGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAG < SRR4302534.6026995/94‑1 (MQ=60)
TGACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGC > SRR4302534.2022181/1‑94 (MQ=60)
GACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCC > SRR4302534.2470973/1‑94 (MQ=60)
GACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCC > SRR4302534.1060314/1‑94 (MQ=60)
ACGAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCA < SRR4302534.2606810/94‑1 (MQ=60)
GAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAAT < SRR4302534.5479941/94‑1 (MQ=60)
GAGGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAAT > SRR4302534.856871/1‑94 (MQ=60)
GGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCA < SRR4302534.924718/94‑1 (MQ=60)
GGCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCA < SRR4302534.1146480/94‑1 (MQ=60)
GCGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAG < SRR4302534.593403/94‑1 (MQ=60)
CGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGC > SRR4302534.1270752/1‑94 (MQ=60)
CGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGC > SRR4302534.6492893/1‑94 (MQ=60)
CGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGC > SRR4302534.4239731/1‑94 (MQ=60)
CGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGC < SRR4302534.3687641/94‑1 (MQ=60)
CGATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGGGATAAAAAGTCATGGTGCAGCCAATCAGC > SRR4302534.3485004/1‑94 (MQ=60)
GATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCG > SRR4302534.6304244/1‑94 (MQ=60)
GATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCG < SRR4302534.493542/94‑1 (MQ=60)
ATTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGA > SRR4302534.6602959/1‑94 (MQ=60)
TTCAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAG < SRR4302534.4525017/94‑1 (MQ=60)
CAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCATGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCT > SRR4302534.2560465/1‑94 (MQ=60)
CAGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCT > SRR4302534.6482351/1‑94 (MQ=60)
AGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTT < SRR4302534.4054508/94‑1 (MQ=60)
AGTCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTT > SRR4302534.2659422/1‑94 (MQ=60)
TCACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTT > SRR4302534.5242340/1‑94 (MQ=60)
ACCTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGC > SRR4302534.3738588/1‑94 (MQ=60)
CTCAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGG > SRR4302534.515083/1‑94 (MQ=60)
CAGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGGTC < SRR4302534.2254238/94‑1 (MQ=60)
AGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGGTCG < SRR4302534.5943048/94‑1 (MQ=60)
AGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGGTCG > SRR4302534.6355724/1‑94 (MQ=60)
AGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGGTCG > SRR4302534.294206/1‑94 (MQ=60)
AGCCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGGTCG > SRR4302534.2428820/1‑94 (MQ=60)
|
AATCTCAGGGTGAAGGGAAAAAACGGTCGTGGTGGCTACTGTTATTAAAGCGTTGGCTACAAAAGAGCCTGACGAGGCGATTCAGTCACCTCAACCCCGACCAGTATAACGGCGCCTGTCTGTTAGGATTGCGCGGCACGGTGATAAAAAGTCATGGTGCAGCCAATCAGCGAGCTTTTGCGGTCG > NC_000913/1147604‑1147789
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
