Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,175,607	A→G	S320G (AGC→GGC)	ycfU →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,175,607	0	A	G	100.0%	876.0 / NA	253	S320G (AGC→GGC)	ycfU	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (143/110); total (143/110)

Only 100 of 261 total aligned reads displayed.

GTAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTC  >  NC_000913/1175517‑1175696

gTAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGgc                                                                                         >  2:2795625/1‑93 (MQ=255)

  aaTGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGgcgc                                                                                       <  2:5392136/93‑1 (MQ=255)

  aaTGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGgcgc                                                                                       <  1:4666066/93‑1 (MQ=255)

  aaTGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGgcgc                                                                                       >  1:5341191/1‑93 (MQ=255)

   aTGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGcc                                                                                      <  1:563109/93‑1 (MQ=255)

   aTGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGcc                                                                                      >  2:3490151/1‑93 (MQ=255)

   aTGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGcc                                                                                      >  2:4346802/1‑93 (MQ=255)

     ggAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCgg                                                                                    >  2:179611/1‑93 (MQ=255)

     ggAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCgg                                                                                    <  2:6042538/93‑1 (MQ=255)

      gagaAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCggg                                                                                   >  1:670781/1‑93 (MQ=255)

       agaAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGa                                                                                  >  1:2906862/1‑93 (MQ=255)

        gaAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGAt                                                                                 >  2:1519987/1‑93 (MQ=255)

          aGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTa                                                                               >  1:4019281/1‑93 (MQ=255)

             aGGGCGAAGTAGCGATCCTGCGAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCg                                                                            >  1:4367327/1‑93 (MQ=255)

              gggCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCgg                                                                           >  2:462094/1‑93 (MQ=255)

              gggCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCgg                                                                           <  2:3367099/93‑1 (MQ=255)

                   aaGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGa                                                                      >  2:3951596/1‑93 (MQ=255)

                    aGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGAt                                                                     >  1:3579795/1‑93 (MQ=255)

                     gTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATc                                                                    >  2:6282282/1‑93 (MQ=255)

                     gTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATc                                                                    >  2:486915/1‑93 (MQ=255)

                     gTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATc                                                                    >  2:2664227/1‑93 (MQ=255)

                       aGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCt                                                                  <  1:2849695/93‑1 (MQ=255)

                       aGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCt                                                                  <  2:6391449/93‑1 (MQ=255)

                       aGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCt                                                                  >  2:5209081/1‑93 (MQ=255)

                         cGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCg                                                                <  2:5062855/93‑1 (MQ=255)

                          gATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCgg                                                               >  1:5290452/1‑93 (MQ=255)

                           aTCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGa                                                              <  1:1028748/93‑1 (MQ=255)

                             ccTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAgc                                                            <  1:5616587/93‑1 (MQ=255)

                             ccTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAgc                                                            >  2:1353606/1‑93 (MQ=255)

                             ccTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAgc                                                            >  1:5865958/1‑93 (MQ=255)

                              cTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAgcg                                                           >  2:4725779/1‑93 (MQ=255)

                                gCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAgcggc                                                         >  2:2315190/1‑93 (MQ=255)

                                 cAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCACGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAgcggcg                                                        <  2:4518108/93‑1 (MQ=255)

                                  aaaCGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGgcgc                                                       <  1:1699367/93‑1 (MQ=255)

                                  aaaCGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGgcgc                                                       >  1:3536279/1‑93 (MQ=255)

                                  aaaCGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGgcgc                                                       >  1:5730634/1‑93 (MQ=255)

                                  aaaCGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCAGGATTATCGGTGCGATCCTCGGAGCGgcgc                                                       >  2:38716/1‑93 (MQ=255)

                                   aaCGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCt                                                      >  1:4308690/1‑93 (MQ=255)

                                   aaCGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCt                                                      <  1:3262239/93‑1 (MQ=255)

                                    aCGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCtt                                                     <  2:595113/93‑1 (MQ=255)

                                    aCGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGGGCGATCCTCGGAGCGGCGCtt                                                     >  1:847259/1‑93 (MQ=255)

                                     cGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTg                                                    <  2:1971466/93‑1 (MQ=255)

                                      gCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTgg                                                   <  2:5178159/93‑1 (MQ=255)

                                      gCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTgg                                                   <  2:4794752/93‑1 (MQ=255)

                                       cAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGgc                                                  <  2:1404279/93‑1 (MQ=255)

                                        aaGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGgcg                                                 >  1:4959668/1‑93 (MQ=255)

                                        aaGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGgcg                                                 >  2:249804/1‑93 (MQ=255)

                                          ggCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGcc                                               >  2:77841/1‑93 (MQ=255)

                                           gCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGccc                                              <  2:4975173/93‑1 (MQ=255)

                                            cTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCt                                             >  1:2696075/1‑93 (MQ=255)

                                            cTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCt                                             <  1:4988893/93‑1 (MQ=255)

                                              tAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGc                                           >  1:2468683/1‑93 (MQ=255)

                                               aaCTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCt                                          >  1:5907931/1‑93 (MQ=255)

                                               aaCTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCt                                          >  2:403479/1‑93 (MQ=255)

                                                aCTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCtt                                         >  2:3139343/1‑93 (MQ=255)

                                                 cTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTg                                        >  1:3117757/1‑93 (MQ=255)

                                                 cTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCACCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTg                                        >  1:1010499/1‑93 (MQ=255)

                                                   ccGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTgcc                                      <  2:5587874/93‑1 (MQ=255)

                                                    cgcgACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTgcca                                     >  1:2377791/1‑93 (MQ=255)

                                                       gACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTgccagcc                                  <  2:869151/93‑1 (MQ=255)

                                                        aCAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTgccagcca                                 <  2:1873401/93‑1 (MQ=255)

                                                         cAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGccagccag                                <  2:4202268/93‑1 (MQ=255)

                                                         cAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGccagccag                                <  1:4516186/93‑1 (MQ=255)

                                                          aaaTCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGGGCTTGGCGCCCTGCTTGCCAGCCAGt                               <  2:5281685/93‑1 (MQ=255)

                                                          aaaTCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGt                               >  2:4372452/1‑93 (MQ=255)

                                                          aaaTCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGt                               <  2:5880600/93‑1 (MQ=255)

                                                          aaaTCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGt                               <  2:3625558/93‑1 (MQ=255)

                                                            aTCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTa                             >  1:2593222/1‑93 (MQ=255)

                                                             tCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTaa                            >  2:334504/1‑93 (MQ=255)

                                                              cATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTaaa                           >  2:1418993/1‑93 (MQ=255)

                                                               atgatgGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAaat                          >  2:2958407/1‑93 (MQ=255)

                                                                tgatgGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCTGTTAaata                         >  1:1852686/1‑93 (MQ=255)

                                                                tgatgGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAaata                         <  1:2959947/93‑1 (MQ=255)

                                                                tgatgGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAaata                         >  2:1718576/1‑93 (MQ=255)

                                                                  atgGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAaataat                       >  1:313226/1‑93 (MQ=255)

                                                                  atgGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAaataat                       >  1:4288292/1‑93 (MQ=255)

                                                                   tgGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATc                      <  2:3762298/93‑1 (MQ=255)

                                                                    ggTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCt                     >  1:2760273/1‑93 (MQ=255)

                                                                      tCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGa                   <  1:5379866/93‑1 (MQ=255)

                                                                        tttATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATg                 >  2:2092849/1‑93 (MQ=255)

                                                                        tttATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATg                 >  2:2812963/1‑93 (MQ=255)

                                                                          tATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGcc               >  1:6144691/1‑93 (MQ=255)

                                                                          tATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGcc               <  1:1641807/93‑1 (MQ=255)

                                                                           aTGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCg              >  2:3198968/1‑93 (MQ=255)

                                                                           aTGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCg              <  2:1669248/93‑1 (MQ=255)

                                                                            tGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGa             >  2:1752233/1‑93 (MQ=255)

                                                                             ggTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGAt            <  2:2204703/93‑1 (MQ=255)

                                                                              gTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATa           <  1:1366654/93‑1 (MQ=255)

                                                                              gTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATa           >  2:1636396/1‑93 (MQ=255)

                                                                                gCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAAt         >  2:1229782/1‑93 (MQ=255)

                                                                                 cAAGGGGCGGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATc        <  2:3396558/93‑1 (MQ=255)

                                                                                 cAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATc        <  1:5480299/93‑1 (MQ=255)

                                                                                   aGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCgg      >  1:93407/1‑93 (MQ=255)

                                                                                   aGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCgg      >  1:2199091/1‑93 (MQ=255)

                                                                                    ggggCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGc     >  1:1227037/1‑93 (MQ=255)

                                                                                    ggggCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGc     >  2:1227011/1‑93 (MQ=255)

                                                                                     gggCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCg    >  1:2272259/1‑93 (MQ=255)

                                                                                      ggCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGt   <  1:552279/93‑1 (MQ=255)

                                                                                      ggCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGt   >  1:6463196/1‑93 (MQ=255)

                                                                                       gCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTc  >  1:987735/1‑93 (MQ=255)

GTAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTC  >  NC_000913/1175517‑1175696

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGGTAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTCCTG  >  NC_000913/1175514‑1175699

aggcTAATGGAGAAGCAGGCCAAAGTAACGATCCTCCAAACGCAAGGCTTAACCCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCG                                                                                              <  SRR4302534.4566360/90‑1 (MQ=60)

ATGGTAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCG                                                                                              >  SRR4302534.5933069/1‑94 (MQ=60)

  GGTAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGC                                                                                            >  SRR4302534.5801146/1‑94 (MQ=60)

  GGTAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGC                                                                                            >  SRR4302534.5791088/1‑94 (MQ=60)

    TAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGC                                                                                          >  SRR4302534.6033913/1‑94 (MQ=60)

    TAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGC                                                                                          >  SRR4302534.5485188/1‑94 (MQ=60)

    TAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGC                                                                                          >  SRR4302534.589501/1‑94 (MQ=60)

     AATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCC                                                                                         >  SRR4302534.5266162/1‑94 (MQ=60)

     AATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCA                                                                                         <  SRR4302534.4792745/94‑1 (MQ=60)

      ATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCG                                                                                        <  SRR4302534.576958/94‑1 (MQ=60)

      ATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCCGCGCCG                                                                                        >  SRR4302534.2797987/1‑94 (MQ=60)

        GGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGG                                                                                      >  SRR4302534.687127/1‑94 (MQ=60)

         GAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGA                                                                                     >  SRR4302534.2983166/1‑94 (MQ=60)

            AAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTA                                                                                  >  SRR4302534.3150782/1‑94 (MQ=60)

            AAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTA                                                                                  >  SRR4302534.4127035/1‑94 (MQ=60)

             AGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTAT                                                                                 >  SRR4302534.2926252/1‑94 (MQ=60)

             AGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTAT                                                                                 <  SRR4302534.23762/94‑1 (MQ=60)

             AGCAGGGCGAAGTAGCGATCCTGCAAACGAAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTAT                                                                                 >  SRR4302534.5635427/1‑94 (MQ=60)

               TAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCG                                                                               >  SRR4302534.3522753/1‑94 (MQ=60)

               CAGGGCGAAGTAGCGATCCTGCGAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCG                                                                               >  SRR4302534.4485039/1‑94 (MQ=60)

               CAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCG                                                                               >  SRR4302534.1490618/1‑94 (MQ=60)

               CAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCG                                                                               <  SRR4302534.3213198/94‑1 (MQ=60)

               CAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCG                                                                               >  SRR4302534.6416305/1‑94 (MQ=60)

               CAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCG                                                                               >  SRR4302534.548936/1‑94 (MQ=60)

                 GGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGT                                                                             <  SRR4302534.4438128/94‑1 (MQ=60)

                      AAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGAT                                                                        >  SRR4302534.3676079/1‑94 (MQ=60)

                      AAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGAT                                                                        >  SRR4302534.3024083/1‑94 (MQ=60)

                      AAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGAT                                                                        >  SRR4302534.5523506/1‑94 (MQ=60)

                       AGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATC                                                                       >  SRR4302534.3235518/1‑94 (MQ=60)

                          AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTC                                                                    >  SRR4302534.187538/1‑94 (MQ=60)

                          AGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTC                                                                    <  SRR4302534.2924551/94‑1 (MQ=60)

                           GCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCG                                                                   <  SRR4302534.106492/94‑1 (MQ=60)

                            CGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGG                                                                  >  SRR4302534.749054/1‑94 (MQ=60)

                            CGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGG                                                                  >  SRR4302534.5433247/1‑94 (MQ=60)

                              ATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAG                                                                <  SRR4302534.1055246/94‑1 (MQ=60)

                               TCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGC                                                               >  SRR4302534.6025235/1‑94 (MQ=60)

                                CCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCG                                                              <  SRR4302534.5768567/94‑1 (MQ=60)

                                 CTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGG                                                             <  SRR4302534.5563360/94‑1 (MQ=60)

                                 CTGCAAACGCAAGGATTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCCAGGGGCCGGCGCCGGCATTATCGGTGCGATCCTCGGAGCCG                                                             >  SRR4302534.2400758/1‑94 (MQ=60)

                                  TGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGC                                                            <  SRR4302534.2704297/94‑1 (MQ=60)

                                    CAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGC                                                          <  SRR4302534.364749/94‑1 (MQ=60)

                                    CAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGC                                                          >  SRR4302534.3631402/1‑94 (MQ=60)

                                    CAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGC                                                          >  SRR4302534.5885920/1‑94 (MQ=60)

                                     AAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCT                                                         >  SRR4302534.2071790/1‑94 (MQ=60)

                                     AAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCT                                                         >  SRR4302534.4425445/1‑94 (MQ=60)

                                     AAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCT                                                         <  SRR4302534.1743526/94‑1 (MQ=60)

                                     AAACGCAAGGCTTAACTCCGAGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGCGCGATCCTCGGAGCGGCGCT                                                         >  SRR4302534.1004001/1‑94 (MQ=60)

                                      AACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTT                                                        <  SRR4302534.252832/94‑1 (MQ=60)

                                      AACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTT                                                        >  SRR4302534.4880264/1‑94 (MQ=60)

                                      AACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTT                                                        <  SRR4302534.3349107/94‑1 (MQ=60)

                                      AACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGGGCGATCCTCGGAGCGGCGCTT                                                        >  SRR4302534.868615/1‑94 (MQ=60)

                                       ACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTG                                                       <  SRR4302534.142569/94‑1 (MQ=60)

                                       ACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTG                                                       >  SRR4302534.2667756/1‑94 (MQ=60)

                                       ACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTG                                                       <  SRR4302534.4251603/94‑1 (MQ=60)

                                       ACGCAAGGATTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTG                                                       <  SRR4302534.3775519/94‑1 (MQ=60)

                                        CGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGG                                                      <  SRR4302534.5773121/94‑1 (MQ=60)

                                        CGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGG                                                      >  SRR4302534.1259559/1‑94 (MQ=60)

                                         GCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGC                                                     <  SRR4302534.2647003/94‑1 (MQ=60)

                                          CAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCG                                                    >  SRR4302534.5093978/1‑94 (MQ=60)

                                           AAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGC                                                   >  SRR4302534.251046/1‑94 (MQ=60)

                                            AGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCC                                                  >  SRR4302534.5440015/1‑94 (MQ=60)

                                            AGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCC                                                  >  SRR4302534.98884/1‑94 (MQ=60)

                                             GGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCC                                                 >  SRR4302534.4989104/1‑94 (MQ=60)

                                             GGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCC                                                 >  SRR4302534.5097224/1‑94 (MQ=60)

                                             GGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCC                                                 >  SRR4302534.226918/1‑94 (MQ=60)

                                              GCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCT                                                >  SRR4302534.2767311/1‑94 (MQ=60)

                                              GCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCT                                                <  SRR4302534.470560/94‑1 (MQ=60)

                                               CTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTG                                               <  SRR4302534.5123867/94‑1 (MQ=60)

                                               CTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTG                                               >  SRR4302534.289814/1‑94 (MQ=60)

                                                TTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGC                                              >  SRR4302534.2534302/1‑94 (MQ=60)

                                                 TAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCT                                             >  SRR4302534.6068351/1‑94 (MQ=60)

                                                  AACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTT                                            >  SRR4302534.6570817/1‑94 (MQ=60)

                                                  AACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTT                                            >  SRR4302534.788998/1‑94 (MQ=60)

                                                  AACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTT                                            <  SRR4302534.5550208/94‑1 (MQ=60)

                                                  AACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTT                                            <  SRR4302534.1193754/94‑1 (MQ=60)

                                                   ACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTG                                           <  SRR4302534.5739256/94‑1 (MQ=60)

                                                   ACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTG                                           >  SRR4302534.3199736/1‑94 (MQ=60)

                                                   ACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCACCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTG                                           >  SRR4302534.1036477/1‑94 (MQ=60)

                                                      CCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCA                                        >  SRR4302534.2440953/1‑94 (MQ=60)

                                                         CGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCC                                     >  SRR4302534.3084454/1‑94 (MQ=60)

                                                          GACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCA                                    >  SRR4302534.3218811/1‑94 (MQ=60)

                                                           ACAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAG                                   >  SRR4302534.1732740/1‑94 (MQ=60)

                                                            CAAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGT                                  <  SRR4302534.4638520/94‑1 (MQ=60)

                                                            CAAATCATGATGGTCTTGATGGTGCAAGGGGCCGGCGCGGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGT                                  <  SRR4302534.5711746/94‑1 (MQ=60)

                                                             AAATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTT                                 >  SRR4302534.5935104/1‑94 (MQ=60)

                                                              AATCATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTA                                >  SRR4302534.2661858/1‑94 (MQ=60)

                                                                 CATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAAT                             >  SRR4302534.43567/1‑94 (MQ=60)

                                                                 CATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAAT                             <  SRR4302534.2379701/94‑1 (MQ=60)

                                                                 CATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAAT                             <  SRR4302534.2940403/94‑1 (MQ=60)

                                                                  ATGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCTGTTAAATA                            >  SRR4302534.1900885/1‑94 (MQ=60)

                                                                   TGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAA                           >  SRR4302534.6150738/1‑94 (MQ=60)

                                                                   TGATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAA                           <  SRR4302534.3037497/94‑1 (MQ=60)

                                                                    GATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAAT                          >  SRR4302534.4404470/1‑94 (MQ=60)

                                                                    GATGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAAT                          >  SRR4302534.321306/1‑94 (MQ=60)

                                                                      TGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCT                        >  SRR4302534.168848/1‑94 (MQ=60)

                                                                      TGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCT                        >  SRR4302534.2832980/1‑94 (MQ=60)

                                                                      TGGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGAGCCCTGCTTGCCAGCCAGTTAAATAATCT                        <  SRR4302534.4715482/94‑1 (MQ=60)

                                                                       GGTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTG                       >  SRR4302534.4097268/1‑94 (MQ=60)

                                                                        GTCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGA                      <  SRR4302534.2906917/94‑1 (MQ=60)

                                                                         TCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGAT                     <  SRR4302534.5524804/94‑1 (MQ=60)

                                                                         TCTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGAT                     <  SRR4302534.4464101/94‑1 (MQ=60)

                                                                          CTTTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATG                    <  SRR4302534.5234870/94‑1 (MQ=60)

                                                                            TTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCC                  >  SRR4302534.671918/1‑94 (MQ=60)

                                                                            TTATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCC                  >  SRR4302534.6311795/1‑94 (MQ=60)

                                                                             TATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCG                 <  SRR4302534.1684613/94‑1 (MQ=60)

                                                                              ATGGTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGA                <  SRR4302534.3462057/94‑1 (MQ=60)

                                                                              ATGGTGCAAGCGGCCGGCGCCGTAATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCCCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGA                <  SRR4302534.4255571/94‑1 (MQ=60)

                                                                               TGGGGCAAGCGGCCGGCGCCGGGATCATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGAT               <  SRR4302534.4370692/94‑1 (MQ=60)

                                                                                 GTGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAA             <  SRR4302534.1402646/94‑1 (MQ=60)

                                                                                  TGCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAAT            <  SRR4302534.1036504/94‑1 (MQ=60)

                                                                                   GCAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATC           <  SRR4302534.6196632/94‑1 (MQ=60)

                                                                                    CAAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCG          <  SRR4302534.5628089/94‑1 (MQ=60)

                                                                                     AAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGG         >  SRR4302534.95903/1‑94 (MQ=60)

                                                                                     AAGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGG         >  SRR4302534.2257282/1‑94 (MQ=60)

                                                                                      AGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGC        >  SRR4302534.1259336/1‑94 (MQ=60)

                                                                                      AGGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGC        >  SRR4302534.2236263/1‑94 (MQ=60)

                                                                                       GGGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCG       >  SRR4302534.2332516/1‑94 (MQ=60)

                                                                                        GGGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGT      >  SRR4302534.6637275/1‑94 (MQ=60)

                                                                                         GGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTC     >  SRR4302534.1012987/1‑94 (MQ=60)

                                                                                         GGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTC     <  SRR4302534.565894/94‑1 (MQ=60)

                                                                                         GGCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTC     <  SRR4302534.4415934/94‑1 (MQ=60)

                                                                                          GCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTCC    >  SRR4302534.275182/1‑94 (MQ=60)

                                                                                          GCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTCC    >  SRR4302534.4829458/1‑94 (MQ=60)

                                                                                          GCCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTCC    <  SRR4302534.889138/94‑1 (MQ=60)

                                                                                           CCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTCCT   >  SRR4302534.4300226/1‑94 (MQ=60)

                                                                                           CCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTCCT   <  SRR4302534.5420501/94‑1 (MQ=60)

                                                                                           CCGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTCCT   <  SRR4302534.5930528/94‑1 (MQ=60)

                                                                                            CGGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTCCTG  >  SRR4302534.1025637/1‑94 (MQ=60)

ATGGTAATGGAGAAGCAGGGCGAAGTAGCGATCCTGCAAACGCAAGGCTTAACTCCGCGACAAATCATGATGGTCTTTATGGTGCAAGGGGCCAGCGCCGGGATTATCGGTGCGATCCTCGGAGCGGCGCTTGGCGCCCTGCTTGCCAGCCAGTTAAATAATCTGATGCCGATAATCGGCGTCCTG  >  NC_000913/1175514‑1175699

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`