Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,192,497	A→G	L167P (CTG→CCG)	ycfB ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,192,497	0	A	G	100.0%	707.6 / NA	204	L167P (CTG→CCG)	ycfB	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (106/98); total (106/98)

Only 100 of 208 total aligned reads displayed.

CGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTG  >  NC_000913/1192408‑1192586

cGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGc                                                                                        >  2:1644430/1‑93 (MQ=255)

cGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGc                                                                                        >  1:4808965/1‑93 (MQ=255)

 ggTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCt                                                                                       >  2:1908103/1‑93 (MQ=255)

 ggTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCt                                                                                       >  1:1901934/1‑93 (MQ=255)

  gTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCtt                                                                                      <  2:184575/93‑1 (MQ=255)

   tAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTCCGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCttt                                                                                     <  1:90747/93‑1 (MQ=255)

   tAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCttt                                                                                     <  1:500538/93‑1 (MQ=255)

    agagTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTg                                                                                    <  1:4868150/93‑1 (MQ=255)

     gagTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTgc                                                                                   >  2:3034911/1‑93 (MQ=255)

     gagTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTgc                                                                                   >  2:4509857/1‑93 (MQ=255)

     gagTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTgc                                                                                   >  1:2691784/1‑93 (MQ=255)

     gagTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTgc                                                                                   <  2:5117575/93‑1 (MQ=255)

     aagTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTgc                                                                                   <  1:5411929/92‑1 (MQ=255)

      agTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTgcg                                                                                  >  2:3818027/1‑93 (MQ=255)

       gTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGGTTTTCCAGTTCGACGACCGGGAACGGGCGTTgcgc                                                                                 >  1:1174157/1‑93 (MQ=255)

        tCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCa                                                                                >  2:3501937/1‑93 (MQ=255)

          ttttttCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAAt                                                                              <  2:125297/93‑1 (MQ=255)

           tttttCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATc                                                                             <  1:5988719/93‑1 (MQ=255)

            ttttCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCt                                                                            >  1:6320703/1‑93 (MQ=255)

             tttCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTg                                                                           >  1:4926021/1‑93 (MQ=255)

              ttcttcGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGc                                                                          <  2:2702070/93‑1 (MQ=255)

               tcttcGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCt                                                                         <  2:3062881/93‑1 (MQ=255)

                 ttcGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCa                                                                       >  1:4291799/1‑93 (MQ=255)

                  tcGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGTTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCAt                                                                      <  1:5513437/93‑1 (MQ=255)

                  tcGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCAt                                                                      <  2:2827358/93‑1 (MQ=255)

                  tcGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCAt                                                                      <  1:2056741/93‑1 (MQ=255)

                   cgcgGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATg                                                                     <  1:1701966/93‑1 (MQ=255)

                        tGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGa                                                                <  2:579652/93‑1 (MQ=255)

                         gaccagaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAg                                                               >  1:329524/1‑93 (MQ=255)

                         gaccagaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCCGGAACGGGCCATGCGCAATCTGCTCATGGCTGAg                                                               >  1:2286296/1‑93 (MQ=255)

                            cagaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGt                                                            <  2:5304285/93‑1 (MQ=255)

                             agaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGta                                                           >  2:6312889/1‑93 (MQ=255)

                             agaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGta                                                           <  2:5091979/93‑1 (MQ=255)

                               accaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGtata                                                         <  1:969535/93‑1 (MQ=255)

                                ccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATaa                                                        >  2:739676/1‑93 (MQ=255)

                                 caAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATaaa                                                       >  2:4715984/1‑93 (MQ=255)

                                 caAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATaaa                                                       >  1:3107281/1‑93 (MQ=255)

                                 caAGATCTTCAGCAATCTTACGCACATGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATaaa                                                       <  2:6240293/93‑1 (MQ=255)

                                   aGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAgg                                                     >  1:4273554/1‑93 (MQ=255)

                                   aGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAgg                                                     >  1:3508931/1‑93 (MQ=255)

                                   aGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAgg                                                     <  1:3132884/93‑1 (MQ=255)

                                    gATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGa                                                    >  2:6398311/1‑93 (MQ=255)

                                    gATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGa                                                    >  1:6348524/1‑93 (MQ=255)

                                     aTCTTCATCAATCTTACGCACCTGCGGTTTTTCCAGTCCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGaa                                                   <  2:2364367/93‑1 (MQ=255)

                                     aTCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGaa                                                   <  2:5195069/93‑1 (MQ=255)

                                     aTCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGaa                                                   >  2:5911610/1‑93 (MQ=255)

                                     aTCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGaa                                                   <  2:5161090/93‑1 (MQ=255)

                                      tCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAg                                                  >  2:3551293/1‑93 (MQ=255)

                                       cTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGt                                                 <  2:2289063/93‑1 (MQ=255)

                                       cTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGt                                                 <  1:3459342/93‑1 (MQ=255)

                                        ttCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTa                                                >  1:402281/1‑93 (MQ=255)

                                          cAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGc                                              <  1:6133849/93‑1 (MQ=255)

                                           aGCAATCTTACGCACCTGCGGTTTTCCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGct                                             <  1:5484006/93‑1 (MQ=255)

                                            gCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGctc                                            >  1:1365292/1‑93 (MQ=255)

                                             cAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGctct                                           >  2:6110695/1‑93 (MQ=255)

                                              aaTCTTACGCACCTGCGGTTTTTCCAGTTCGCCGAGCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTg                                          <  2:2898254/93‑1 (MQ=255)

                                              aaTCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTg                                          <  1:6241629/93‑1 (MQ=255)

                                              aaTCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTg                                          >  2:4922886/1‑93 (MQ=255)

                                                tCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGt                                        <  1:855516/93‑1 (MQ=255)

                                                 cTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTc                                       >  1:2423365/1‑93 (MQ=255)

                                                  ttACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCt                                      >  2:4627432/1‑93 (MQ=255)

                                                  ttACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCt                                      >  2:3210039/1‑93 (MQ=255)

                                                  ttACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCt                                      >  1:3038231/1‑93 (MQ=255)

                                                  tcaCGCCCCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCt                                      <  2:2634221/91‑1 (MQ=255)

                                                   tACGCCCCTGCGGTTGTTCCAGTTCGCCGTCCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCtt                                     <  1:3175932/93‑1 (MQ=255)

                                                   tACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCtt                                     <  2:2053876/93‑1 (MQ=255)

                                                    aCGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCttt                                    >  1:3148338/1‑93 (MQ=255)

                                                     cGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTa                                   <  2:3017344/93‑1 (MQ=255)

                                                     cGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTa                                   <  2:2382927/93‑1 (MQ=255)

                                                     cGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTa                                   >  2:4088534/1‑93 (MQ=255)

                                                      gCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAt                                  >  2:889586/1‑93 (MQ=255)

                                                      gCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAt                                  >  1:5622817/1‑93 (MQ=255)

                                                      gCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAt                                  >  2:3136892/1‑93 (MQ=255)

                                                       cACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAtt                                 >  1:402944/1‑93 (MQ=255)

                                                       cACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAtt                                 >  1:209743/1‑93 (MQ=255)

                                                       cACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAtt                                 <  2:3337266/93‑1 (MQ=255)

                                                       cACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAtt                                 >  1:3017534/1‑93 (MQ=255)

                                                        aCCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTg                                >  1:1454834/1‑93 (MQ=255)

                                                        aCCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTg                                >  1:2888420/1‑93 (MQ=255)

                                                          cTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCt                              <  2:477755/93‑1 (MQ=255)

                                                           tGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTg                             <  1:1879344/93‑1 (MQ=255)

                                                               gTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCa                         <  1:4227854/93‑1 (MQ=255)

                                                                  tttCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGAc                      <  2:6028075/93‑1 (MQ=255)

                                                                  tttCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGAc                      >  1:4213027/1‑93 (MQ=255)

                                                                     ccAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCAc                   <  2:1622789/93‑1 (MQ=255)

                                                                      cAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGAACACg                  >  1:3701238/1‑93 (MQ=255)

                                                                       aGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTCTAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgc                 <  2:3438044/93‑1 (MQ=255)

                                                                       aGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgc                 <  1:3380818/93‑1 (MQ=255)

                                                                        gTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgca                <  2:5032067/93‑1 (MQ=255)

                                                                        gTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgca                >  2:411116/1‑93 (MQ=255)

                                                                         ttCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgcag               <  2:4177083/93‑1 (MQ=255)

                                                                           cGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgcagca             <  2:5462036/93‑1 (MQ=255)

                                                                               gACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcg         >  2:240431/1‑93 (MQ=255)

                                                                                aCCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcgg        >  1:2608031/1‑93 (MQ=255)

                                                                                aCCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcgg        >  1:1584207/1‑93 (MQ=255)

                                                                                 ccGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcggc       >  1:2118396/1‑93 (MQ=255)

                                                                                 ccGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcggc       >  2:3486528/1‑93 (MQ=255)

                                                                                  cGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGct      >  1:385993/1‑93 (MQ=255)

                                                                                   gggAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGctc     >  2:800238/1‑93 (MQ=255)

                                                                                    ggAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGctct    <  1:4551496/93‑1 (MQ=255)

CGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTG  >  NC_000913/1192408‑1192586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 18 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCAT  >  NC_000913/1192406‑1192590

GCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGG                                                                                             <  SRR4302534.6650783/94‑1 (MQ=60)

 CCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGC                                                                                            >  SRR4302534.5857279/1‑94 (MQ=60)

 CCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGC                                                                                            >  SRR4302534.4939515/1‑94 (MQ=60)

  CGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCT                                                                                           >  SRR4302534.311365/1‑94 (MQ=60)

  CGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCT                                                                                           <  SRR4302534.2746769/94‑1 (MQ=60)

  CGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCT                                                                                           >  SRR4302534.1951536/1‑94 (MQ=60)

    GTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTT                                                                                         >  SRR4302534.3079487/1‑94 (MQ=60)

     TAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTCCGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTG                                                                                        <  SRR4302534.93171/94‑1 (MQ=60)

     TAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTG                                                                                        >  SRR4302534.3250395/1‑94 (MQ=60)

     TAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTG                                                                                        >  SRR4302534.3514777/1‑94 (MQ=60)

     TAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTG                                                                                        <  SRR4302534.513009/94‑1 (MQ=60)

      AGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGC                                                                                       >  SRR4302534.2762915/1‑94 (MQ=60)

      AGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGC                                                                                       <  SRR4302534.5000206/94‑1 (MQ=60)

       AAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCG                                                                                      <  SRR4302534.5557515/94‑1 (MQ=60)

        AGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGC                                                                                     >  SRR4302534.4986713/1‑94 (MQ=60)

        AGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGGTTTTCCAGTTCGACGACCGGGAACGGGCGTTGCGC                                                                                     >  SRR4302534.1205023/1‑94 (MQ=60)

         GTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCA                                                                                    >  SRR4302534.2716445/1‑94 (MQ=60)

            TTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATC                                                                                 <  SRR4302534.5036853/94‑1 (MQ=60)

             TTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCT                                                                                >  SRR4302534.6491509/1‑94 (MQ=60)

             TTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCT                                                                                <  SRR4302534.6151411/94‑1 (MQ=60)

              TTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTG                                                                               >  SRR4302534.5059537/1‑94 (MQ=60)

               TTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGC                                                                              >  SRR4302534.4156298/1‑94 (MQ=60)

                  CTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCA                                                                           >  SRR4302534.4408078/1‑94 (MQ=60)

                  CTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCA                                                                           >  SRR4302534.1537324/1‑94 (MQ=60)

                    TCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGTTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATG                                                                         <  SRR4302534.5662172/94‑1 (MQ=60)

                    TCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATG                                                                         <  SRR4302534.2110469/94‑1 (MQ=60)

                     CGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGG                                                                        >  SRR4302534.3398969/1‑94 (MQ=60)

                     CGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGG                                                                        <  SRR4302534.1746186/94‑1 (MQ=60)

                      GGGGTGACCAGACCAAGATCTTCAGCAATCTTACGCCCCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGC                                                                       <  SRR4302534.3825983/94‑1 (MQ=60)

                       CGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCT                                                                      <  SRR4302534.6499840/94‑1 (MQ=60)

                        GGTGATCAGACCAAGATCTTCAGCAACCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTG                                                                     <  SRR4302534.436632/94‑1 (MQ=60)

                        GGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTG                                                                     >  SRR4302534.4400879/1‑94 (MQ=60)

                          TGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAG                                                                   >  SRR4302534.337989/1‑94 (MQ=60)

                          TGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCCGGAACGGGCCATGCGCAATCTGCTCATGGCTGAG                                                                   >  SRR4302534.2346969/1‑94 (MQ=60)

                           GACCAGACCAAGATCTTCGGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGC                                                                  <  SRR4302534.5066092/94‑1 (MQ=60)

                              CAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTA                                                               <  SRR4302534.631766/94‑1 (MQ=60)

                              CAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTA                                                               <  SRR4302534.181088/94‑1 (MQ=60)

                               AGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGGTCGCCGACCCGGAACGGGCTTTGCGCGATCTGCTCATGGCTGAGgctat                                                              >  SRR4302534.4888519/1‑89 (MQ=60)

                                 ACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAA                                                            <  SRR4302534.994234/94‑1 (MQ=60)

                                 ACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAA                                                            >  SRR4302534.2163216/1‑94 (MQ=60)

                                  CCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAA                                                           >  SRR4302534.5354354/1‑94 (MQ=60)

                                  CCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAA                                                           >  SRR4302534.3188993/1‑94 (MQ=60)

                                    AAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGG                                                         >  SRR4302534.4389124/1‑94 (MQ=60)

                                    AAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGG                                                         >  SRR4302534.3603329/1‑94 (MQ=60)

                                     AGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGA                                                        <  SRR4302534.3215235/94‑1 (MQ=60)

                                     AGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGA                                                        >  SRR4302534.6519979/1‑94 (MQ=60)

                                       ATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAG                                                      <  SRR4302534.2963171/94‑1 (MQ=60)

                                        TCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGT                                                     <  SRR4302534.5643923/94‑1 (MQ=60)

                                        TCTTCAGCAACCTCACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCACGGCTGAGCGTAGAAAGGAAGT                                                     <  SRR4302534.6463564/94‑1 (MQ=60)

                                         CTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTA                                                    <  SRR4302534.3552327/94‑1 (MQ=60)

                                         CTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTA                                                    >  SRR4302534.412564/1‑94 (MQ=60)

                                         CTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTA                                                    <  SRR4302534.412599/94‑1 (MQ=60)

                                         CTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTA                                                    <  SRR4302534.4334784/94‑1 (MQ=60)

                                          TTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAG                                                   <  SRR4302534.2386951/94‑1 (MQ=60)

                                            CAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCT                                                 <  SRR4302534.6300694/94‑1 (MQ=60)

                                            CAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCT                                                 >  SRR4302534.1404835/1‑94 (MQ=60)

                                             AGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTC                                                >  SRR4302534.1401251/1‑94 (MQ=60)

                                             AGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTC                                                <  SRR4302534.5524844/94‑1 (MQ=60)

                                             AGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTC                                                >  SRR4302534.3230542/1‑94 (MQ=60)

                                             AGCAATCTTACGCACCTGCGGTTTTCCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTC                                                <  SRR4302534.5631917/94‑1 (MQ=60)

                                                AATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGG                                             <  SRR4302534.6410976/94‑1 (MQ=60)

                                                 ATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGT                                            >  SRR4302534.6174107/1‑94 (MQ=60)

                                                 ATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGT                                            >  SRR4302534.4891589/1‑94 (MQ=60)

                                                  TCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTC                                           >  SRR4302534.2487812/1‑94 (MQ=60)

                                                  TCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTC                                           >  SRR4302534.1708459/1‑94 (MQ=60)

                                                  TCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTC                                           <  SRR4302534.877104/94‑1 (MQ=60)

                                                   CTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCT                                          >  SRR4302534.3117895/1‑94 (MQ=60)

                                                   CTGACGCGCCTGCGGTTTTTCCAGTTCGTCGCCCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAATTAGCTCTGGTCT                                          <  SRR4302534.1526856/94‑1 (MQ=60)

                                                    TCACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTT                                         <  SRR4302534.570646/94‑1 (MQ=60)

                                                     TACGCCCCTGCGGTTGTTCCAGTTCGCCGTCCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTT                                        <  SRR4302534.3259778/94‑1 (MQ=60)

                                                     TACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTT                                        >  SRR4302534.3231157/1‑94 (MQ=60)

                                                      ACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTA                                       <  SRR4302534.6646831/94‑1 (MQ=60)

                                                       CGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAT                                      >  SRR4302534.5774974/1‑94 (MQ=60)

                                                        GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                     >  SRR4302534.413244/1‑94 (MQ=60)

                                                        GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                     <  SRR4302534.1941593/94‑1 (MQ=60)

                                                        GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                     >  SRR4302534.215251/1‑94 (MQ=60)

                                                        GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                     >  SRR4302534.3096529/1‑94 (MQ=60)

                                                         CACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTG                                    >  SRR4302534.2964205/1‑94 (MQ=60)

                                                         CACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTG                                    >  SRR4302534.3731376/1‑94 (MQ=60)

                                                         CACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTG                                    >  SRR4302534.1493101/1‑94 (MQ=60)

                                                          ACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGC                                   >  SRR4302534.3716890/1‑94 (MQ=60)

                                                             TGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGT                                <  SRR4302534.1928287/94‑1 (MQ=60)

                                                             CGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGT                                <  SRR4302534.967056/94‑1 (MQ=60)

                                                                 GTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAG                            <  SRR4302534.4341788/94‑1 (MQ=60)

                                                                   TTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGAC                          >  SRR4302534.4326657/1‑94 (MQ=60)

                                                                     TTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCA                        <  SRR4302534.4009353/94‑1 (MQ=60)

                                                                      TCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCAC                       <  SRR4302534.5590221/94‑1 (MQ=60)

                                                                       CCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACG                      >  SRR4302534.2151272/1‑94 (MQ=60)

                                                                       CCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGAACACG                      >  SRR4302534.3800729/1‑94 (MQ=60)

                                                                         AGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCA                    >  SRR4302534.4435383/1‑94 (MQ=60)

                                                                         AGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCA                    >  SRR4302534.207200/1‑94 (MQ=60)

                                                                         AGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCA                    >  SRR4302534.320931/1‑94 (MQ=60)

                                                                         AGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCA                    <  SRR4302534.3471445/94‑1 (MQ=60)

                                                                             CGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAG                <  SRR4302534.3259885/94‑1 (MQ=60)

                                                                             CGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAG                <  SRR4302534.914213/94‑1 (MQ=60)

                                                                                CGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCG             <  SRR4302534.227029/94‑1 (MQ=60)

                                                                                CGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCG             <  SRR4302534.3583523/94‑1 (MQ=60)

                                                                                 GACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGG            >  SRR4302534.1625647/1‑94 (MQ=60)

                                                                                 GACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGG            >  SRR4302534.2677042/1‑94 (MQ=60)

                                                                                  ACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGC           >  SRR4302534.2174156/1‑94 (MQ=60)

                                                                                   CCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGGCCACGCAGCAGGCGGCT          <  SRR4302534.2588609/94‑1 (MQ=60)

                                                                                   CCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCT          >  SRR4302534.395871/1‑94 (MQ=60)

                                                                                    CGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTC         >  SRR4302534.3183303/1‑94 (MQ=60)

                                                                                      GGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTT       <  SRR4302534.4674870/94‑1 (MQ=60)

                                                                                       GAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTG      <  SRR4302534.1223381/94‑1 (MQ=60)

                                                                                        AACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGC     >  SRR4302534.5031278/1‑94 (MQ=60)

                                                                                        AACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGC     >  SRR4302534.1567878/1‑94 (MQ=60)

                                                                                        AACGGGCTTGGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGC     >  SRR4302534.6469906/1‑94 (MQ=60)

                                                                                         ACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCC    <  SRR4302534.5494373/94‑1 (MQ=60)

                                                                                          CGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCA   >  SRR4302534.5596304/1‑94 (MQ=60)

                                                                                           GGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCAT  >  SRR4302534.3964889/1‑94 (MQ=60)

                                                                                           GGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCAT  <  SRR4302534.3114129/94‑1 (MQ=60)

                                                                                           GGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCAT  >  SRR4302534.6246887/1‑94 (MQ=60)

GCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCAT  >  NC_000913/1192406‑1192590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`