Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,199,211 |
T→C |
V273V (GTA→GTG) |
intE ← |
prophage e14 integrase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,199,211 | 0 | T | C | 99.6%
| 913.6
/ ‑5.0
| 270 | V273V (GTA→GTG) | intE | prophage e14 integrase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (132/136); total (133/137) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.30e-01 |
Only 100 of 287 total aligned reads displayed.
GGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATG > NC_000913/1199121‑1199300
|
ggCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccac > 2:6696856/1‑93 (MQ=255)
ggCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccac > 2:4040314/1‑93 (MQ=255)
ggCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccac < 2:3817519/93‑1 (MQ=255)
gCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccact < 1:7150877/93‑1 (MQ=255)
gCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccact < 2:4718636/93‑1 (MQ=255)
cTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCATCGGGccacta < 1:792435/93‑1 (MQ=255)
cTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccacta < 1:174751/93‑1 (MQ=255)
tttAACCTGCGCTGCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATTCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCcactac < 1:1959423/93‑1 (MQ=255)
tttAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCcactac > 2:6047844/1‑93 (MQ=255)
tAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACAt < 2:7587591/93‑1 (MQ=255)
tAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACAt < 2:1251336/93‑1 (MQ=255)
aaCCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATc < 1:3110823/93‑1 (MQ=255)
aCCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATcg > 2:2399695/1‑93 (MQ=255)
aCCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATcg < 1:6080677/93‑1 (MQ=255)
ccTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATcgc > 1:4006062/1‑93 (MQ=255)
tGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATcgcga > 1:6586427/1‑92 (MQ=255)
tGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGt > 1:3199361/1‑93 (MQ=255)
tGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGt > 1:3387123/1‑93 (MQ=255)
tGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGt > 1:810872/1‑93 (MQ=255)
tGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGt > 1:1538937/1‑93 (MQ=255)
cgcTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTaa < 1:3804622/93‑1 (MQ=255)
gcTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTTCATCGCGTaaa < 2:6808268/93‑1 (MQ=255)
cTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAAc > 2:7127107/1‑93 (MQ=255)
tCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACt < 2:877705/93‑1 (MQ=255)
tCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACt < 1:7273261/93‑1 (MQ=255)
tCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACt > 1:5273715/1‑93 (MQ=255)
gcgcTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCa < 2:3404388/93‑1 (MQ=255)
gcgcTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCa < 2:5054945/93‑1 (MQ=255)
gcgcTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCa < 1:4754116/93‑1 (MQ=255)
gcgcTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAAATCCa > 1:11219/1‑93 (MQ=255)
gcTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGt > 1:654860/1‑93 (MQ=255)
ctctGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGtt > 1:5534468/1‑93 (MQ=255)
ctGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTaa < 1:7577674/93‑1 (MQ=255)
ctGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTaa > 2:5422588/1‑93 (MQ=255)
tGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAAt > 2:51852/1‑93 (MQ=255)
tGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAAt > 1:6213341/1‑93 (MQ=255)
cTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCg < 1:3014046/93‑1 (MQ=255)
ttGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGc < 1:6307274/93‑1 (MQ=255)
tgtgAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCa > 1:1352147/1‑93 (MQ=255)
tgAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCAtt < 1:7071167/93‑1 (MQ=255)
tgAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCAtt < 1:3505217/93‑1 (MQ=255)
aaGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGa < 2:2542941/93‑1 (MQ=255)
aGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAg < 1:6266313/93‑1 (MQ=255)
aGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAg > 2:4177730/1‑93 (MQ=255)
gTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAgg < 2:595927/93‑1 (MQ=255)
gTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAgg > 2:8199513/1‑93 (MQ=255)
ttGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGc < 1:6759195/93‑1 (MQ=255)
tGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCg < 2:3331436/93‑1 (MQ=255)
gAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGa < 1:2799007/93‑1 (MQ=255)
aaCGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGaa < 1:4973400/93‑1 (MQ=255)
aaCGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGaa < 1:4802999/93‑1 (MQ=255)
acaaaaaaaaTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCCGGCCACTACATCGTGTAAACTCCAGTTAATCGCATTGAGGCGAag < 2:7977556/90‑1 (MQ=255)
aCGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGGGTAAAATCCAGTTAATAGCATTGAGGCCaaa > 2:4225476/1‑92 (MQ=255)
cGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAaga < 1:8259553/93‑1 (MQ=255)
cGAAAAAAATGCACCAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAaga < 1:643800/93‑1 (MQ=255)
agAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAaga < 1:5832206/92‑1 (MQ=255)
gAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAagag > 2:6883759/1‑93 (MQ=255)
aaaaTGCACTAAGTATGCACTGACTGCATAGTCACTGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAag < 1:6896578/93‑1 (MQ=255)
aaaTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAaga < 1:4153581/93‑1 (MQ=255)
aaTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAagag < 1:443229/93‑1 (MQ=255)
aaTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAagag > 2:1476732/1‑93 (MQ=255)
aTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAgg > 1:7357016/1‑93 (MQ=255)
aTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAgg < 2:8457237/93‑1 (MQ=255)
tGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGa < 2:7392232/93‑1 (MQ=255)
tGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGa < 1:4306426/93‑1 (MQ=255)
gCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGaa < 1:6999629/93‑1 (MQ=255)
gCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGaa > 2:4054854/1‑93 (MQ=255)
cACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAGCTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAt < 2:3496536/93‑1 (MQ=255)
aCTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAtt > 2:7691425/1‑93 (MQ=255)
aCTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAtt > 2:8337550/1‑93 (MQ=255)
aCTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCAACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAtt > 2:443018/1‑93 (MQ=255)
cTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTg > 1:8823166/1‑93 (MQ=255)
cTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTg > 2:6602113/1‑93 (MQ=255)
tAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGc < 1:2924085/93‑1 (MQ=255)
aTGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAttt < 1:6637076/93‑1 (MQ=255)
tGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATAGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGGATTGCAAtttt < 2:7798034/93‑1 (MQ=255)
actgactgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCt > 1:6652072/1‑93 (MQ=255)
ctgactgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTc > 2:4245120/1‑93 (MQ=255)
ctgactgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTc < 2:1797377/93‑1 (MQ=255)
tgactgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGACGAGAAAGAGGAATTGCGATTTTGCTcc > 2:6408046/1‑93 (MQ=255)
tgactgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTcc < 1:2405847/93‑1 (MQ=255)
gactgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTccc < 1:1602443/93‑1 (MQ=255)
gactgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTccc < 1:2194655/93‑1 (MQ=255)
actgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCg < 1:5140587/93‑1 (MQ=255)
cATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCt > 1:7516260/1‑93 (MQ=255)
aTAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCtt < 2:5935052/93‑1 (MQ=255)
aTAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCtt < 2:3154541/93‑1 (MQ=255)
aTAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCtt > 2:2247885/1‑93 (MQ=255)
aTAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCtt < 1:2612337/93‑1 (MQ=255)
aTAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCtt > 2:4025716/1‑93 (MQ=255)
tAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCttt < 1:2476471/93‑1 (MQ=255)
gTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTc > 2:3911596/1‑93 (MQ=255)
cACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCt < 1:3571465/93‑1 (MQ=255)
aCGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTg > 2:1870536/1‑93 (MQ=255)
cGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGa < 2:6307462/93‑1 (MQ=255)
cAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATg > 2:4827306/1‑93 (MQ=255)
cAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATg < 1:8686042/93‑1 (MQ=255)
cGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACa > 1:8581682/1‑93 (MQ=255)
gggCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACAt > 1:7693174/1‑93 (MQ=255)
ggCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATg < 2:2983921/93‑1 (MQ=255)
|
GGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATG > NC_000913/1199121‑1199300
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGA > NC_000913/1199120‑1199304
|
TGGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCAC < SRR4302541.57227/94‑1 (MQ=60)
TGGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCAC < SRR4302541.3021202/94‑1 (MQ=60)
GCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTA < SRR4302541.7227105/94‑1 (MQ=60)
CTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCATCGGGCCACTAC < SRR4302541.799759/94‑1 (MQ=60)
CTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTAC < SRR4302541.176056/94‑1 (MQ=60)
TTTAACCTGCGCTGCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATTCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACA < SRR4302541.1978312/94‑1 (MQ=60)
TTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACAT < SRR4302541.7953024/94‑1 (MQ=60)
TTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACAT < SRR4302541.655871/94‑1 (MQ=60)
TAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCTCTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATC < SRR4302541.8279455/94‑1 (MQ=60)
TAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATC > SRR4302541.2868054/1‑94 (MQ=60)
TAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATC < SRR4302541.4868111/94‑1 (MQ=60)
AACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCG < SRR4302541.3142318/94‑1 (MQ=60)
AACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCG > SRR4302541.5269248/1‑94 (MQ=60)
AACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCG > SRR4302541.6691950/1‑94 (MQ=60)
ACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGC < SRR4302541.6142749/94‑1 (MQ=60)
ACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGC > SRR4302541.4045696/1‑94 (MQ=60)
CCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCG > SRR4302541.8484140/1‑94 (MQ=60)
CTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGT > SRR4302541.3231682/1‑94 (MQ=60)
CTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGT > SRR4302541.1554400/1‑94 (MQ=60)
CTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGT > SRR4302541.3420902/1‑94 (MQ=60)
CTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGT > SRR4302541.818292/1‑94 (MQ=60)
CTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGA > SRR4302541.6653850/1‑94 (MQ=60)
CGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAA > SRR4302541.8312190/1‑94 (MQ=60)
CGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAA < SRR4302541.3842922/94‑1 (MQ=60)
CTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACT > SRR4302541.1557722/1‑94 (MQ=60)
CTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACT > SRR4302541.5328037/1‑94 (MQ=60)
CTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACT < SRR4302541.3558501/94‑1 (MQ=60)
CTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACT < SRR4302541.3558502/94‑1 (MQ=60)
CTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACT > SRR4302541.7610984/1‑94 (MQ=60)
TCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTC > SRR4302541.1732456/1‑94 (MQ=60)
TCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTC < SRR4302541.7350856/94‑1 (MQ=60)
CCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCC < SRR4302541.418868/94‑1 (MQ=60)
CCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCC > SRR4302541.4833768/1‑94 (MQ=60)
CCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCC < SRR4302541.8015012/94‑1 (MQ=60)
CCGCGCTCTGCTTGTGAAATTTAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCC < SRR4302541.6527014/94‑1 (MQ=60)
CGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCA < SRR4302541.6649195/94‑1 (MQ=60)
CGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAAATCCA > SRR4302541.11291/1‑94 (MQ=60)
GCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAG < SRR4302541.4802686/94‑1 (MQ=60)
CGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGT > SRR4302541.661039/1‑94 (MQ=60)
GCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTT > SRR4302541.5591120/1‑94 (MQ=60)
CTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTA > SRR4302541.6717694/1‑94 (MQ=60)
CTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTA > SRR4302541.6717696/1‑94 (MQ=60)
TCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAA > SRR4302541.4319971/1‑94 (MQ=60)
TCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAA > SRR4302541.3355355/1‑94 (MQ=60)
CTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAAT < SRR4302541.7658643/94‑1 (MQ=60)
CTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAAT > SRR4302541.264089/1‑94 (MQ=60)
CTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAAT > SRR4302541.8916508/1‑94 (MQ=60)
CTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAAT > SRR4302541.7185011/1‑94 (MQ=60)
CTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAAT > SRR4302541.6276837/1‑94 (MQ=60)
TGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATC < SRR4302541.3528860/94‑1 (MQ=60)
GCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCG < SRR4302541.1747426/94‑1 (MQ=60)
CTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGC > SRR4302541.3001160/1‑94 (MQ=60)
CTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGC < SRR4302541.3044467/94‑1 (MQ=60)
TTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCA < SRR4302541.6371752/94‑1 (MQ=60)
TTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCA > SRR4302541.6449033/1‑94 (MQ=60)
TTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCA > SRR4302541.1365509/1‑94 (MQ=60)
TTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACGGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCA < SRR4302541.3859305/94‑1 (MQ=60)
GTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATT < SRR4302541.3130203/94‑1 (MQ=60)
TGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTG < SRR4302541.7146366/94‑1 (MQ=60)
TGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTG > SRR4302541.80264/1‑94 (MQ=60)
TGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTG < SRR4302541.3540419/94‑1 (MQ=60)
AGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCCTTGAGG > SRR4302541.7357913/1‑94 (MQ=60)
AGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGG < SRR4302541.6330301/94‑1 (MQ=60)
AGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGG < SRR4302541.6371627/94‑1 (MQ=60)
AGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGG < SRR4302541.6777802/94‑1 (MQ=60)
AGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGG < SRR4302541.3613641/94‑1 (MQ=60)
TTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCG < SRR4302541.6831480/94‑1 (MQ=60)
TTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCG > SRR4302541.4041946/1‑94 (MQ=60)
GAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAA < SRR4302541.2827302/94‑1 (MQ=60)
GAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAA < SRR4302541.2827301/94‑1 (MQ=60)
AACGAAAAAAATGCACTAAGTATGCGCTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAG < SRR4302541.3044543/94‑1 (MQ=60)
AACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAG < SRR4302541.4851991/94‑1 (MQ=60)
AACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAG < SRR4302541.5024365/94‑1 (MQ=60)
CGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAG < SRR4302541.5891516/94‑1 (MQ=60)
CGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAG < SRR4302541.8349488/94‑1 (MQ=60)
CGAAAAAAATGCACCAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAG < SRR4302541.649880/94‑1 (MQ=60)
AGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAG < SRR4302541.2284100/94‑1 (MQ=60)
AGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAG < SRR4302541.5891517/94‑1 (MQ=60)
AAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAA < SRR4302541.3191959/94‑1 (MQ=60)
AAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAG < SRR4302541.5629258/94‑1 (MQ=60)
AAAATGCACTAAGTATGCACTGACTGCATAGTCACTGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGA < SRR4302541.6970171/94‑1 (MQ=60)
AAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAG > SRR4302541.4083584/1‑94 (MQ=60)
AAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAG < SRR4302541.4194664/94‑1 (MQ=60)
AAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAG > SRR4302541.7298250/1‑94 (MQ=60)
AAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAG < SRR4302541.6368839/94‑1 (MQ=60)
AATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGG < SRR4302541.6395401/94‑1 (MQ=60)
AATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGG < SRR4302541.447400/94‑1 (MQ=60)
AATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGG > SRR4302541.7435623/1‑94 (MQ=60)
AATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGG > SRR4302541.7970325/1‑94 (MQ=60)
ATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGTGGA < SRR4302541.3638040/94‑1 (MQ=60)
TGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAA < SRR4302541.741761/94‑1 (MQ=60)
TGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAA < SRR4302541.4349431/94‑1 (MQ=60)
AGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAA < SRR4302541.4429930/94‑1 (MQ=60)
GCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAT < SRR4302541.7074127/94‑1 (MQ=60)
GCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAAT > SRR4302541.7715848/1‑94 (MQ=60)
CACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATT > SRR4302541.1577167/1‑94 (MQ=60)
ACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTG > SRR4302541.8917323/1‑94 (MQ=60)
ACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTG > SRR4302541.8917324/1‑94 (MQ=60)
ACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTG > SRR4302541.177862/1‑94 (MQ=60)
CTAAGTATGCACTGACTGCATAGTCACGGCATCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGC > SRR4302541.7493214/1‑94 (MQ=60)
CTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGC > SRR4302541.6206380/1‑94 (MQ=60)
CTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGC < SRR4302541.299351/94‑1 (MQ=60)
CTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGC < SRR4302541.6672402/94‑1 (MQ=60)
TAAGTATGCACTGACTGCATAGTCACTGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCG < SRR4302541.4945723/94‑1 (MQ=60)
TAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCG < SRR4302541.2229210/94‑1 (MQ=60)
TAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCG > SRR4302541.7159444/1‑94 (MQ=60)
TAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCG < SRR4302541.2953491/94‑1 (MQ=60)
AAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGA > SRR4302541.8745304/1‑94 (MQ=60)
AGTATGCATTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAT < SRR4302541.1477624/94‑1 (MQ=60)
AGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAT < SRR4302541.6306070/94‑1 (MQ=60)
AGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAT > SRR4302541.5389808/1‑94 (MQ=60)
AGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAT > SRR4302541.7592606/1‑94 (MQ=60)
AGTATCCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAT < SRR4302541.1477623/94‑1 (MQ=60)
TATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTT > SRR4302541.2135530/1‑94 (MQ=60)
TATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTT > SRR4302541.7139576/1‑94 (MQ=60)
ATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTT < SRR4302541.6705127/94‑1 (MQ=60)
ATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTT < SRR4302541.5917417/94‑1 (MQ=60)
TGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTG < SRR4302541.6936395/94‑1 (MQ=60)
GCACTGACTGCATAGGCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGC < SRR4302541.8704437/94‑1 (MQ=60)
CACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTTCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCT > SRR4302541.704142/1‑94 (MQ=60)
CACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCT > SRR4302541.6720315/1‑94 (MQ=60)
ACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTC > SRR4302541.5067962/1‑94 (MQ=60)
ACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTC > SRR4302541.4198115/1‑94 (MQ=60)
TGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCC < SRR4302541.2429486/94‑1 (MQ=60)
TGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCC > SRR4302541.2512691/1‑94 (MQ=60)
GACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCG > SRR4302541.7064592/1‑94 (MQ=60)
GACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCG < SRR4302541.2215886/94‑1 (MQ=60)
GACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCG < SRR4302541.1618387/94‑1 (MQ=60)
GACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCG > SRR4302541.5927171/1‑94 (MQ=60)
ACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGG < SRR4302541.5193457/94‑1 (MQ=60)
CTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGT < SRR4302541.7117768/94‑1 (MQ=60)
CTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGT < SRR4302541.7711509/94‑1 (MQ=60)
TGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTC < SRR4302541.3364702/94‑1 (MQ=60)
GCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCT < SRR4302541.4616957/94‑1 (MQ=60)
GCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCT > SRR4302541.7596583/1‑94 (MQ=60)
ATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTT < SRR4302541.4371501/94‑1 (MQ=60)
ATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTT > SRR4302541.7235552/1‑94 (MQ=60)
ATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTT < SRR4302541.2638446/94‑1 (MQ=60)
ATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAAGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTT > SRR4302541.6619001/1‑94 (MQ=60)
TAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTT < SRR4302541.2501291/94‑1 (MQ=60)
TAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTT > SRR4302541.133814/1‑94 (MQ=60)
TAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTT < SRR4302541.2501292/94‑1 (MQ=60)
TCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGACGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCT > SRR4302541.5515018/1‑94 (MQ=60)
TCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCT < SRR4302541.1765730/94‑1 (MQ=60)
TCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCT > SRR4302541.4718424/1‑94 (MQ=60)
CACTGCAGGGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTG < SRR4302541.5123645/94‑1 (MQ=60)
CACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTG < SRR4302541.3607639/94‑1 (MQ=60)
CACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTG < SRR4302541.2795080/94‑1 (MQ=60)
ACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGA < SRR4302541.6921772/94‑1 (MQ=60)
GGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAAT < SRR4302541.5225519/94‑1 (MQ=60)
CAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGA < SRR4302541.8778989/94‑1 (MQ=60)
AGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGAC > SRR4302541.6290619/1‑94 (MQ=60)
GCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACA < SRR4302541.2454657/94‑1 (MQ=60)
GCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACA > SRR4302541.8403994/1‑94 (MQ=60)
GCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACA > SRR4302541.8673811/1‑94 (MQ=60)
CGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACAT > SRR4302541.7774981/1‑94 (MQ=60)
GGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATG > SRR4302541.2041231/1‑94 (MQ=60)
GGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGA > SRR4302541.6358026/1‑94 (MQ=60)
GGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGA < SRR4302541.3195269/94‑1 (MQ=60)
GCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAA > SRR4302541.1936419/1‑94 (MQ=60)
CACTACATCGCGTAAACTCTAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGA > SRR4302541.5047600/1‑94 (MQ=60)
CACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGA > SRR4302541.4955354/1‑94 (MQ=60)
CACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGA > SRR4302541.3145364/1‑94 (MQ=60)
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TGGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGA > NC_000913/1199120‑1199304
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
