Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,199,211 |
T→C |
V273V (GTA→GTG) |
intE ← |
prophage e14 integrase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,199,211 | 0 | T | C | 100.0%
| 793.5
/ NA
| 226 | V273V (GTA→GTG) | intE | prophage e14 integrase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/115); total (111/115) |
Only 100 of 239 total aligned reads displayed.
GGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATG > NC_000913/1199121‑1199300
|
ggCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccac < 2:5812219/93‑1 (MQ=255)
gCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccact < 2:5381935/93‑1 (MQ=255)
cTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccacta > 1:5700235/1‑93 (MQ=255)
cTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccacta < 2:2892506/93‑1 (MQ=255)
cTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccacta < 1:2630404/93‑1 (MQ=255)
cTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGccacta < 2:1320469/93‑1 (MQ=255)
ttAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACa < 1:2812642/93‑1 (MQ=255)
ttAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACa > 2:4937593/1‑93 (MQ=255)
tAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACAt < 2:3366646/93‑1 (MQ=255)
aaCCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATc > 1:1612767/1‑93 (MQ=255)
ccTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATcgc < 2:4615731/93‑1 (MQ=255)
ccTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATcgc > 2:637410/1‑93 (MQ=255)
cTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTCTGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATcgcg > 1:2359002/1‑93 (MQ=255)
cTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATcgcg < 2:2294774/93‑1 (MQ=255)
cTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATcgcg < 1:367421/93‑1 (MQ=255)
gcgcTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTa > 2:3025931/1‑93 (MQ=255)
cgcTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTaa > 1:3594755/1‑93 (MQ=255)
tCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACt > 1:4065339/1‑93 (MQ=255)
cgcgCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTcc < 1:1977197/93‑1 (MQ=255)
cgcgCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTcc < 2:3520165/93‑1 (MQ=255)
gcgcTCTGCTTGTGAAGTTGAACG‑AAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAg > 1:5284543/1‑93 (MQ=255)
gcTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGt > 2:4974544/1‑93 (MQ=255)
gcTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGt < 1:4364866/93‑1 (MQ=255)
ctgtGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGtt < 2:861835/90‑1 (MQ=255)
ctctGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGtt > 2:2633643/1‑93 (MQ=255)
ctctGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGtt < 2:569211/93‑1 (MQ=255)
ctctGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGtt < 1:1737114/93‑1 (MQ=255)
tctGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTa > 2:2840740/1‑93 (MQ=255)
ctGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTaa > 1:3646972/1‑93 (MQ=255)
gCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATc < 1:6419809/93‑1 (MQ=255)
gCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATc < 1:5811668/93‑1 (MQ=255)
gCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATc < 1:2219864/93‑1 (MQ=255)
gCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATc > 2:3251984/1‑93 (MQ=255)
ttGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGc > 2:4887745/1‑93 (MQ=255)
ttGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGc > 1:3516398/1‑93 (MQ=255)
tgtgAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCa < 2:3384766/93‑1 (MQ=255)
tgtgAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCa > 2:5720235/1‑93 (MQ=255)
tgtgAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCa > 1:2578216/1‑93 (MQ=255)
gtgAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCAt > 2:2949875/1‑93 (MQ=255)
gtgAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCAt < 2:5067656/93‑1 (MQ=255)
gAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTg > 2:1719715/1‑93 (MQ=255)
gAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTg > 2:5567845/1‑93 (MQ=255)
aaGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGa < 1:479387/93‑1 (MQ=255)
aGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAg < 2:4242438/93‑1 (MQ=255)
aGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAg > 2:2036971/1‑93 (MQ=255)
aGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAg < 1:2057643/93‑1 (MQ=255)
gTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAgg > 2:1925363/1‑93 (MQ=255)
gTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAgg < 1:5687009/93‑1 (MQ=255)
gAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCAt > 2:2708068/1‑85 (MQ=255)
gAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCAt < 1:2708068/85‑1 (MQ=255)
gAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGa < 2:5448836/93‑1 (MQ=255)
gAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGa > 2:322200/1‑93 (MQ=255)
aaCGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGaa < 1:2152122/93‑1 (MQ=255)
aaCGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGaa > 2:6288905/1‑93 (MQ=255)
aaCGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGaa < 2:5477804/93‑1 (MQ=255)
aCGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAag < 2:1281195/93‑1 (MQ=255)
aCGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAag < 1:5003459/93‑1 (MQ=255)
aCGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAag > 1:4611549/1‑93 (MQ=255)
aaaaTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGATGCGAAGAGAAag > 2:3503305/1‑93 (MQ=255)
aaaaTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAag > 1:987415/1‑93 (MQ=255)
aaaTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAagg > 2:1473697/1‑92 (MQ=255)
aaTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAagag < 1:37809/93‑1 (MQ=255)
aTGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAgg < 1:3203396/93‑1 (MQ=255)
tAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGc > 2:6077746/1‑93 (MQ=255)
tAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGc < 1:5149597/93‑1 (MQ=255)
aGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGa > 2:3171960/1‑93 (MQ=255)
gTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAt > 2:4138310/1‑93 (MQ=255)
gTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAt < 1:4651917/93‑1 (MQ=255)
gTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAt < 1:4161320/93‑1 (MQ=255)
aTGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAttt > 2:540130/1‑93 (MQ=255)
aTGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAttt < 2:6331638/93‑1 (MQ=255)
aTGCACTGACTGCATAGTCACGGCAGCGGGCCACTACACCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAttt < 2:3074539/93‑1 (MQ=255)
tGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGAtttt < 2:4804662/93‑1 (MQ=255)
cACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGc > 2:3652884/1‑93 (MQ=255)
actgactgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCt > 2:235590/1‑93 (MQ=255)
actgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCg < 1:182069/93‑1 (MQ=255)
actgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCg > 1:4770999/1‑93 (MQ=255)
ctgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCgg < 1:106027/93‑1 (MQ=255)
ctgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCgg > 1:5444616/1‑93 (MQ=255)
ctgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCgg < 1:3285327/93‑1 (MQ=255)
tgCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGt > 2:5968535/1‑93 (MQ=255)
gCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTc < 2:175967/93‑1 (MQ=255)
gCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTc < 1:4969226/93‑1 (MQ=255)
cATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCt > 2:6155260/1‑93 (MQ=255)
cATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCt > 1:5604723/1‑93 (MQ=255)
aTAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCtt > 1:5925958/1‑93 (MQ=255)
aTAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCtt < 1:1379577/93‑1 (MQ=255)
tCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTcc < 1:3997311/93‑1 (MQ=255)
tCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTcc < 1:1895858/93‑1 (MQ=255)
aCGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTg < 2:914701/93‑1 (MQ=255)
aCGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTg < 1:6282422/93‑1 (MQ=255)
aCGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTg > 1:1353967/1‑93 (MQ=255)
cGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGCAGAGAAAGAGGAATTGCGAATTTGCTCCCGGTCTTTTCCTGa > 2:5182329/1‑93 (MQ=255)
gCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAAt > 1:4732137/1‑93 (MQ=255)
gCAGCGGGCCACGACATCGCGTAAACACCAGTTAATCGCAGTGAGGCGAAGAGAAATAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAAt < 2:1496553/93‑1 (MQ=255)
cAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATg < 1:5784938/93‑1 (MQ=255)
gCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGAc > 1:4240986/1‑93 (MQ=255)
cGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACa < 1:3444523/93‑1 (MQ=255)
gggCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACAt < 2:1858710/93‑1 (MQ=255)
ggCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATg > 2:2737020/1‑93 (MQ=255)
|
GGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATG > NC_000913/1199121‑1199300
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGA > NC_000913/1199120‑1199304
|
TGGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCAC < SRR4302534.21849/94‑1 (MQ=60)
GCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTA > SRR4302534.5854648/1‑94 (MQ=60)
CTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTAC < SRR4302534.2699987/94‑1 (MQ=60)
CTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTAC > SRR4302534.4277884/1‑94 (MQ=60)
TTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACAT < SRR4302534.2886582/94‑1 (MQ=60)
TAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATC > SRR4302534.1654858/1‑94 (MQ=60)
TAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATC < SRR4302534.3396781/94‑1 (MQ=60)
TAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATC > SRR4302534.964086/1‑94 (MQ=60)
AACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCG < SRR4302534.3738922/94‑1 (MQ=60)
ACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGC > SRR4302534.4179122/1‑94 (MQ=60)
CCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTCTGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCG > SRR4302534.2421619/1‑94 (MQ=60)
CCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCG > SRR4302534.2344549/1‑94 (MQ=60)
CTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGT < SRR4302534.376796/94‑1 (MQ=60)
GCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAA > SRR4302534.3691440/1‑94 (MQ=60)
CGCTCCGCGCTCTGCTTGTGTAGTTGGACGAAAAAAATGCACTAAAGATGCACTCACTGCAATGTCACCGCAGCGGGCCACTACAGCGCGGAAA > SRR4302534.6463177/1‑94 (MQ=34)
GCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTAGATCGCGTAAAC < SRR4302534.605283/94‑1 (MQ=60)
CTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACT < SRR4302534.4108299/94‑1 (MQ=60)
CTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACT > SRR4302534.4174410/1‑94 (MQ=60)
CGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCA < SRR4302534.2028968/94‑1 (MQ=60)
CGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCA < SRR4302534.3728335/94‑1 (MQ=60)
CGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCA > SRR4302534.2272722/1‑94 (MQ=60)
CGCGCTCTGCTTGTGAAGTTGAACG‑AAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAG > SRR4302534.5427203/1‑94 (MQ=60)
CGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGT < SRR4302534.4682407/94‑1 (MQ=60)
GCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTT < SRR4302534.4482552/94‑1 (MQ=60)
CTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTA < SRR4302534.1782220/94‑1 (MQ=60)
TCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAA > SRR4302534.3744967/1‑94 (MQ=60)
GCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCG < SRR4302534.196739/94‑1 (MQ=60)
GCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCG < SRR4302534.6592979/94‑1 (MQ=60)
GCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCG < SRR4302534.5969409/94‑1 (MQ=60)
GCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCG < SRR4302534.2278664/94‑1 (MQ=60)
GCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCG < SRR4302534.1899350/94‑1 (MQ=60)
CTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCGGTTAATCGC < SRR4302534.4262590/94‑1 (MQ=60)
CTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGC > SRR4302534.3610980/1‑94 (MQ=60)
TTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCA > SRR4302534.2646507/1‑94 (MQ=60)
TGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCAT > SRR4302534.5169807/1‑94 (MQ=60)
TGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATAGCAT > SRR4302534.2660178/1‑94 (MQ=60)
atagatTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATT < SRR4302534.2779573/88‑1 (MQ=60)
GAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGA > SRR4302534.2148614/1‑94 (MQ=60)
GAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATAGCGTAAACTCCAGTTAATCGCATTGA > SRR4302534.5337921/1‑94 (MQ=60)
AAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAG < SRR4302534.4790066/94‑1 (MQ=60)
AAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAG < SRR4302534.1811664/94‑1 (MQ=60)
AAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAG < SRR4302534.491429/94‑1 (MQ=60)
AAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAG > SRR4302534.4898482/1‑94 (MQ=60)
AAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAG < SRR4302534.3596987/94‑1 (MQ=60)
AGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGG < SRR4302534.1406613/94‑1 (MQ=60)
AGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGG > SRR4302534.5070036/1‑94 (MQ=60)
AGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGG < SRR4302534.2111388/94‑1 (MQ=60)
GTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGC < SRR4302534.2746448/94‑1 (MQ=60)
GTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGC < SRR4302534.5841015/94‑1 (MQ=60)
TTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCG < SRR4302534.1660324/94‑1 (MQ=60)
TTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCG > SRR4302534.5427910/1‑94 (MQ=60)
GAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAA > SRR4302534.1445812/1‑94 (MQ=60)
AACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAG < SRR4302534.2208933/94‑1 (MQ=60)
AACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAG < SRR4302534.2556713/94‑1 (MQ=60)
AACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAG > SRR4302534.590609/1‑94 (MQ=60)
AACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAG > SRR4302534.4736709/1‑94 (MQ=60)
ACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGA < SRR4302534.5138718/94‑1 (MQ=60)
ACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGA < SRR4302534.5983016/94‑1 (MQ=60)
ACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAAGCGAAGA > SRR4302534.2029223/1‑94 (MQ=60)
CGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAG < SRR4302534.3483588/94‑1 (MQ=60)
CGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAG > SRR4302534.6562382/1‑94 (MQ=60)
AAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAA > SRR4302534.4703151/1‑94 (MQ=60)
AAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAG > SRR4302534.1012659/1‑94 (MQ=60)
AAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAG > SRR4302534.1610756/1‑94 (MQ=60)
AAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGA > SRR4302534.4910677/1‑94 (MQ=60)
AAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAG < SRR4302534.4999144/94‑1 (MQ=60)
AATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGG < SRR4302534.38819/94‑1 (MQ=60)
AATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGG > SRR4302534.5931535/1‑94 (MQ=60)
ATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGA < SRR4302534.3288340/94‑1 (MQ=60)
ACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTG < SRR4302534.5131052/94‑1 (MQ=60)
ACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTG < SRR4302534.5619963/94‑1 (MQ=60)
ACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTG < SRR4302534.877227/94‑1 (MQ=60)
CTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGC > SRR4302534.3765776/1‑94 (MQ=60)
CTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGC < SRR4302534.207008/94‑1 (MQ=60)
TAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCG < SRR4302534.5288523/94‑1 (MQ=60)
AAGTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGA > SRR4302534.2382541/1‑94 (MQ=60)
GTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATT < SRR4302534.4778209/94‑1 (MQ=60)
GTATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATT < SRR4302534.4273700/94‑1 (MQ=60)
ATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTT > SRR4302534.6162346/1‑94 (MQ=60)
ATGCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTT < SRR4302534.3613943/94‑1 (MQ=60)
GCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGC > SRR4302534.567794/1‑94 (MQ=60)
GCACTGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGC < SRR4302534.3990071/94‑1 (MQ=60)
TGACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCC < SRR4302534.5761217/94‑1 (MQ=60)
GACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCG > SRR4302534.4900541/1‑94 (MQ=60)
GACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCG < SRR4302534.4373387/94‑1 (MQ=60)
ACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGG < SRR4302534.186857/94‑1 (MQ=60)
ACTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGG > SRR4302534.5591303/1‑94 (MQ=60)
CTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGT < SRR4302534.108862/94‑1 (MQ=60)
CTGCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGT < SRR4302534.3372909/94‑1 (MQ=60)
GCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCT < SRR4302534.5103768/94‑1 (MQ=60)
GCATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCT > SRR4302534.5756310/1‑94 (MQ=60)
CATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTT > SRR4302534.3204059/1‑94 (MQ=60)
CATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTT > SRR4302534.6086870/1‑94 (MQ=60)
CATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTT < SRR4302534.2690450/94‑1 (MQ=60)
ATAGTCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTT < SRR4302534.1415907/94‑1 (MQ=60)
TCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCT < SRR4302534.4104317/94‑1 (MQ=60)
TCACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCT < SRR4302534.1945306/94‑1 (MQ=60)
CACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTG < SRR4302534.3784336/94‑1 (MQ=60)
CACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTG < SRR4302534.4769719/94‑1 (MQ=60)
CACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTG > SRR4302534.1389654/1‑94 (MQ=60)
CACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTG < SRR4302534.5944378/94‑1 (MQ=60)
ACGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGA < SRR4302534.6452430/94‑1 (MQ=60)
CGGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAA < SRR4302534.5850086/94‑1 (MQ=60)
GGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAAT > SRR4302534.333476/1‑94 (MQ=60)
GGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAAT > SRR4302534.307110/1‑94 (MQ=60)
GGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAAT > SRR4302534.5278978/1‑94 (MQ=60)
GGCAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAAT > SRR4302534.4860633/1‑94 (MQ=60)
CAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGA < SRR4302534.5941855/94‑1 (MQ=60)
CAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGA < SRR4302534.4849672/94‑1 (MQ=60)
CAGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGA > SRR4302534.1227087/1‑94 (MQ=60)
AGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGAC > SRR4302534.4355337/1‑94 (MQ=60)
AGCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGAC > SRR4302534.1883813/1‑94 (MQ=60)
GCGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACA < SRR4302534.2784746/94‑1 (MQ=60)
CGGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACAT < SRR4302534.3537094/94‑1 (MQ=60)
GGGCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATG > SRR4302534.3888783/1‑94 (MQ=60)
GCCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAA > SRR4302534.554549/1‑94 (MQ=60)
CCACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAG < SRR4302534.5989913/94‑1 (MQ=60)
CACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGT > SRR4302534.4650657/1‑94 (MQ=60)
|
TGGCTTTAACCTGCGCTCCGCGCTCTGCTTGTGAAGTTGAACGAAAAAAATGCACTAAGTATGCACTGACTGCATAGTCACGGCAGCGGGCTACTACATCGCGTAAACTCCAGTTAATCGCATTGAGGCGAAGAGAAAGAGGAATTGCGATTTTGCTCCCGGTCTTTTCCTGAATGACATGAAGA > NC_000913/1199120‑1199304
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
