Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,192,497	A→G	L167P (CTG→CCG)	ycfB ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,192,497	0	A	G	100.0%	881.9 / NA	259	L167P (CTG→CCG)	ycfB	hypothetical protein
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (135/124); total (135/124)

Only 100 of 267 total aligned reads displayed.

CCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTG  >  NC_000913/1192407‑1192586

  ggTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCt                                                                                       >  2:3486045/1‑93 (MQ=255)

    tAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCttt                                                                                     <  1:5621087/93‑1 (MQ=255)

     agagTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTg                                                                                    <  1:104239/93‑1 (MQ=255)

     agagTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTg                                                                                    >  2:2555676/1‑93 (MQ=255)

     agagTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTg                                                                                    >  1:4176297/1‑93 (MQ=255)

       agTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTgcg                                                                                  >  1:7309827/1‑93 (MQ=255)

       agTCTTTTTTCTCCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTgcg                                                                                  <  2:3139467/93‑1 (MQ=255)

        gTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGTCGACCGGGAACGGGCTTTgcgc                                                                                 >  2:6353494/1‑93 (MQ=255)

         tCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCa                                                                                >  1:8571836/1‑93 (MQ=255)

           ttttttCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAAt                                                                              <  1:6322691/93‑1 (MQ=255)

               ttcttcGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGc                                                                          >  1:8418435/1‑93 (MQ=255)

                    cgcgGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATg                                                                     >  1:5980413/1‑93 (MQ=255)

                     gcgGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATgg                                                                    >  1:2511809/1‑93 (MQ=255)

                      cgGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGc                                                                   >  2:539180/1‑93 (MQ=255)

                      cgGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGc                                                                   >  1:490654/1‑93 (MQ=255)

                       ggTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCt                                                                  <  1:2320782/93‑1 (MQ=255)

                       ggTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCt                                                                  >  2:833357/1‑93 (MQ=255)

                       ggTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCt                                                                  >  1:3962288/1‑93 (MQ=255)

                        gTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTg                                                                 <  1:7769067/93‑1 (MQ=255)

                        gTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTg                                                                 <  1:5464729/93‑1 (MQ=255)

                          gaccagaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAg                                                               >  2:8276794/1‑93 (MQ=255)

                           accagaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGc                                                              <  1:7449352/93‑1 (MQ=255)

                           accagaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGc                                                              >  1:4513213/1‑93 (MQ=255)

                            ccagaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCg                                                             <  1:6120589/93‑1 (MQ=255)

                             cagaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGt                                                            <  1:1584686/93‑1 (MQ=255)

                              agaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCACTCTGCTCATGGCTGAGCGta                                                           >  2:1795387/1‑93 (MQ=255)

                              agaccaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGta                                                           <  2:3319344/93‑1 (MQ=255)

                                accaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGtata                                                         >  2:2890582/1‑93 (MQ=255)

                                accaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGtata                                                         >  2:4240834/1‑93 (MQ=255)

                                accaAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCCtata                                                         >  1:3461697/1‑93 (MQ=255)

                                  caAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATaaa                                                       <  2:1691719/93‑1 (MQ=255)

                                  caAGATCTTCAGCAATCTTACGCACCTGCGGTTTTGCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATaaa                                                       <  1:7954004/93‑1 (MQ=255)

                                   caGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCGGCTCATGGCTGAGCGTATAAAg                                                      <  2:3838430/92‑1 (MQ=255)

                                    aGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAgg                                                     >  2:8443236/1‑93 (MQ=255)

                                    aGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAga                                                     >  1:7530900/1‑92 (MQ=255)

                                     gATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGa                                                    >  1:7076865/1‑93 (MQ=255)

                                      aTCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGaa                                                   <  2:473480/93‑1 (MQ=255)

                                      aTCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGaa                                                   <  1:1138292/93‑1 (MQ=255)

                                        cTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGt                                                 <  2:3654690/93‑1 (MQ=255)

                                        cTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGt                                                 <  2:8728596/93‑1 (MQ=255)

                                         ttCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTa                                                <  1:14483/93‑1 (MQ=255)

                                         ttCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTa                                                <  1:1974561/93‑1 (MQ=255)

                                          tCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATATGCTCATGGCTGAGCGTATAAAGGAAGTAg                                               >  2:5233362/1‑93 (MQ=255)

                                            aGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGct                                             >  2:230291/1‑93 (MQ=255)

                                            aGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGct                                             >  1:3205516/1‑93 (MQ=255)

                                             gCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGctc                                            >  1:6426420/1‑93 (MQ=255)

                                              cAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGctct                                           <  1:6677066/93‑1 (MQ=255)

                                              cAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGctct                                           <  1:2229377/93‑1 (MQ=255)

                                              cAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGctct                                           <  1:3098525/93‑1 (MQ=255)

                                               aaTCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTg                                          >  1:4704826/1‑93 (MQ=255)

                                               aaTCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTg                                          <  1:3503642/93‑1 (MQ=255)

                                                aTCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTgg                                         >  2:5676200/1‑93 (MQ=255)

                                                aTCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTgg                                         >  2:5010359/1‑93 (MQ=255)

                                                aTCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTgg                                         >  2:4563676/1‑93 (MQ=255)

                                                  cTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTc                                       <  2:3202057/93‑1 (MQ=255)

                                                  cTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTc                                       <  1:3823481/93‑1 (MQ=255)

                                                   ttACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCt                                      <  2:7322153/93‑1 (MQ=255)

                                                    tACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCtt                                     >  1:8468482/1‑93 (MQ=255)

                                                     aCGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGTGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCttt                                    >  2:7116499/1‑93 (MQ=255)

                                                     aCGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCttt                                    >  2:7940541/1‑93 (MQ=255)

                                                      cGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTa                                   <  2:3408026/93‑1 (MQ=255)

                                                       gCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAt                                  <  1:917582/93‑1 (MQ=255)

                                                       gCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAt                                  <  2:3471185/93‑1 (MQ=255)

                                                        cACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAtt                                 >  1:6925115/1‑93 (MQ=255)

                                                        cACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTATGGTCTTTAtt                                 >  1:1526595/1‑93 (MQ=255)

                                                         cccTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTg                                <  1:2576920/92‑1 (MQ=255)

                                                           cTGCGGTTTTTCCAGTGCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCt                              <  2:2121776/93‑1 (MQ=255)

                                                              cGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTc                           >  2:6905982/1‑93 (MQ=255)

                                                               ggTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTcc                          <  1:2778850/93‑1 (MQ=255)

                                                               ggTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCAAGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTcc                          >  2:1389631/1‑93 (MQ=255)

                                                                 tttttCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAg                        >  1:6570857/1‑93 (MQ=255)

                                                                  ttttCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGa                       <  1:1348176/93‑1 (MQ=255)

                                                                  ttttCCAGTTCGCCGACCGGGAACGGGCGTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGa                       <  2:5882227/93‑1 (MQ=255)

                                                                    ttCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGAcc                     >  1:8734858/1‑93 (MQ=255)

                                                                      ccAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCAc                   >  2:8605749/1‑93 (MQ=255)

                                                                      ccAGTGCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCAc                   <  2:5443171/93‑1 (MQ=255)

                                                                       cAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACg                  >  2:3098421/1‑93 (MQ=255)

                                                                        aGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgc                 <  2:2489857/93‑1 (MQ=255)

                                                                        aGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgc                 <  2:5070040/93‑1 (MQ=255)

                                                                        aGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgc                 >  2:1956796/1‑93 (MQ=255)

                                                                          ttCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGCATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACncag               >  2:6666935/1‑93 (MQ=255)

                                                                           tCGCTGACCGGGAGCGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgcagc              <  2:3299447/93‑1 (MQ=255)

                                                                           tCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgcagc              <  1:5047575/93‑1 (MQ=255)

                                                                            cGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgcagca             <  1:4424355/93‑1 (MQ=255)

                                                                            cGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACgcagca             <  2:2686839/93‑1 (MQ=255)

                                                                             gCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGcagcag            >  1:5184556/1‑93 (MQ=255)

                                                                             gCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGcagcag            >  2:1574828/1‑93 (MQ=255)

                                                                              ccGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAgg           >  1:7160404/1‑93 (MQ=255)

                                                                              ccGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAgg           >  1:8695308/1‑93 (MQ=255)

                                                                                gACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcg         >  2:4376587/1‑93 (MQ=255)

                                                                                gACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcg         >  2:116229/1‑93 (MQ=255)

                                                                                gACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcg         >  1:4250377/1‑93 (MQ=255)

                                                                                gACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGACTTTATTGCTGTCCAGACCACGCAGCAggcg         >  2:384807/1‑93 (MQ=255)

                                                                                 aCCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcgg        >  2:6441968/1‑93 (MQ=255)

                                                                                  ccGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAggcggc       <  2:8187993/93‑1 (MQ=255)

                                                                                    gggAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGctc     >  1:5293774/1‑93 (MQ=255)

                                                                                     ggAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCATACCACGCAGCAGGCGGttct    >  1:7810794/1‑93 (MQ=255)

                                                                                     ggAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGctct    <  1:2428970/93‑1 (MQ=255)

                                                                                      gAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCtt   <  2:6021807/93‑1 (MQ=255)

                                                                                       aaCGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTg  >  2:7191144/1‑93 (MQ=255)

CCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTG  >  NC_000913/1192407‑1192586

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 19 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCA  >  NC_000913/1192404‑1192589

ATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACG                                                                                              <  SRR4302541.744482/94‑1 (MQ=60)

 tcgCGGTAGAGTCTTTTCTCGTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGG                                                                                             <  SRR4302541.4709048/91‑1 (MQ=60)

 TGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGG                                                                                             <  SRR4302541.2999002/94‑1 (MQ=60)

  GCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGG                                                                                            >  SRR4302541.572068/1‑94 (MQ=60)

   CCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGC                                                                                           <  SRR4302541.6756038/94‑1 (MQ=60)

     GGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTT                                                                                         >  SRR4302541.5252508/1‑94 (MQ=60)

     CGTAGAGTCTTTTTTCTTCTCGGTGACCAGACCAAGATCTTCAGCAATCTGACGCACCTGCGGTTGTTCCAGTTCGCCGACCGGGAACGGGCTT                                                                                         <  SRR4302541.1925151/94‑1 (MQ=60)

      GTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTT                                                                                        >  SRR4302541.2564593/1‑94 (MQ=60)

      GTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTT                                                                                        <  SRR4302541.5561581/94‑1 (MQ=60)

       TAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTG                                                                                       >  SRR4302541.2637292/1‑94 (MQ=60)

       TAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTG                                                                                       <  SRR4302541.5678605/94‑1 (MQ=60)

       TAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTG                                                                                       >  SRR4302541.4217718/1‑94 (MQ=60)

        AGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGC                                                                                      <  SRR4302541.105114/94‑1 (MQ=60)

         GAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCG                                                                                     >  SRR4302541.7387860/1‑94 (MQ=60)

           GTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCA                                                                                   >  SRR4302541.1132700/1‑94 (MQ=60)

           GTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCA                                                                                   >  SRR4302541.7423377/1‑94 (MQ=60)

           GTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCA                                                                                   >  SRR4302541.8663892/1‑94 (MQ=60)

           GTCTTTTTTCTTCGCGGGGCCCAGACTAAGATCTTGTGCAATCTTACGTCCCTGCGGTTTTTCCAGTTCGCCCCCCGCGAACAGGCTTTCCGCA                                                                                   >  SRR4302541.6697501/1‑94 (MQ=32)

             tttttttctcatCGGTGACCAGCCCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAAT                                                                                 <  SRR4302541.7997567/82‑1 (MQ=60)

             CTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAAT                                                                                 >  SRR4302541.8892338/1‑94 (MQ=60)

              TTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATC                                                                                <  SRR4302541.6387333/94‑1 (MQ=60)

               TTTTTCTTCGCGGTGACCAGACGAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCT                                                                               <  SRR4302541.3856044/94‑1 (MQ=60)

                 TTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGC                                                                             >  SRR4302541.8509449/1‑94 (MQ=60)

                 TTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGC                                                                             >  SRR4302541.4945846/1‑94 (MQ=60)

                 TTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGC                                                                             <  SRR4302541.1422196/94‑1 (MQ=60)

                 TTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGC                                                                             <  SRR4302541.7816652/94‑1 (MQ=60)

                  TTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCT                                                                            <  SRR4302541.7281635/94‑1 (MQ=60)

                    CTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCA                                                                          <  SRR4302541.3368827/94‑1 (MQ=60)

                    CTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCA                                                                          >  SRR4302541.7763713/1‑94 (MQ=60)

                    CTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCA                                                                          >  SRR4302541.3509636/1‑94 (MQ=60)

                      TCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATG                                                                        >  SRR4302541.4903652/1‑94 (MQ=60)

                      TCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATG                                                                        >  SRR4302541.6041575/1‑94 (MQ=60)

                       CGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGG                                                                       >  SRR4302541.2537116/1‑94 (MQ=60)

                        GCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGC                                                                      >  SRR4302541.495293/1‑94 (MQ=60)

                        GCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGC                                                                      <  SRR4302541.5876879/94‑1 (MQ=60)

                         CGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCT                                                                     >  SRR4302541.4001641/1‑94 (MQ=60)

                          GGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTG                                                                    <  SRR4302541.8842416/94‑1 (MQ=60)

                          GGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTG                                                                    <  SRR4302541.2343302/94‑1 (MQ=60)

                           GTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGA                                                                   <  SRR4302541.5520787/94‑1 (MQ=60)

                           GTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGA                                                                   <  SRR4302541.7851712/94‑1 (MQ=60)

                           GTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGA                                                                   <  SRR4302541.7851713/94‑1 (MQ=60)

                            TGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAG                                                                  <  SRR4302541.6372189/94‑1 (MQ=60)

                             GACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGC                                                                 >  SRR4302541.6391845/1‑94 (MQ=60)

                             GACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGC                                                                 >  SRR4302541.4558752/1‑94 (MQ=60)

                              ACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCG                                                                <  SRR4302541.7177146/94‑1 (MQ=60)

                              ACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCG                                                                <  SRR4302541.7528926/94‑1 (MQ=60)

                              ACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCG                                                                <  SRR4302541.6728963/94‑1 (MQ=60)

                               CCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGT                                                               <  SRR4302541.6183100/94‑1 (MQ=60)

                               CCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGT                                                               >  SRR4302541.6147887/1‑94 (MQ=60)

                                CAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTA                                                              <  SRR4302541.1600495/94‑1 (MQ=60)

                                CAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTA                                                              <  SRR4302541.8685930/94‑1 (MQ=60)

                                CAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTA                                                              >  SRR4302541.8660486/1‑94 (MQ=60)

                                 AGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTAT                                                             >  SRR4302541.7058817/1‑94 (MQ=60)

                                  GACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCCTATA                                                            >  SRR4302541.3496297/1‑94 (MQ=60)

                                   ACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGTCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAA                                                           >  SRR4302541.3993405/1‑94 (MQ=60)

                                   ACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAA                                                           >  SRR4302541.2335499/1‑94 (MQ=60)

                                   ACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAA                                                           >  SRR4302541.3993404/1‑94 (MQ=60)

                                    CCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAA                                                          >  SRR4302541.7576103/1‑94 (MQ=60)

                                     CAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTGCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAG                                                         <  SRR4302541.8041655/94‑1 (MQ=60)

                                      AAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGG                                                        >  SRR4302541.3130054/1‑94 (MQ=60)

                                      AAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGA                                                        >  SRR4302541.7611386/1‑94 (MQ=60)

                                       AGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGA                                                       >  SRR4302541.1583612/1‑94 (MQ=60)

                                       AGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGA                                                       >  SRR4302541.7152135/1‑94 (MQ=60)

                                        GATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAA                                                      <  SRR4302541.7608069/94‑1 (MQ=60)

                                        GATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAA                                                      >  SRR4302541.6559189/1‑94 (MQ=60)

                                         ATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAG                                                     <  SRR4302541.1149098/94‑1 (MQ=60)

                                         ATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAG                                                     >  SRR4302541.1751171/1‑94 (MQ=60)

                                          TCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGT                                                    <  SRR4302541.2149308/94‑1 (MQ=60)

                                            TTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAG                                                  <  SRR4302541.1993624/94‑1 (MQ=60)

                                            TTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAG                                                  <  SRR4302541.14589/94‑1 (MQ=60)

                                              CAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCT                                                >  SRR4302541.2572215/1‑94 (MQ=60)

                                              CAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCT                                                >  SRR4302541.3237898/1‑94 (MQ=60)

                                              CAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCCTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCT                                                >  SRR4302541.5328445/1‑94 (MQ=60)

                                               AGTAATTTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCGGAGCGTATTAAGGAAGTAGCTC                                               >  SRR4302541.7905403/1‑94 (MQ=60)

                                               AGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTC                                               >  SRR4302541.6491935/1‑94 (MQ=60)

                                               AGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTC                                               >  SRR4302541.4261982/1‑94 (MQ=60)

                                                 CAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTG                                             <  SRR4302541.2531570/94‑1 (MQ=60)

                                                 CAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTG                                             <  SRR4302541.2250973/94‑1 (MQ=60)

                                                 CAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTG                                             >  SRR4302541.4752789/1‑94 (MQ=60)

                                                 CAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTG                                             <  SRR4302541.3129932/94‑1 (MQ=60)

                                                 CAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTG                                             <  SRR4302541.6745960/94‑1 (MQ=60)

                                                  AATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGG                                            <  SRR4302541.4409851/94‑1 (MQ=60)

                                                  AATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGG                                            <  SRR4302541.3538815/94‑1 (MQ=60)

                                                   ATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGT                                           >  SRR4302541.3407683/1‑94 (MQ=60)

                                                     CTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTGTAAAGGAAGTAGCTCTGGTCT                                         <  SRR4302541.410235/94‑1 (MQ=60)

                                                     CTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCT                                         <  SRR4302541.3862001/94‑1 (MQ=60)

                                                      TTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTT                                        >  SRR4302541.3659199/1‑94 (MQ=60)

                                                      TTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTT                                        >  SRR4302541.3138308/1‑94 (MQ=60)

                                                      TTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTT                                        <  SRR4302541.2338714/94‑1 (MQ=60)

                                                      TTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTT                                        >  SRR4302541.1564072/1‑94 (MQ=60)

                                                      TTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTT                                        >  SRR4302541.8559822/1‑94 (MQ=60)

                                                         CGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTAT                                     <  SRR4302541.6479542/94‑1 (MQ=60)

                                                          GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                    <  SRR4302541.926161/94‑1 (MQ=60)

                                                          GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                    >  SRR4302541.6999014/1‑94 (MQ=60)

                                                          GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                    <  SRR4302541.6660557/94‑1 (MQ=60)

                                                          GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                    <  SRR4302541.4325472/94‑1 (MQ=60)

                                                          GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                    <  SRR4302541.510585/94‑1 (MQ=60)

                                                          GCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTATGGTCTTTATT                                    >  SRR4302541.1541860/1‑94 (MQ=60)

                                                          CCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATT                                    <  SRR4302541.2394507/94‑1 (MQ=60)

                                                            CCCTGCGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGC                                  <  SRR4302541.2602755/94‑1 (MQ=60)

                                                                 CGGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCC                             <  SRR4302541.1149409/94‑1 (MQ=60)

                                                                  GGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCA                            <  SRR4302541.2806857/94‑1 (MQ=60)

                                                                  GGTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCA                            >  SRR4302541.8399504/1‑94 (MQ=60)

                                                                   GTTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAG                           >  SRR4302541.6638081/1‑94 (MQ=60)

                                                                    TTTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGA                          <  SRR4302541.8595798/94‑1 (MQ=60)

                                                                     TTTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGAC                         <  SRR4302541.1361505/94‑1 (MQ=60)

                                                                      TTTCCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACC                        >  SRR4302541.8828370/1‑94 (MQ=60)

                                                                         CCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGGTCTGGTCTTTATTGCTGTCCAGACCACG                     <  SRR4302541.6989858/94‑1 (MQ=60)

                                                                         CCAGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACG                     <  SRR4302541.1414128/94‑1 (MQ=60)

                                                                           AGTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCA                   <  SRR4302541.1335274/94‑1 (MQ=60)

                                                                            GTTCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAG                  >  SRR4302541.2385520/1‑94 (MQ=60)

                                                                              TCGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCA                <  SRR4302541.5099515/94‑1 (MQ=60)

                                                                               CGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAG               <  SRR4302541.8527893/94‑1 (MQ=60)

                                                                               CGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAG               >  SRR4302541.4647309/1‑94 (MQ=60)

                                                                               CGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAG               >  SRR4302541.5237894/1‑94 (MQ=60)

                                                                               CGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAG               <  SRR4302541.4468792/94‑1 (MQ=60)

                                                                               CGCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAG               <  SRR4302541.8675999/94‑1 (MQ=60)

                                                                                cccggCCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGG              <  SRR4302541.2718587/89‑1 (MQ=60)

                                                                                GCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGGTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGG              <  SRR4302541.6203783/94‑1 (MQ=60)

                                                                                GCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGG              >  SRR4302541.1931997/1‑94 (MQ=60)

                                                                                GCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGG              >  SRR4302541.8788377/1‑94 (MQ=60)

                                                                                GCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGG              >  SRR4302541.4535378/1‑94 (MQ=60)

                                                                                GCCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGG              >  SRR4302541.7236736/1‑94 (MQ=60)

                                                                                 CCGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGC             <  SRR4302541.7221362/94‑1 (MQ=60)

                                                                                  CGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCG            >  SRR4302541.4292849/1‑94 (MQ=60)

                                                                                  CGACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCG            <  SRR4302541.4607858/94‑1 (MQ=60)

                                                                                   GACCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGG           >  SRR4302541.4264900/1‑94 (MQ=60)

                                                                                     CCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCT         <  SRR4302541.8822099/94‑1 (MQ=60)

                                                                                     CCGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCT         >  SRR4302541.4960372/1‑94 (MQ=60)

                                                                                      CGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTC        >  SRR4302541.1529592/1‑94 (MQ=60)

                                                                                      CGGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTC        >  SRR4302541.5348267/1‑94 (MQ=60)

                                                                                       GGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCATACCACGCAGCAGGCGGTTCT       >  SRR4302541.7895203/1‑94 (MQ=60)

                                                                                       GGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGTTCT       >  SRR4302541.5433486/1‑94 (MQ=60)

                                                                                       GGGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCT       >  SRR4302541.5142846/1‑94 (MQ=60)

                                                                                        GGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTT      <  SRR4302541.8078158/94‑1 (MQ=60)

                                                                                        GGAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTT      <  SRR4302541.2452987/94‑1 (MQ=60)

                                                                                         GAACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTG     <  SRR4302541.3028443/94‑1 (MQ=60)

                                                                                          AACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGC    <  SRR4302541.5531208/94‑1 (MQ=60)

                                                                                          AACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGC    >  SRR4302541.324968/1‑94 (MQ=60)

                                                                                           ACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCC   >  SRR4302541.7722511/1‑94 (MQ=60)

                                                                                           ACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCC   <  SRR4302541.6645572/94‑1 (MQ=60)

                                                                                           ACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCC   >  SRR4302541.4726181/1‑94 (MQ=60)

                                                                                           ACGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCC   <  SRR4302541.5169207/94‑1 (MQ=60)

                                                                                            CGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCA  >  SRR4302541.2366967/1‑94 (MQ=60)

                                                                                            CGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCA  >  SRR4302541.2604285/1‑94 (MQ=60)

                                                                                            CGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCA  >  SRR4302541.133757/1‑94 (MQ=60)

                                                                                            CGGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCA  >  SRR4302541.6178700/1‑94 (MQ=60)

ATGCCGGTAGAGTCTTTTTTCTTCGCGGTGACCAGACCAAGATCTTCAGCAATCTTACGCACCTGCGGTTTTTCCAGTTCGCCGACCGGGAACAGGCTTTGCGCAATCTGCTCATGGCTGAGCGTATAAAGGAAGTAGCTCTGGTCTTTATTGCTGTCCAGACCACGCAGCAGGCGGCTCTTGCCA  >  NC_000913/1192404‑1192589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 8 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`