Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,235,692 |
T→C |
Q258R (CAG→CGG) |
ycgB ← |
putative sporulation protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,235,692 | 0 | T | C | 99.5%
| 631.1
/ ‑4.4
| 183 | Q258R (CAG→CGG) | ycgB | putative sporulation protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (90/92); total (91/92) |
| Fisher's exact test for biased strand distribution p-value = 4.97e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.46e-01 |
Only 100 of 191 total aligned reads displayed.
AAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCTGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACC > NC_000913/1235602‑1235781
|
aGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACgccgcc > 2:5081828/1‑93 (MQ=255)
aGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACgccgcc < 2:3695866/93‑1 (MQ=255)
tCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTGCGCACAATACGCAGGATTTCACGCCGCCATg < 2:1148379/93‑1 (MQ=255)
tCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATg > 2:1075449/1‑93 (MQ=255)
gCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGAt < 2:2565673/93‑1 (MQ=255)
gCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGAt < 1:2404336/93‑1 (MQ=255)
cccAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGAtt < 2:6385050/93‑1 (MQ=255)
cccAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGAtt < 2:1061518/93‑1 (MQ=255)
ccAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTc < 2:1771800/93‑1 (MQ=255)
cAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTcc < 1:3552123/93‑1 (MQ=255)
cAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTcc > 1:3369144/1‑93 (MQ=255)
aGCCTTCGTTCATCACCTGAGTCTGTATTTGCGGATAAAAATACTGGCTCTCCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCca < 2:5244831/93‑1 (MQ=255)
gCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcag < 2:3557130/93‑1 (MQ=255)
ccTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcagc < 1:5248747/93‑1 (MQ=255)
cTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcagca < 1:1149865/93‑1 (MQ=255)
ttCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcagcag > 2:5197513/1‑93 (MQ=255)
ttCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcagcag > 1:3175138/1‑93 (MQ=255)
ttCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcagcag > 1:1515462/1‑93 (MQ=255)
tCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGt > 1:5769770/1‑93 (MQ=255)
tCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGt < 2:368604/93‑1 (MQ=255)
gTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTgg > 2:5330730/1‑93 (MQ=255)
gTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTgg < 2:4441734/93‑1 (MQ=255)
gTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTgg > 2:4377106/1‑93 (MQ=255)
gTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTgg > 1:198455/1‑93 (MQ=255)
ttCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGgc < 1:2448880/93‑1 (MQ=255)
ttCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGgc > 2:3429266/1‑93 (MQ=255)
catcaCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGgcgc < 1:5093614/93‑1 (MQ=255)
catcaCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGgcgc < 2:1345265/93‑1 (MQ=255)
atcaCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCa > 1:6451739/1‑93 (MQ=255)
caCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAtt < 1:5731560/93‑1 (MQ=255)
caCCGGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAtt < 2:1261462/93‑1 (MQ=255)
aCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAttt > 1:2169706/1‑93 (MQ=255)
ccTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAtttt > 2:1516182/1‑93 (MQ=255)
ccTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAtttt > 1:3892617/1‑93 (MQ=255)
ccTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAtttt > 2:2396576/1‑93 (MQ=255)
ccTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAtttt < 1:4973317/93‑1 (MQ=255)
tGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTtc > 1:5375858/1‑93 (MQ=255)
gAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTtct > 1:4387947/1‑93 (MQ=255)
gAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTtct > 2:5338549/1‑93 (MQ=255)
aGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTtctc < 2:1286072/93‑1 (MQ=255)
aGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTtctc > 2:881934/1‑93 (MQ=255)
gTCTGTTTTTGCTGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTcc < 1:4931244/93‑1 (MQ=255)
gTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTcc < 2:4698281/93‑1 (MQ=255)
tCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCa < 2:3932967/93‑1 (MQ=255)
cTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCAt < 2:6368788/93‑1 (MQ=255)
tGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATa > 1:376990/1‑93 (MQ=255)
gTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATaa > 2:2148973/1‑93 (MQ=255)
gTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATaa > 1:474229/1‑93 (MQ=255)
gTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATaa > 2:321248/1‑93 (MQ=255)
gTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATaa > 1:3148519/1‑93 (MQ=255)
ttttGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATaaaa > 1:2138507/1‑93 (MQ=255)
tttGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAAt < 1:1357437/93‑1 (MQ=255)
gCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATACAATaga > 2:2294866/1‑93 (MQ=255)
gCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATaga < 1:343881/93‑1 (MQ=255)
ggATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGc > 1:596292/1‑93 (MQ=255)
aaaaTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGtt > 1:4265599/1‑93 (MQ=255)
aaaTACTGGCTCACCTTACGCACAATACGCAGGCTTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGttt > 1:5857946/1‑93 (MQ=255)
aTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTc < 2:2795305/93‑1 (MQ=255)
aTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTc > 2:547668/1‑93 (MQ=255)
aTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTc > 1:5526073/1‑93 (MQ=255)
aTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTc > 1:880821/1‑93 (MQ=255)
aTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTc < 2:1446186/93‑1 (MQ=255)
tACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCt < 1:2331093/93‑1 (MQ=255)
tACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCt < 1:5509318/93‑1 (MQ=255)
tGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTtgt > 2:4432773/1‑93 (MQ=255)
gCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTgg < 2:4217823/93‑1 (MQ=255)
cTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGt < 1:19133/93‑1 (MQ=255)
tCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGtt < 1:5412740/93‑1 (MQ=255)
tCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGtt < 1:253087/93‑1 (MQ=255)
tCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGtt > 2:2926655/1‑93 (MQ=255)
tCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGtt > 1:3592624/1‑93 (MQ=255)
tCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGtt < 1:1439696/93‑1 (MQ=255)
cACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTc < 1:3942078/93‑1 (MQ=255)
cACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTc > 1:2979224/1‑93 (MQ=255)
aCCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcg > 2:4246925/1‑93 (MQ=255)
aCCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcg > 2:3950168/1‑93 (MQ=255)
ccTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgg > 1:1667328/1‑93 (MQ=255)
ccTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgg > 2:2894191/1‑93 (MQ=255)
cTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgga < 2:4249718/93‑1 (MQ=255)
cTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgga > 2:4956837/1‑93 (MQ=255)
cTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgga > 1:2546473/1‑93 (MQ=255)
ttACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGTTTcggag > 2:123719/1‑92 (MQ=255)
ttACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcggac > 1:1013564/1‑93 (MQ=255)
aCGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcggacgg > 1:195672/1‑93 (MQ=255)
cGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcggacgga < 2:5305058/93‑1 (MQ=255)
gCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGAt > 2:3086111/1‑93 (MQ=255)
cacaATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATa < 2:5426723/93‑1 (MQ=255)
aaTACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgcg > 1:4238969/1‑93 (MQ=255)
aaTACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgcg > 1:1245889/1‑93 (MQ=255)
aTACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgcgg < 1:1604108/93‑1 (MQ=255)
tACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgcggc > 2:2009865/1‑93 (MQ=255)
tACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgcggc < 1:4791219/93‑1 (MQ=255)
cGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGgcgc > 1:2216966/1‑93 (MQ=255)
gCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGgcgcg > 2:6064209/1‑93 (MQ=255)
gATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTc < 2:591670/93‑1 (MQ=255)
gATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTc > 2:3128778/1‑93 (MQ=255)
aTTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCa < 1:6273720/93‑1 (MQ=255)
ttCACGCCGCCATGAGTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGc < 1:2583760/93‑1 (MQ=255)
cACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCaa > 2:823351/1‑93 (MQ=255)
cgccgcCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAAcc < 2:4584747/93‑1 (MQ=255)
|
AAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCTGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACC > NC_000913/1235602‑1235781
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCTGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTT > NC_000913/1235599‑1235785
|
CAGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCC > SRR4302534.5243916/1‑94 (MQ=60)
AGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCG > SRR4302534.3241529/1‑94 (MQ=60)
AGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCG > SRR4302534.4041719/1‑94 (MQ=60)
AAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCC < SRR4302534.6084997/94‑1 (MQ=60)
GGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCAT < SRR4302534.2119318/94‑1 (MQ=60)
CGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGAT < SRR4302534.4679949/94‑1 (MQ=60)
GCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATT > SRR4302534.551376/1‑94 (MQ=60)
GCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATT < SRR4302534.2468234/94‑1 (MQ=60)
CCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCC > SRR4302534.741380/1‑94 (MQ=60)
CCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCC > SRR4302534.3459405/1‑94 (MQ=60)
CAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCGGGATTTCACGCCGCCATGATTCAA < SRR4302534.5337511/94‑1 (MQ=60)
CAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCA < SRR4302534.3647653/94‑1 (MQ=60)
AGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAG < SRR4302534.2397028/94‑1 (MQ=60)
CCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCA < SRR4302534.5390537/94‑1 (MQ=60)
CTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAG < SRR4302534.1180004/94‑1 (MQ=60)
CTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAG > SRR4302534.3258946/1‑94 (MQ=60)
CTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAG > SRR4302534.1555281/1‑94 (MQ=60)
TTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGT > SRR4302534.5926291/1‑94 (MQ=60)
TCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTG > SRR4302534.3227439/1‑94 (MQ=60)
CGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGG > SRR4302534.203665/1‑94 (MQ=60)
CGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGG < SRR4302534.1284933/94‑1 (MQ=60)
TTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCG > SRR4302534.3823016/1‑94 (MQ=60)
TTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCG < SRR4302534.2513956/94‑1 (MQ=60)
CATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCA < SRR4302534.5231105/94‑1 (MQ=60)
CATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCA < SRR4302534.353547/94‑1 (MQ=60)
CATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCA > SRR4302534.6625593/1‑94 (MQ=60)
CATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCA < SRR4302534.4379841/94‑1 (MQ=60)
CACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTT < SRR4302534.5886871/94‑1 (MQ=60)
CACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTT > SRR4302534.2227015/1‑94 (MQ=60)
CACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACCCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTT > SRR4302534.4131835/1‑94 (MQ=60)
ACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTT > SRR4302534.3997108/1‑94 (MQ=60)
CCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTT < SRR4302534.5107945/94‑1 (MQ=60)
CCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTT > SRR4302534.6580075/1‑94 (MQ=60)
CCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTT > SRR4302534.5576069/1‑94 (MQ=60)
CTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTC > SRR4302534.5520709/1‑94 (MQ=60)
TGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCT > SRR4302534.4506257/1‑94 (MQ=60)
GAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTC > SRR4302534.2535282/1‑94 (MQ=60)
GTCTGTTTTTGCTGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCA < SRR4302534.5064895/94‑1 (MQ=60)
GTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCA < SRR4302534.5065072/94‑1 (MQ=60)
GCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCAT < SRR4302534.1592134/94‑1 (MQ=60)
CTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATA > SRR4302534.386625/1‑94 (MQ=60)
TGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAA > SRR4302534.486164/1‑94 (MQ=60)
TGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAA > SRR4302534.3231347/1‑94 (MQ=60)
GTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAA > SRR4302534.5850901/1‑94 (MQ=60)
TTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAA > SRR4302534.2194890/1‑94 (MQ=60)
TTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATA < SRR4302534.1393202/94‑1 (MQ=60)
GCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAG < SRR4302534.352683/94‑1 (MQ=60)
GCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAG < SRR4302534.5905695/94‑1 (MQ=60)
CGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGC < SRR4302534.5658623/94‑1 (MQ=60)
CGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGC > SRR4302534.610835/1‑94 (MQ=60)
GGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCA > SRR4302534.2647297/1‑94 (MQ=60)
GATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAG < SRR4302534.1999192/94‑1 (MQ=60)
AAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGT < SRR4302534.5435312/94‑1 (MQ=60)
AAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTT > SRR4302534.1959613/1‑94 (MQ=60)
AAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTT > SRR4302534.2013264/1‑94 (MQ=60)
AAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTT < SRR4302534.403260/94‑1 (MQ=60)
AAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTT > SRR4302534.4380826/1‑94 (MQ=60)
AAAATCCTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTT < SRR4302534.1241348/94‑1 (MQ=60)
AAAATACTGGCTCACCTTACGCACAATACGCAGGCTTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTT > SRR4302534.6016997/1‑94 (MQ=60)
AATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTC < SRR4302534.2234520/94‑1 (MQ=60)
AATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTC > SRR4302534.5675203/1‑94 (MQ=60)
AATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTC > SRR4302534.903096/1‑94 (MQ=60)
TACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTT < SRR4302534.5657931/94‑1 (MQ=60)
TACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTT > SRR4302534.5025343/1‑94 (MQ=60)
TACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTT < SRR4302534.2392931/94‑1 (MQ=60)
TGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTG > SRR4302534.3676003/1‑94 (MQ=60)
TGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTG < SRR4302534.4409307/94‑1 (MQ=60)
CTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTT > SRR4302534.3689253/1‑94 (MQ=60)
CTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTT < SRR4302534.19639/94‑1 (MQ=60)
TCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTC < SRR4302534.1477592/94‑1 (MQ=60)
TCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTC < SRR4302534.1669346/94‑1 (MQ=60)
TCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTC < SRR4302534.259682/94‑1 (MQ=60)
TCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTC > SRR4302534.3057193/1‑94 (MQ=60)
TCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTC < SRR4302534.5558341/94‑1 (MQ=60)
CACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCG < SRR4302534.4047649/94‑1 (MQ=60)
ACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCTTAAAATAGAGCAGGTTTTCTTGTGGTTCGG < SRR4302534.6368899/94‑1 (MQ=60)
ACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGG < SRR4302534.956301/94‑1 (MQ=60)
ACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGG > SRR4302534.1710717/1‑94 (MQ=60)
ACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGG < SRR4302534.2608308/94‑1 (MQ=60)
ACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGG > SRR4302534.3897285/1‑94 (MQ=60)
CCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGA > SRR4302534.2613998/1‑94 (MQ=60)
CTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGAC > SRR4302534.1039649/1‑94 (MQ=60)
TACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGG > SRR4302534.200797/1‑94 (MQ=60)
CAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCG > SRR4302534.4353256/1‑94 (MQ=60)
CAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCG > SRR4302534.1278726/1‑94 (MQ=60)
CAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCG < SRR4302534.2490479/94‑1 (MQ=60)
ATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGC < SRR4302534.5151846/94‑1 (MQ=60)
ATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGC < SRR4302534.1646009/94‑1 (MQ=60)
ATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGC < SRR4302534.2924071/94‑1 (MQ=60)
TACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCG < SRR4302534.4921314/94‑1 (MQ=60)
ACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGC > SRR4302534.2275675/1‑94 (MQ=60)
CAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCT > SRR4302534.3523561/1‑94 (MQ=60)
GGATTTCACGCCGCTATGATTCCAGCAGTGGCTCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTC < SRR4302534.3243362/94‑1 (MQ=60)
GGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTC > SRR4302534.2363074/1‑94 (MQ=60)
GATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCA > SRR4302534.1542968/1‑94 (MQ=60)
ATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAG < SRR4302534.6443554/94‑1 (MQ=60)
TTCACGCCGCCATGAGTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCA < SRR4302534.2652159/94‑1 (MQ=60)
CACCCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATATAGCAGGTTTTCTTGTGGTTCGGACCGGTAGCGGCGCGCTTCAGCAAC > SRR4302534.1219421/1‑94 (MQ=60)
CGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCG < SRR4302534.1475098/94‑1 (MQ=60)
CGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTT > SRR4302534.391948/1‑94 (MQ=60)
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CAGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCTGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTT > NC_000913/1235599‑1235785
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
