Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,235,692 |
T→C |
Q258R (CAG→CGG) |
ycgB ← |
putative sporulation protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,235,692 | 0 | T | C | 99.6%
| 858.8
/ ‑5.1
| 252 | Q258R (CAG→CGG) | ycgB | putative sporulation protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (127/124); total (128/124) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.89e-01 |
Only 100 of 266 total aligned reads displayed.
AAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCTGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACC > NC_000913/1235602‑1235781
|
aaGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCAcgccgc < 1:1915938/93‑1 (MQ=255)
aGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTAGCTCACCTTACGCACAATACGCAGGCTTTCACACCGcc > 1:2417115/1‑93 (MQ=255)
ggTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCa < 1:1026491/93‑1 (MQ=255)
ggTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCa < 1:3855570/93‑1 (MQ=255)
ggTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCa > 2:8567952/1‑93 (MQ=255)
gTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATCCGCAGGATTTCACGCCGCCAt < 1:3594550/93‑1 (MQ=255)
cGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGa > 1:1208441/1‑93 (MQ=255)
cGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGa < 1:5469565/93‑1 (MQ=255)
cGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGa < 2:442212/93‑1 (MQ=255)
gCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGAt < 2:7683784/93‑1 (MQ=255)
ccAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTc > 2:2272901/1‑93 (MQ=255)
cAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTcc < 1:2166681/93‑1 (MQ=255)
cAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTcc > 1:1539388/1‑93 (MQ=255)
aGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCca > 2:3362780/1‑93 (MQ=255)
aGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCca > 1:1381447/1‑93 (MQ=255)
aGCCTTCGTTCATCACCTGAGGCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCca > 2:5028685/1‑93 (MQ=255)
ccTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcagc > 1:1672868/1‑93 (MQ=255)
cTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCaagta > 2:6822290/1‑91 (MQ=255)
ttCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcagcag > 1:5917709/1‑93 (MQ=255)
ttCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcagcag < 2:326639/93‑1 (MQ=255)
ttCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCcagcag > 1:4354408/1‑93 (MQ=255)
tgTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTg < 2:6311615/92‑1 (MQ=255)
cGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTg < 1:3315023/93‑1 (MQ=255)
gTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTgg > 1:2158775/1‑93 (MQ=255)
ttCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGgc > 2:8640623/1‑93 (MQ=255)
ttCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGgc < 2:5480644/93‑1 (MQ=255)
tcatcaCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGgcg > 2:450376/1‑93 (MQ=255)
atcaCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCa < 1:1758619/93‑1 (MQ=255)
atcaCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGACGCCATGATTCCAGCAGTGGCGCa > 1:6766317/1‑93 (MQ=255)
tcaCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAt < 2:540623/93‑1 (MQ=255)
tcaCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAt > 2:1882875/1‑93 (MQ=255)
tcaCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAt < 2:5724998/93‑1 (MQ=255)
aCCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAttt > 1:6156078/1‑93 (MQ=255)
ccTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAtttt > 1:2864093/1‑93 (MQ=255)
cTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAttttt > 1:975599/1‑93 (MQ=255)
aGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTtctc < 1:7114390/93‑1 (MQ=255)
aGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTtctc > 2:3765027/1‑93 (MQ=255)
aGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTtctc < 1:297999/93‑1 (MQ=255)
gTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTcc < 1:6609044/93‑1 (MQ=255)
gTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTcc < 2:5650622/93‑1 (MQ=255)
gTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTcc < 2:1220520/93‑1 (MQ=255)
tCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCa > 2:6711721/1‑93 (MQ=255)
cTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCAt > 1:8311750/1‑93 (MQ=255)
tGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATa < 2:353531/93‑1 (MQ=255)
tGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATa > 1:5395797/1‑93 (MQ=255)
gTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATaa > 2:720621/1‑93 (MQ=255)
tttttGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATaaa > 2:8809882/1‑93 (MQ=255)
tttGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAAt > 2:6455143/1‑93 (MQ=255)
ttGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATa > 1:7736423/1‑93 (MQ=255)
ttGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATa < 2:571062/93‑1 (MQ=255)
ttGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATa < 2:6024071/93‑1 (MQ=255)
ttGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATa > 1:5598379/1‑93 (MQ=255)
ggATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGc > 1:8086105/1‑93 (MQ=255)
ggATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATATCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGc < 1:8515591/93‑1 (MQ=255)
aTAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAg < 2:1346537/93‑1 (MQ=255)
tAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAgg < 1:4610519/93‑1 (MQ=255)
aaaaaTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGt < 2:7331770/93‑1 (MQ=255)
aaaaTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGtt < 1:4870798/93‑1 (MQ=255)
aaaTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGttt > 2:2759563/1‑93 (MQ=255)
aTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTc > 1:378547/1‑93 (MQ=255)
aTACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTc < 2:3106477/93‑1 (MQ=255)
tACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCt > 2:6852281/1‑93 (MQ=255)
cTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTtg > 1:1997100/1‑93 (MQ=255)
cTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTtg < 2:6239362/93‑1 (MQ=255)
cTGGCTCAACTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTtg < 1:3961225/93‑1 (MQ=255)
tGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTtgt > 1:3232989/1‑93 (MQ=255)
gCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTgg < 2:2514468/93‑1 (MQ=255)
cTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGt < 1:1433261/93‑1 (MQ=255)
tCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGtt < 2:6571827/93‑1 (MQ=255)
cACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTc < 2:3851342/93‑1 (MQ=255)
cccTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcg < 1:1658751/92‑1 (MQ=255)
aCCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcg > 1:2661487/1‑93 (MQ=255)
ccTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgg < 1:721604/93‑1 (MQ=255)
ccTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgg > 2:7758837/1‑93 (MQ=255)
cTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgga < 1:7861961/93‑1 (MQ=255)
cTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgga > 1:1380440/1‑93 (MQ=255)
cTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgga < 1:8436450/93‑1 (MQ=255)
cTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgga < 1:6095865/93‑1 (MQ=255)
cTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcgga > 2:164986/1‑93 (MQ=255)
ttACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcggac < 1:4795042/93‑1 (MQ=255)
ttACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcggac > 1:3678078/1‑93 (MQ=255)
ttACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcggac > 1:5313747/1‑93 (MQ=255)
aCGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTcggacgg > 2:4963814/1‑93 (MQ=255)
ccaATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAg < 1:5145319/92‑1 (MQ=255)
acaATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAg < 2:4869565/93‑1 (MQ=255)
caATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgc > 1:6721279/1‑93 (MQ=255)
caATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgc > 2:6953496/1‑93 (MQ=255)
aaTACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgcg < 2:108340/93‑1 (MQ=255)
aTACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgcgg > 2:5858758/1‑93 (MQ=255)
tACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAgcggg > 2:3966518/1‑92 (MQ=255)
cGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGgcgc > 2:518282/1‑93 (MQ=255)
aTTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCa < 1:6530167/93‑1 (MQ=255)
ttCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGc < 1:3054475/93‑1 (MQ=255)
tCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCa > 1:7405085/1‑93 (MQ=255)
tCACGCCGCCAGGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGGTGTCTTGTGGTTCGGACGGATAGCGGCGTGCTgcagca > 2:7794196/1‑93 (MQ=255)
cACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCaa < 2:2992469/93‑1 (MQ=255)
cACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCaa > 1:5042890/1‑93 (MQ=255)
aCGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAAc > 1:7336788/1‑93 (MQ=255)
aCGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAAc < 2:4100551/93‑1 (MQ=255)
cgccgcCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAAcc > 2:8270884/1‑93 (MQ=255)
|
AAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCTGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACC > NC_000913/1235602‑1235781
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CAGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCTGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTT > NC_000913/1235599‑1235785
|
CAGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCC > SRR4302541.3924677/1‑94 (MQ=60)
CAGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCC < SRR4302541.5533350/94‑1 (MQ=60)
CAGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCC > SRR4302541.2307865/1‑94 (MQ=60)
CAGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCC > SRR4302541.638274/1‑94 (MQ=60)
AAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCC < SRR4302541.1934368/94‑1 (MQ=60)
AAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTAGCTCACCTTACGCACAATACGCAGGCTTTCACACCGCC > SRR4302541.2440932/1‑94 (MQ=60)
GGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCAT < SRR4302541.1035976/94‑1 (MQ=60)
GGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCAT < SRR4302541.3894362/94‑1 (MQ=60)
GGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCAT < SRR4302541.5413481/94‑1 (MQ=60)
GGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCAT > SRR4302541.6715133/1‑94 (MQ=60)
TTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTTCGGATAAAAATACTGGCTCACCTTACTCACAATACGCAGGATTTCACTCCGCCATG > SRR4302541.7871051/1‑94 (MQ=60)
GTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATCCGCAGGATTTCACGCCGCCATG < SRR4302541.3630994/94‑1 (MQ=60)
GTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATG > SRR4302541.7871052/1‑94 (MQ=60)
TCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGA > SRR4302541.1220206/1‑94 (MQ=60)
CGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGAT < SRR4302541.8854441/94‑1 (MQ=60)
CGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGAT < SRR4302541.5525666/94‑1 (MQ=60)
CCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTC > SRR4302541.1529177/1‑94 (MQ=60)
CCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTC > SRR4302541.5729564/1‑94 (MQ=60)
CCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCC > SRR4302541.1554854/1‑94 (MQ=60)
CCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCC < SRR4302541.8501476/94‑1 (MQ=60)
CCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCC > SRR4302541.6713592/1‑94 (MQ=60)
CAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCA > SRR4302541.1395010/1‑94 (MQ=60)
CAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCA < SRR4302541.7437474/94‑1 (MQ=60)
CAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCA < SRR4302541.2187634/94‑1 (MQ=60)
CAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCA < SRR4302541.2187633/94‑1 (MQ=60)
CAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCA > SRR4302541.7340712/1‑94 (MQ=60)
CAGCATTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCA > SRR4302541.3827447/1‑94 (MQ=60)
AGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAG > SRR4302541.4048674/1‑94 (MQ=60)
GCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGC > SRR4302541.1689346/1‑94 (MQ=60)
CTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAG > SRR4302541.1893073/1‑94 (MQ=60)
CTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAG > SRR4302541.4397899/1‑94 (MQ=60)
CTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAG > SRR4302541.5977958/1‑94 (MQ=60)
CTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAG > SRR4302541.5730869/1‑94 (MQ=60)
TCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTG < SRR4302541.5603486/94‑1 (MQ=60)
TCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTAACGCCGCCATGATTCCAGCAGTG < SRR4302541.1543952/94‑1 (MQ=60)
CGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGG > SRR4302541.2179647/1‑94 (MQ=60)
CGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGG < SRR4302541.3348292/94‑1 (MQ=60)
CGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGATCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGG > SRR4302541.7287690/1‑94 (MQ=60)
GTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGC < SRR4302541.8826808/94‑1 (MQ=60)
TTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCG > SRR4302541.6822004/1‑94 (MQ=60)
TCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGC < SRR4302541.2671465/94‑1 (MQ=60)
TCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGC > SRR4302541.196416/1‑94 (MQ=60)
CATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCA > SRR4302541.1982114/1‑94 (MQ=60)
CATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGACGCCATGATTCCAGCAGTGGCGCA > SRR4302541.6838674/1‑94 (MQ=60)
ATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAT < SRR4302541.1688631/94‑1 (MQ=60)
ATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAT > SRR4302541.3854635/1‑94 (MQ=60)
ATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAT > SRR4302541.1688047/1‑94 (MQ=60)
ATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCAT < SRR4302541.1775750/94‑1 (MQ=60)
TCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATT > SRR4302541.3758241/1‑94 (MQ=60)
TCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATT > SRR4302541.3718540/1‑94 (MQ=60)
CACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTT > SRR4302541.6218983/1‑94 (MQ=60)
CACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTT < SRR4302541.6820266/94‑1 (MQ=60)
CACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTT < SRR4302541.1610642/94‑1 (MQ=60)
ACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTT < SRR4302541.5269803/94‑1 (MQ=60)
ACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTT > SRR4302541.2892872/1‑94 (MQ=60)
CCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTT < SRR4302541.5203942/94‑1 (MQ=60)
CCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTT > SRR4302541.984747/1‑94 (MQ=60)
GAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTCGCGCATTTTTCTC > SRR4302541.319029/1‑94 (MQ=60)
AGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCC < SRR4302541.7190164/94‑1 (MQ=60)
AGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCC < SRR4302541.300607/94‑1 (MQ=60)
AGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCC > SRR4302541.5388365/1‑94 (MQ=60)
GTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCA < SRR4302541.6676768/94‑1 (MQ=60)
TCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCAT > SRR4302541.8402088/1‑94 (MQ=60)
TCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCAT > SRR4302541.6630732/1‑94 (MQ=60)
CTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATA > SRR4302541.5518041/1‑94 (MQ=60)
CTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATA > SRR4302541.5451168/1‑94 (MQ=60)
CTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATA > SRR4302541.1394100/1‑94 (MQ=60)
TGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAA < SRR4302541.6245370/94‑1 (MQ=60)
GTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAA > SRR4302541.1736560/1‑94 (MQ=60)
GTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAA > SRR4302541.3274557/1‑94 (MQ=60)
TTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAA < SRR4302541.6184869/94‑1 (MQ=60)
TTTTTGCGCATAAAAAGACTGGCTAACATTACGCCCAATACGCAGGATTTCACGCCGCCATGATCCCAGCAGTGGCGCATTTTTCTCCATAAAA < SRR4302541.4899117/94‑1 (MQ=60)
TTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAAT < SRR4302541.2743124/94‑1 (MQ=60)
TTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAAT < SRR4302541.2492359/94‑1 (MQ=60)
TTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAAT < SRR4302541.1174517/94‑1 (MQ=60)
TTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATA > SRR4302541.5655687/1‑94 (MQ=60)
TTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATA > SRR4302541.7818727/1‑94 (MQ=60)
TGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGA > SRR4302541.2159065/1‑94 (MQ=60)
GCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAG < SRR4302541.5632598/94‑1 (MQ=60)
CGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGC > SRR4302541.8174760/1‑94 (MQ=60)
GGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCA < SRR4302541.2225973/94‑1 (MQ=60)
GGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATATCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCA < SRR4302541.8607253/94‑1 (MQ=60)
ATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGG < SRR4302541.7289750/94‑1 (MQ=60)
TAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGT < SRR4302541.6125812/94‑1 (MQ=60)
TAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGT < SRR4302541.4657346/94‑1 (MQ=60)
TAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGT > SRR4302541.1224004/1‑94 (MQ=60)
AAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTT < SRR4302541.7143198/94‑1 (MQ=60)
AAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTT < SRR4302541.4920483/94‑1 (MQ=60)
AAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTT < SRR4302541.4920482/94‑1 (MQ=60)
AATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTC > SRR4302541.382033/1‑94 (MQ=60)
TACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTT < SRR4302541.4489183/94‑1 (MQ=60)
TACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTT > SRR4302541.8208638/1‑94 (MQ=60)
ACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTG > SRR4302541.2016430/1‑94 (MQ=60)
ACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTG < SRR4302541.2897265/94‑1 (MQ=60)
CTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGT < SRR4302541.1446265/94‑1 (MQ=60)
CTGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGT > SRR4302541.3265633/1‑94 (MQ=60)
CTGGCTCAACTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGT < SRR4302541.4000570/94‑1 (MQ=60)
TGGCTCCCCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTG < SRR4302541.1006633/94‑1 (MQ=60)
TGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTG > SRR4302541.3020488/1‑94 (MQ=60)
TGGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTG < SRR4302541.3281690/94‑1 (MQ=60)
GGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGG > SRR4302541.733402/1‑94 (MQ=60)
GGCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGG < SRR4302541.8322486/94‑1 (MQ=60)
GCTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGT < SRR4302541.1298573/94‑1 (MQ=60)
CTCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTT < SRR4302541.1447194/94‑1 (MQ=60)
TCACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTC > SRR4302541.6583054/1‑94 (MQ=60)
CACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCG > SRR4302541.2687953/1‑94 (MQ=60)
CACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCG > SRR4302541.5021595/1‑94 (MQ=60)
CCCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGG < SRR4302541.1675117/94‑1 (MQ=60)
ACCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGG < SRR4302541.8535709/94‑1 (MQ=60)
CCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGA > SRR4302541.1394000/1‑94 (MQ=60)
CCTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGA < SRR4302541.728426/94‑1 (MQ=60)
CTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGAC < SRR4302541.8527585/94‑1 (MQ=60)
CTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGAC > SRR4302541.7735099/1‑94 (MQ=60)
CTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGAC > SRR4302541.5368447/1‑94 (MQ=60)
CTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGAC < SRR4302541.7948317/94‑1 (MQ=60)
CTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGAC < SRR4302541.6158095/94‑1 (MQ=60)
CTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGAC > SRR4302541.5132715/1‑94 (MQ=60)
CTTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGAC > SRR4302541.3715338/1‑94 (MQ=60)
TTACGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACG < SRR4302541.4843960/94‑1 (MQ=60)
CGCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGAT < SRR4302541.2103772/94‑1 (MQ=60)
GCACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATA > SRR4302541.8420076/1‑94 (MQ=60)
CACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAG > SRR4302541.3708022/1‑94 (MQ=60)
CCAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGC < SRR4302541.5198243/94‑1 (MQ=60)
ACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGC > SRR4302541.6792999/1‑94 (MQ=60)
ACAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGC > SRR4302541.6206515/1‑94 (MQ=60)
CAATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCG < SRR4302541.2249042/94‑1 (MQ=60)
AATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGG > SRR4302541.3602669/1‑94 (MQ=60)
ATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGC < SRR4302541.7780224/94‑1 (MQ=60)
ATACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGC < SRR4302541.8101775/94‑1 (MQ=60)
TCGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGC < SRR4302541.475066/94‑1 (MQ=60)
ACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGC > SRR4302541.1410719/1‑94 (MQ=60)
ACGCAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGC < SRR4302541.393302/94‑1 (MQ=60)
CAGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCT > SRR4302541.4551838/1‑94 (MQ=60)
AGGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTT > SRR4302541.4301654/1‑94 (MQ=60)
GGATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTC > SRR4302541.1773860/1‑94 (MQ=60)
GGATTCCCCGCCGCCATGATTCGAGCAGTGGCGCATTTTTCTGCATAAAATAGAGCAGTTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTC < SRR4302541.3028851/94‑1 (MQ=60)
ATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAG > SRR4302541.2978541/1‑94 (MQ=60)
ATTTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAG < SRR4302541.6596826/94‑1 (MQ=60)
TTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCA < SRR4302541.3085403/94‑1 (MQ=60)
TTCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCA > SRR4302541.7484288/1‑94 (MQ=60)
TCACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAA > SRR4302541.5094782/1‑94 (MQ=60)
CACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAAC > SRR4302541.7415131/1‑94 (MQ=60)
ACGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACC > SRR4302541.4946215/1‑94 (MQ=60)
CGCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCG < SRR4302541.3601253/94‑1 (MQ=60)
GCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGT > SRR4302541.663336/1‑94 (MQ=60)
GCCGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGT < SRR4302541.8868500/94‑1 (MQ=60)
CGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTT < SRR4302541.1239668/94‑1 (MQ=60)
CGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTT > SRR4302541.6553081/1‑94 (MQ=60)
CGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTT < SRR4302541.2021594/94‑1 (MQ=60)
CGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTT < SRR4302541.1036328/94‑1 (MQ=60)
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CAGAAGGTCGCCCAGCCTTCGTTCATCACCTGAGTCTGTTTTTGCGGATAAAAATACTGGCTCACCTTACGCACAATACGCAGGATTTCACGCTGCCATGATTCCAGCAGTGGCGCATTTTTCTCCATAAAATAGAGCAGGTTTTCTTGTGGTTCGGACGGATAGCGGCGCGCTTCAGCAACCGTTT > NC_000913/1235599‑1235785
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
