Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,252,715 |
A→G |
S821P (TCC→CCC) |
b1202 ← |
putative adhesion and penetration protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,252,715 | 0 | A | G | 99.5%
| 682.2
/ NA
| 201 | S821P (TCC→CCC) | b1202 | putative adhesion and penetration protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (78/122); minor base T (0/1); total (78/123) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 204 total aligned reads displayed.
GCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTA > NC_000913/1252626‑1252804
|
gCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAg > 2:291948/1‑93 (MQ=255)
gCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAg > 1:3908615/1‑93 (MQ=255)
gCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAg < 1:5461509/93‑1 (MQ=255)
aTTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGtt < 1:1967737/93‑1 (MQ=255)
ttACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTg > 1:5944001/1‑93 (MQ=255)
aCTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGaa > 2:6148789/1‑93 (MQ=255)
cTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAAc < 2:4306222/93‑1 (MQ=255)
cTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAAc < 1:4833088/93‑1 (MQ=255)
cGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACct > 1:125907/1‑93 (MQ=255)
gCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACctc > 2:5967339/1‑93 (MQ=255)
gCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACctc < 2:5630269/93‑1 (MQ=255)
ccTTCATAGTCATCTCATTCTGGTGTCTGTATGTAAGCTGGGTGTGCGGCTCTATATAGAACCCATAACCAGTAGGGGTCAGGTTGAACctct < 1:6082655/93‑1 (MQ=255)
ccTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACctct < 1:4681111/93‑1 (MQ=255)
ccTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACctct < 1:2733868/93‑1 (MQ=255)
cTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTg > 2:4182638/1‑93 (MQ=255)
cTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTg > 2:1807205/1‑93 (MQ=255)
cTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTg > 1:5150921/1‑93 (MQ=255)
ttCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGc > 1:1090948/1‑93 (MQ=255)
ttCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGc < 2:478164/93‑1 (MQ=255)
tCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGcc < 2:3113057/93‑1 (MQ=255)
tCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGcc < 1:3223893/93‑1 (MQ=255)
tCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGcc < 2:3382530/93‑1 (MQ=255)
taTAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGccc < 2:1393474/92‑1 (MQ=255)
aTAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCg > 1:1019250/1‑93 (MQ=255)
aTAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCg > 2:6282827/1‑93 (MQ=255)
aGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGc < 2:2355087/93‑1 (MQ=255)
gTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCt < 2:3375625/93‑1 (MQ=255)
gTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCt < 1:3446064/93‑1 (MQ=255)
gTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCt < 2:784812/93‑1 (MQ=255)
cacctcATTCTGGTGGTTGTATGTAACCTGGG‑TTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTcc < 2:2428385/90‑1 (MQ=255)
cATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTc < 2:3617954/93‑1 (MQ=255)
cATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTc > 2:2745266/1‑93 (MQ=255)
cATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTc > 2:646231/1‑93 (MQ=255)
tctcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCa < 1:5196641/93‑1 (MQ=255)
ctcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCTGCTTCCAg < 1:6364476/93‑1 (MQ=255)
ctcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAg < 1:3835200/93‑1 (MQ=255)
ctcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAg < 1:828273/93‑1 (MQ=255)
tcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAgg < 1:5907087/93‑1 (MQ=255)
tcATACTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAgg < 1:5795782/93‑1 (MQ=255)
cATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCCggg < 1:3194031/93‑1 (MQ=255)
cATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAggg > 2:4317738/1‑93 (MQ=255)
aTTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGga > 1:2186658/1‑93 (MQ=255)
ggtggCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGc > 1:2814315/1‑93 (MQ=255)
gtggCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCt < 2:87552/93‑1 (MQ=255)
ggCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTca > 2:1949650/1‑93 (MQ=255)
tatgtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattcca > 1:3544308/1‑93 (MQ=255)
tgtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattccatt < 1:5317716/93‑1 (MQ=255)
gtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattccattc < 1:1837511/93‑1 (MQ=255)
taAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCg < 1:1809310/93‑1 (MQ=255)
gCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAg > 1:3493133/1‑93 (MQ=255)
gggTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGc > 1:1533979/1‑93 (MQ=255)
gggTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGc < 1:296603/93‑1 (MQ=255)
gTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCg > 1:3048529/1‑93 (MQ=255)
tttGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGt > 1:5715565/1‑93 (MQ=255)
tttGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGt < 1:4068538/93‑1 (MQ=255)
ttGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGtt < 1:5247263/93‑1 (MQ=255)
tGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTg < 1:5230345/93‑1 (MQ=255)
tGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTg < 2:2211725/93‑1 (MQ=255)
gCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTgg > 2:1129899/1‑93 (MQ=255)
gCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTgg < 2:2965506/93‑1 (MQ=255)
gCTCTATATAGAACCCATAACCAGTAGGGGGCTGGTTGACCCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGt < 1:4287428/93‑1 (MQ=255)
gCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGt < 1:4911500/93‑1 (MQ=255)
atataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACg < 1:1727950/93‑1 (MQ=255)
tataGAACCCATAACCAGTAGTGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGc < 1:226694/93‑1 (MQ=255)
tataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGc < 2:4940966/93‑1 (MQ=255)
tataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGc < 2:5508278/93‑1 (MQ=255)
ataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGcc < 1:4975535/93‑1 (MQ=255)
ataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGcc > 2:3418931/1‑93 (MQ=255)
aGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgt < 2:3203761/93‑1 (MQ=255)
aGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgt > 2:3308462/1‑93 (MQ=255)
aGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgt < 2:3073866/93‑1 (MQ=255)
aGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgt < 2:5319755/93‑1 (MQ=255)
aaaCCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgtt < 1:4144846/92‑1 (MQ=255)
aCCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgttgt > 2:1529317/1‑93 (MQ=255)
ccATAGTCATTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTc < 1:1396998/93‑1 (MQ=255)
ccATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgttgttt > 2:1456051/1‑92 (MQ=255)
ccATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTc < 2:3761594/93‑1 (MQ=255)
ccATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGCCGTTAACGCCGTTGTTc > 1:458156/1‑93 (MQ=255)
cATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCt > 2:5418050/1‑93 (MQ=255)
cATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCt < 2:5068906/93‑1 (MQ=255)
cATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCt < 1:3605137/93‑1 (MQ=255)
aTAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTg < 1:4661964/93‑1 (MQ=255)
aTAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTg < 1:4053243/93‑1 (MQ=255)
tAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGa < 2:4615801/93‑1 (MQ=255)
aaCCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGAc > 1:61988/1‑93 (MQ=255)
aaCCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGAc < 2:6401419/93‑1 (MQ=255)
aCCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACt > 2:4749623/1‑93 (MQ=255)
ccAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTg < 1:1248842/93‑1 (MQ=255)
ccAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTg < 2:1788975/93‑1 (MQ=255)
ccAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTg < 2:5578341/93‑1 (MQ=255)
ccAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTg < 1:5826517/93‑1 (MQ=255)
cAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTGCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGt > 2:4218427/1‑93 (MQ=255)
cAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGt < 2:3017865/93‑1 (MQ=255)
aGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTc < 2:224072/93‑1 (MQ=255)
gTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTcc < 1:3637678/93‑1 (MQ=255)
tAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGTCTGTCCa > 2:3781878/1‑93 (MQ=255)
tAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCa < 1:6149687/93‑1 (MQ=255)
aGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAg > 2:4328375/1‑93 (MQ=255)
ggggGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGt < 1:555176/93‑1 (MQ=255)
ggggGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGt > 2:404227/1‑93 (MQ=255)
|
GCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTA > NC_000913/1252626‑1252804
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACGTG > NC_000913/1252622‑1252808
|
TGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGG < SRR4302534.6107401/94‑1 (MQ=60)
GGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAG > SRR4302534.962797/1‑94 (MQ=60)
GGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAG > SRR4302534.4013431/1‑94 (MQ=60)
GGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAG > SRR4302534.1443914/1‑94 (MQ=60)
GCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGG < SRR4302534.5608707/94‑1 (MQ=60)
CCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGT > SRR4302534.4806648/1‑94 (MQ=60)
CCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGT > SRR4302534.2002479/1‑94 (MQ=60)
CATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTT > SRR4302534.6117987/1‑94 (MQ=60)
ATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTG < SRR4302534.2019246/94‑1 (MQ=60)
ATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTG > SRR4302534.6105391/1‑94 (MQ=60)
TACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAA > SRR4302534.328370/1‑94 (MQ=60)
ACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAAC > SRR4302534.3836128/1‑94 (MQ=60)
CTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACC < SRR4302534.4964214/94‑1 (MQ=60)
TCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCT < SRR4302534.597215/94‑1 (MQ=60)
TCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCT > SRR4302534.129237/1‑94 (MQ=60)
TCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCT < SRR4302534.2772441/94‑1 (MQ=60)
GCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAAACTCT > SRR4302534.1350945/1‑94 (MQ=60)
TCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTG > SRR4302534.5289874/1‑94 (MQ=60)
CCTTCATAGTCATCTCATTCTGGTGTCTGTATGTAAGCTGGGTGTGCGGCTCTATATAGAACCCATAACCAGTAGGGGTCAGGTTGAACCTCTG < SRR4302534.6248067/94‑1 (MQ=60)
CCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTG > SRR4302534.5695930/1‑94 (MQ=60)
CCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTG < SRR4302534.2805942/94‑1 (MQ=60)
CCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTG < SRR4302534.4808209/94‑1 (MQ=60)
CTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGC > SRR4302534.1226948/1‑94 (MQ=60)
CTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGC > SRR4302534.1119332/1‑94 (MQ=60)
TCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCC < SRR4302534.3309520/94‑1 (MQ=60)
TCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCC < SRR4302534.5300298/94‑1 (MQ=60)
TCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCC < SRR4302534.6628951/94‑1 (MQ=60)
TCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCC < SRR4302534.4767264/94‑1 (MQ=60)
CATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCG < SRR4302534.5380185/94‑1 (MQ=60)
CATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCG > SRR4302534.1045487/1‑94 (MQ=60)
CATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCG < SRR4302534.6252788/94‑1 (MQ=60)
GTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTT < SRR4302534.4250237/94‑1 (MQ=60)
GTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTT < SRR4302534.3538676/94‑1 (MQ=60)
TCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTC < SRR4302534.4481208/94‑1 (MQ=60)
CATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCC > SRR4302534.1651430/1‑94 (MQ=60)
CATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCC > SRR4302534.3056771/1‑94 (MQ=60)
ATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCA < SRR4302534.361642/94‑1 (MQ=60)
ATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCA > SRR4302534.5789062/1‑94 (MQ=60)
TCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAG < SRR4302534.5336780/94‑1 (MQ=60)
CTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCTGCTTCCAGG < SRR4302534.6536333/94‑1 (MQ=60)
CTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGG < SRR4302534.849117/94‑1 (MQ=60)
CTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGG < SRR4302534.3938194/94‑1 (MQ=60)
CTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGG > SRR4302534.2823330/1‑94 (MQ=60)
TCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGG < SRR4302534.6067484/94‑1 (MQ=60)
TCATACTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGG < SRR4302534.5953040/94‑1 (MQ=60)
CATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCCGGGA < SRR4302534.3278676/94‑1 (MQ=60)
CATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGA > SRR4302534.2244468/1‑94 (MQ=60)
CTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTNTANATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATG < SRR4302534.5341685/94‑1 (MQ=60)
TGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGC > SRR4302534.1288733/1‑94 (MQ=60)
TGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGC > SRR4302534.2888300/1‑94 (MQ=60)
GGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCT < SRR4302534.3693316/94‑1 (MQ=60)
GGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCT > SRR4302534.4983717/1‑94 (MQ=60)
GGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCT < SRR4302534.6459052/94‑1 (MQ=60)
CTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTC < SRR4302534.5060751/94‑1 (MQ=60)
CTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTC > SRR4302534.59017/1‑94 (MQ=60)
TGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCC < SRR4302534.34663/94‑1 (MQ=60)
GTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCA > SRR4302534.3639644/1‑94 (MQ=60)
TGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTC < SRR4302534.5461156/94‑1 (MQ=60)
GTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCG < SRR4302534.1885278/94‑1 (MQ=60)
TAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGC < SRR4302534.1856291/94‑1 (MQ=60)
AGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAG > SRR4302534.3587039/1‑94 (MQ=60)
AGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAG < SRR4302534.4865566/94‑1 (MQ=60)
GCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGT < SRR4302534.3731754/94‑1 (MQ=60)
CTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTG > SRR4302534.1062162/1‑94 (MQ=60)
TGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGC > SRR4302534.1574213/1‑94 (MQ=60)
GGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCC < SRR4302534.304271/94‑1 (MQ=60)
GGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCG > SRR4302534.3128506/1‑94 (MQ=60)
GGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCA < SRR4302534.4068275/94‑1 (MQ=60)
GTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGT > SRR4302534.5870417/1‑94 (MQ=60)
TTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTT < SRR4302534.4177702/94‑1 (MQ=60)
TTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTT < SRR4302534.5525049/94‑1 (MQ=60)
TTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTG < SRR4302534.6512636/94‑1 (MQ=60)
TTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTG < SRR4302534.5389005/94‑1 (MQ=60)
TGGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTG < SRR4302534.5406826/94‑1 (MQ=60)
TGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGG < SRR4302534.5371549/94‑1 (MQ=60)
CGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGACGTTGGCG > SRR4302534.4169198/1‑94 (MQ=60)
GCTCTATATAGAACCCATAACCAGTAGGGGGCTGGTTGACCCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTT < SRR4302534.4403579/94‑1 (MQ=60)
GCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTT < SRR4302534.5044610/94‑1 (MQ=60)
CTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAAC < SRR4302534.2074505/94‑1 (MQ=60)
ATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGC < SRR4302534.1772817/94‑1 (MQ=60)
TATAGAACCCATAACCAGTAGTGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCC < SRR4302534.232612/94‑1 (MQ=60)
ATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCG < SRR4302534.5110225/94‑1 (MQ=60)
TAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGT < SRR4302534.2264384/94‑1 (MQ=60)
GAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTG < SRR4302534.3972710/94‑1 (MQ=60)
AAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTG < SRR4302534.4256712/94‑1 (MQ=60)
ACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTT > SRR4302534.355450/1‑94 (MQ=60)
CCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGCCGTTAACGCCGTTGTTC > SRR4302534.469739/1‑94 (MQ=60)
ccatagtcatTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCT < SRR4302534.1433755/84‑1 (MQ=60)
CCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCT > SRR4302534.4130781/1‑94 (MQ=60)
CCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCT < SRR4302534.180979/94‑1 (MQ=60)
CATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTG < SRR4302534.3702079/94‑1 (MQ=60)
CATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTG > SRR4302534.6100317/1‑94 (MQ=60)
CATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTG < SRR4302534.3233718/94‑1 (MQ=60)
ATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGA < SRR4302534.4788533/94‑1 (MQ=60)
ATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGA < SRR4302534.4161959/94‑1 (MQ=60)
ATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGA > SRR4302534.514215/1‑94 (MQ=60)
TAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGAC > SRR4302534.63677/1‑94 (MQ=60)
AACCAGTAGGGGGCAAGATGAACCTCTGCCCGGCCTCCACGGAGATGCTCATTCCATTCGCAGTGCCGTTGGAGTTAATGCCCTTGTTCTGACT > SRR4302534.4652935/1‑94 (MQ=60)
CCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGT < SRR4302534.1281756/94‑1 (MQ=60)
CCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGT < SRR4302534.5984669/94‑1 (MQ=60)
CAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTC < SRR4302534.1857569/94‑1 (MQ=60)
CGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCC < SRR4302534.6357348/94‑1 (MQ=60)
AGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCC < SRR4302534.292974/94‑1 (MQ=60)
GTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCA < SRR4302534.3735448/94‑1 (MQ=60)
TAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAG < SRR4302534.6316974/94‑1 (MQ=60)
TAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAG > SRR4302534.4368521/1‑94 (MQ=60)
AGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGT > SRR4302534.5983653/1‑94 (MQ=60)
GGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTA < SRR4302534.568861/94‑1 (MQ=60)
GGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACG < SRR4302534.2055887/94‑1 (MQ=60)
GGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACG < SRR4302534.2677363/94‑1 (MQ=60)
GGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACG < SRR4302534.5476330/94‑1 (MQ=60)
GGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACG < SRR4302534.4641936/94‑1 (MQ=60)
GCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACGTG < SRR4302534.2438245/94‑1 (MQ=60)
GCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACGTG < SRR4302534.1806454/94‑1 (MQ=60)
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TGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACGTG > NC_000913/1252622‑1252808
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
