Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,252,715 |
A→G |
S821P (TCC→CCC) |
b1202 ← |
putative adhesion and penetration protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,252,715 | 0 | A | G | 99.1%
| 739.7
/ NA
| 217 | S821P (TCC→CCC) | b1202 | putative adhesion and penetration protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (119/96); minor base T (1/1); total (120/97) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 228 total aligned reads displayed.
GGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTA > NC_000913/1252625‑1252804
|
ggCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCa < 2:3978318/93‑1 (MQ=255)
gCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAg > 2:5236618/1‑93 (MQ=255)
ccATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAgg > 2:1807968/1‑93 (MQ=255)
ccATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAgg > 1:1088261/1‑93 (MQ=255)
cATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGt < 2:3765766/93‑1 (MQ=255)
cATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGt > 1:668739/1‑93 (MQ=255)
ttACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTg > 1:3933720/1‑93 (MQ=255)
ttACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTg > 2:7503344/1‑93 (MQ=255)
tACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGa > 1:926507/1‑93 (MQ=255)
tACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGa > 2:6893901/1‑93 (MQ=255)
gCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGCTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACctc < 1:3763634/93‑1 (MQ=255)
ccTTCATAGTCATCTCATTGTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACctcg > 1:2942909/1‑92 (MQ=255)
ccTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACctct < 2:1751067/93‑1 (MQ=255)
ccTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACctct > 2:5725361/1‑93 (MQ=255)
cTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTg > 1:7215196/1‑93 (MQ=255)
ttCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGc > 1:6613499/1‑93 (MQ=255)
ttCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGc < 2:1720600/93‑1 (MQ=255)
ttCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGc > 1:1286531/1‑93 (MQ=255)
tCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGcc > 1:5447605/1‑93 (MQ=255)
cATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGccc > 2:7667554/1‑93 (MQ=255)
cATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGccc > 2:2367750/1‑93 (MQ=255)
aTAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCg < 2:5034751/93‑1 (MQ=255)
tAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCgg > 1:5919086/1‑93 (MQ=255)
aGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGc < 2:8526358/93‑1 (MQ=255)
gTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCt < 2:8000639/93‑1 (MQ=255)
gTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCt < 1:2655122/93‑1 (MQ=255)
tCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCtt > 2:3750916/1‑93 (MQ=255)
cATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTc > 1:2741407/1‑93 (MQ=255)
aTCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGATCCTCTGCCCGGCTTcc < 1:1198509/93‑1 (MQ=255)
aTCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACGTCTGCCCGGCTTcc < 2:8268668/93‑1 (MQ=255)
aTCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTcc < 1:86708/93‑1 (MQ=255)
tctcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCa < 1:2363300/93‑1 (MQ=255)
ctcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAg > 2:8396368/1‑93 (MQ=255)
tcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAgg < 1:6383209/93‑1 (MQ=255)
tcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAgg > 1:6352338/1‑93 (MQ=255)
tcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAgg > 2:7143024/1‑93 (MQ=255)
tcATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAgg > 1:8245963/1‑93 (MQ=255)
tCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGgagc > 2:6378935/1‑92 (MQ=255)
tCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGgaga < 2:6806039/93‑1 (MQ=255)
tCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGgaga > 1:4400054/1‑93 (MQ=255)
cTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGAt < 2:5654771/93‑1 (MQ=255)
cTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGAt > 1:210869/1‑93 (MQ=255)
ggtggCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGc < 1:8715330/93‑1 (MQ=255)
ggCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTca > 2:6638129/1‑93 (MQ=255)
ggCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTca > 1:7810128/1‑93 (MQ=255)
gCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcat > 2:4258393/1‑93 (MQ=255)
gtatgtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattcc > 1:1816259/1‑93 (MQ=255)
gtatgtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattcc > 1:1477107/1‑93 (MQ=255)
tatgtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattcca > 1:3557942/1‑93 (MQ=255)
atgtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattccat < 1:2792/93‑1 (MQ=255)
tgtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattccatt < 1:1557966/93‑1 (MQ=255)
tgtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattccatt < 1:4211413/93‑1 (MQ=255)
gtaAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattccattc < 1:2331756/93‑1 (MQ=255)
gtaAGCTGGGTTTGCCGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTcattccattc > 2:8710012/1‑93 (MQ=255)
aGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCa > 2:8172904/1‑93 (MQ=255)
aGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCa < 1:5716203/93‑1 (MQ=255)
gCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAg > 2:3104603/1‑93 (MQ=255)
cTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAgg > 2:659410/1‑92 (MQ=255)
cTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGt < 1:6040642/93‑1 (MQ=255)
cTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGt > 1:7656501/1‑93 (MQ=255)
tGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTTCATTCGCAGTg > 2:2168112/1‑93 (MQ=255)
gggTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGc > 2:2119578/1‑93 (MQ=255)
ggTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGcc < 2:5118776/93‑1 (MQ=255)
tttGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGt < 2:4902842/93‑1 (MQ=255)
ttGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGtt < 1:974797/93‑1 (MQ=255)
gCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGt > 1:1383501/1‑93 (MQ=255)
gCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGt > 1:4012943/1‑93 (MQ=255)
gCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGt > 2:1101791/1‑93 (MQ=255)
ctctATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGtt > 2:4685148/1‑93 (MQ=255)
ctctATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGtt > 2:2617378/1‑93 (MQ=255)
tctATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTa > 1:492759/1‑93 (MQ=255)
ctATATAGAACCCATAACCAGTAGGGGGCAGGTTGACCCTCTGCCCGGCTGCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTaa < 1:6672120/93‑1 (MQ=255)
tatataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAAc > 1:6299532/1‑93 (MQ=255)
tatataGAACCCATAACCAGTAGGGGGCAGGCTGAACCTCTGCACGGCTTCCAGGGAGGTCCCGATTCCATTTGCACTGCGGCTGGCGGTAAc > 1:7112507/1‑93 (MQ=255)
tataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGc < 2:4194252/93‑1 (MQ=255)
tataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGc > 2:2768785/1‑93 (MQ=255)
tataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGc > 1:5488701/1‑93 (MQ=255)
tataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGc < 1:6844530/93‑1 (MQ=255)
ataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGcc > 1:2273762/1‑93 (MQ=255)
ataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGcc < 1:7757992/93‑1 (MQ=255)
ataGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGcc > 2:1365414/1‑93 (MQ=255)
aGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgt < 2:7391370/93‑1 (MQ=255)
aGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgt < 2:5874251/93‑1 (MQ=255)
gaccccATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgtt < 2:3515054/90‑1 (MQ=255)
gAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCGGGCTTCAAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTACGGCCgtg > 1:847706/1‑92 (MQ=255)
aaCCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgttg < 1:8212982/93‑1 (MQ=255)
aCCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCgttgt < 2:1381251/93‑1 (MQ=255)
ctcATAACCTGTAGGGTTCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGTAGCTCATTCCATTCGCAGTGCCGGTTGCGTCAACGCCggtgtt > 2:7843037/3‑93 (MQ=255)
cATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCt < 2:1593444/93‑1 (MQ=255)
ccAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTg < 1:5257145/93‑1 (MQ=255)
cAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGt > 1:7400517/1‑93 (MQ=255)
cAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGt > 1:3845249/1‑93 (MQ=255)
aGTAGGGGGCAGGTTGAGCCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTc < 2:4545476/93‑1 (MQ=255)
aGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTc < 2:4004304/93‑1 (MQ=255)
tAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCa < 2:458908/93‑1 (MQ=255)
aGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAg < 2:8138691/93‑1 (MQ=255)
ggggGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGt > 2:1038645/1‑93 (MQ=255)
ggggGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGt > 2:2828941/1‑93 (MQ=255)
ggggCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTa > 2:7722063/1‑93 (MQ=255)
ggggCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTa < 1:4121136/93‑1 (MQ=255)
|
GGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTA > NC_000913/1252625‑1252804
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACGT > NC_000913/1252622‑1252807
|
TGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGG > SRR4302541.6370015/1‑94 (MQ=60)
AGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCA < SRR4302541.8327357/94‑1 (MQ=60)
GGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCAGAACCAGTAGGGGGCAG > SRR4302541.7877623/1‑94 (MQ=60)
GCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGG > SRR4302541.1098433/1‑94 (MQ=60)
CCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGT > SRR4302541.5515046/1‑94 (MQ=60)
CCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGT > SRR4302541.675044/1‑94 (MQ=60)
CATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTT > SRR4302541.222363/1‑94 (MQ=60)
ATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTG > SRR4302541.3972896/1‑94 (MQ=60)
TTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGA > SRR4302541.935221/1‑94 (MQ=60)
TCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCT > SRR4302541.6747138/1‑94 (MQ=60)
CGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTC > SRR4302541.2570257/1‑94 (MQ=60)
GCCTTCATAGTCATCTCATTGTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCG > SRR4302541.2972505/1‑94 (MQ=60)
GCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCT > SRR4302541.6427408/1‑94 (MQ=60)
GCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGCTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCT < SRR4302541.3801434/94‑1 (MQ=60)
CCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTG > SRR4302541.6559830/1‑94 (MQ=60)
CCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTG < SRR4302541.4035229/94‑1 (MQ=60)
CCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTG > SRR4302541.7292172/1‑94 (MQ=60)
CTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGC > SRR4302541.1299267/1‑94 (MQ=60)
CTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGC > SRR4302541.6681279/1‑94 (MQ=60)
TTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCC > SRR4302541.5503499/1‑94 (MQ=60)
ATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGG > SRR4302541.5566171/1‑94 (MQ=60)
ATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGG > SRR4302541.5979350/1‑94 (MQ=60)
TAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGATCTATATAGAACCCATAACCAGTAGGGGTCAGGTTGAACCCCTGCCCGGC > SRR4302541.2086181/1‑94 (MQ=60)
AGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCT > SRR4302541.6069478/1‑94 (MQ=60)
AGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCT > SRR4302541.2792078/1‑94 (MQ=60)
AGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCT < SRR4302541.2902191/94‑1 (MQ=60)
GTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTT < SRR4302541.2681538/94‑1 (MQ=60)
GTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTT < SRR4302541.7785897/94‑1 (MQ=60)
GTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTT > SRR4302541.6765170/1‑94 (MQ=60)
TCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTC > SRR4302541.2768902/1‑94 (MQ=60)
ATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGATCCTCTGCCCGGCTTCCA < SRR4302541.1210133/94‑1 (MQ=60)
ATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCA < SRR4302541.87460/94‑1 (MQ=60)
TCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAG < SRR4302541.2386342/94‑1 (MQ=60)
CTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGG < SRR4302541.6400284/94‑1 (MQ=60)
CTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGG < SRR4302541.2236772/94‑1 (MQ=60)
CTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGG > SRR4302541.6417270/1‑94 (MQ=60)
CTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGG > SRR4302541.8335793/1‑94 (MQ=60)
CTCATTCTGGTGGCTGTATGTAAGCTGGGCTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGG > SRR4302541.8335792/1‑94 (MQ=60)
TCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGG < SRR4302541.6448399/94‑1 (MQ=60)
ATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAG > SRR4302541.6179501/1‑94 (MQ=60)
TTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGA > SRR4302541.4444065/1‑94 (MQ=60)
TCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGAT > SRR4302541.212479/1‑94 (MQ=60)
GGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCT < SRR4302541.8808551/94‑1 (MQ=60)
GTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTC > SRR4302541.241348/1‑94 (MQ=60)
TGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCA > SRR4302541.7648205/1‑94 (MQ=60)
TGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCA > SRR4302541.7894512/1‑94 (MQ=60)
GCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATT < SRR4302541.3945644/94‑1 (MQ=60)
TGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCC > SRR4302541.1491604/1‑94 (MQ=60)
TGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCC > SRR4302541.1833911/1‑94 (MQ=60)
TGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGCGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCC > SRR4302541.1491403/1‑94 (MQ=60)
GTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCA > SRR4302541.3593942/1‑94 (MQ=60)
ATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATT > SRR4302541.8785021/1‑94 (MQ=60)
ATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATT < SRR4302541.2822/94‑1 (MQ=60)
TGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGGTGCTCATTCCATTC > SRR4302541.4240232/1‑94 (MQ=60)
TGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTC < SRR4302541.4253304/94‑1 (MQ=60)
TGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTC < SRR4302541.4394527/94‑1 (MQ=60)
TGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTC < SRR4302541.1573574/94‑1 (MQ=60)
TGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTC < SRR4302541.2716699/94‑1 (MQ=60)
GTAAGCTGGGTTTGCGGCTCTATATAGAACCCATACCCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCG < SRR4302541.1489302/94‑1 (MQ=60)
GTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCG < SRR4302541.2354395/94‑1 (MQ=60)
TAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGC > SRR4302541.3846465/1‑94 (MQ=60)
AGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAG > SRR4302541.4839958/1‑94 (MQ=60)
AGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAG < SRR4302541.5774486/94‑1 (MQ=60)
GCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGT > SRR4302541.7738023/1‑94 (MQ=60)
CTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTG < SRR4302541.6102462/94‑1 (MQ=60)
GTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGT > SRR4302541.7331643/1‑94 (MQ=60)
TTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTT > SRR4302541.3038533/1‑94 (MQ=60)
TTGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTG < SRR4302541.983939/94‑1 (MQ=60)
TGCGGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGG < SRR4302541.8788442/94‑1 (MQ=60)
GGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGT > SRR4302541.1397077/1‑94 (MQ=60)
GGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGT > SRR4302541.8859858/1‑94 (MQ=60)
GGCTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGT > SRR4302541.4052631/1‑94 (MQ=60)
CTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTA > SRR4302541.1827003/1‑94 (MQ=60)
CTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTA > SRR4302541.497412/1‑94 (MQ=60)
CTCTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTA > SRR4302541.8648599/1‑94 (MQ=60)
CTATATAGAACCCATAACCAGTAGGGGGCAGGTTGACCCTCTGCCCGGCTGCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAAC < SRR4302541.6740793/94‑1 (MQ=60)
CTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAAC > SRR4302541.6363922/1‑94 (MQ=60)
CTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAAC < SRR4302541.3752947/94‑1 (MQ=60)
CTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAAC > SRR4302541.6492433/1‑94 (MQ=60)
CTATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAAC < SRR4302541.6740792/94‑1 (MQ=60)
CTATATAGAACCCATAACCAGTAGGGGGCAGGCTGAACCTCTGCACGGCTTCCAGGGAGgtcccgattccatttgcactgcggctggcggtaac > SRR4302541.7188261/1‑59 (MQ=60)
ATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGC > SRR4302541.5544951/1‑94 (MQ=60)
ATATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGC < SRR4302541.7074919/94‑1 (MQ=60)
TATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCC < SRR4302541.6917713/94‑1 (MQ=60)
TATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCC > SRR4302541.2295743/1‑94 (MQ=60)
TATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCC > SRR4302541.2295742/1‑94 (MQ=60)
TATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCC < SRR4302541.4118956/94‑1 (MQ=60)
ATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCG < SRR4302541.4321890/94‑1 (MQ=60)
ATAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCG < SRR4302541.7840528/94‑1 (MQ=60)
TAGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGT < SRR4302541.7938116/94‑1 (MQ=60)
AGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCGGGCTTCAAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAcggccgtg > SRR4302541.855412/1‑86 (MQ=60)
AGAACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTT > SRR4302541.3508941/1‑94 (MQ=60)
AACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGT > SRR4302541.760965/1‑94 (MQ=60)
AACCCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGT < SRR4302541.8302584/94‑1 (MQ=60)
CCATAACCAGTAGGGGTCAGGTTGATCCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTAGGCGTTAAAGCCGTTGTTCT < SRR4302541.7907338/94‑1 (MQ=60)
CCATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCT < SRR4302541.8393341/94‑1 (MQ=60)
CATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTG > SRR4302541.5998516/1‑94 (MQ=60)
CATAACCAGTAGGGGGCAGGGTGAACCTTTGCCAGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTAGCGTTGGCGCTAACGCCGTTGTTCTA > SRR4302541.1331165/1‑94 (MQ=60)
ATAACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGA > SRR4302541.7273215/1‑94 (MQ=60)
AACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACT < SRR4302541.5002719/94‑1 (MQ=60)
ACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTG < SRR4302541.1206023/94‑1 (MQ=60)
ACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTG < SRR4302541.2364362/94‑1 (MQ=60)
ACCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTG > SRR4302541.5334574/1‑94 (MQ=60)
CCAGTAGGGGGCAGGTTGAACCTCTGTCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGT < SRR4302541.1001060/94‑1 (MQ=60)
CCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGT > SRR4302541.5977973/1‑94 (MQ=60)
CCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGT < SRR4302541.5311315/94‑1 (MQ=60)
CCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGT > SRR4302541.7479670/1‑94 (MQ=60)
CCAGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGT > SRR4302541.3883967/1‑94 (MQ=60)
AGTAGGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCC > SRR4302541.1253654/1‑94 (MQ=60)
GGGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTA < SRR4302541.3959350/94‑1 (MQ=60)
GGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTAC < SRR4302541.6846525/94‑1 (MQ=60)
GGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTAC < SRR4302541.5356280/94‑1 (MQ=60)
GGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTAC < SRR4302541.4161837/94‑1 (MQ=60)
GGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTAC < SRR4302541.1542236/94‑1 (MQ=60)
GGGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGCTGTTCTGACTGTCCAGTAC > SRR4302541.7522395/1‑94 (MQ=60)
GGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACG < SRR4302541.3256011/94‑1 (MQ=60)
GGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACG > SRR4302541.3713820/1‑94 (MQ=60)
GGGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACG < SRR4302541.3505283/94‑1 (MQ=60)
GGGCAGGTTGAACCTCTGCCCGGCGTCCAGGGATATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACG < SRR4302541.3505282/94‑1 (MQ=60)
GGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACGT < SRR4302541.8748157/94‑1 (MQ=60)
GGCAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACGT < SRR4302541.7336290/94‑1 (MQ=60)
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TGAGGCCATTACTCGCCTTCATAGTCATCTCATTCTGGTGGCTGTATGTAAGCTGGGTTTGCGGCTCTATATAGAACCCATAACCAGTAGGGGACAGGTTGAACCTCTGCCCGGCTTCCAGGGAGATGCTCATTCCATTCGCAGTGCCGTTGGCGTTAACGCCGTTGTTCTGACTGTCCAGTACGT > NC_000913/1252622‑1252807
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
