Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,302,782	A→G	N2S (AAC→AGC)	oppD →	OppD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,302,782	0	A	G	100.0%	824.1 / NA	236	N2S (AAC→AGC)	oppD	OppD
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (125/111); total (125/111)

Only 100 of 238 total aligned reads displayed.

CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC  >  NC_000913/1302692‑1302871

cTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCg                                                                                         >  2:5919174/1‑93 (MQ=255)

cTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCg                                                                                         >  1:2659040/1‑93 (MQ=255)

cTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCg                                                                                         >  1:2183718/1‑93 (MQ=255)

 tCGTGGTGCCGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGt                                                                                        >  1:6307947/1‑93 (MQ=255)

 tCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCga                                                                                        >  1:5271418/1‑92 (MQ=255)

 tCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGt                                                                                        >  2:4973370/1‑93 (MQ=255)

   gtggtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTaa                                                                                      >  2:5389453/1‑93 (MQ=255)

    tggtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAAt                                                                                     >  2:560314/1‑93 (MQ=255)

    tggtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAAt                                                                                     <  2:4836383/93‑1 (MQ=255)

     ggtgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAAtt                                                                                    >  1:1849700/1‑93 (MQ=255)

        gACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGaa                                                                                 <  1:5502741/93‑1 (MQ=255)

         aCGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGaaa                                                                                <  1:5194497/93‑1 (MQ=255)

          cGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAc                                                                               >  2:6037893/1‑93 (MQ=255)

          cGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAc                                                                               >  2:2228539/1‑93 (MQ=255)

            cTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTg                                                                             <  1:5407498/93‑1 (MQ=255)

            cTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTg                                                                             >  2:4736440/1‑93 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGc                                                                            <  2:1581508/93‑1 (MQ=255)

              gttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCa                                                                           >  2:5519299/1‑93 (MQ=255)

                tttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAAc                                                                         <  1:102186/93‑1 (MQ=255)

                tttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAAc                                                                         <  1:3726498/93‑1 (MQ=255)

                   gtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACtgt                                                                      <  1:3963314/93‑1 (MQ=255)

                   gtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACtgt                                                                      <  1:4846763/93‑1 (MQ=255)

                   gtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACtgt                                                                      >  2:1178765/1‑93 (MQ=255)

                    tttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACtgtg                                                                     <  2:199421/93‑1 (MQ=255)

                     ttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGc                                                                    <  1:368986/93‑1 (MQ=255)

                      tCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGcc                                                                   <  2:5772752/93‑1 (MQ=255)

                      tCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGcc                                                                   >  2:2149074/1‑93 (MQ=255)

                         aCTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCt                                                                <  1:3360574/93‑1 (MQ=255)

                             tATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGca                                                            >  2:5839065/1‑93 (MQ=255)

                              aTCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGcac                                                           >  2:218360/1‑93 (MQ=255)

                              aTCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGcac                                                           >  1:481140/1‑93 (MQ=255)

                                cGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaa                                                         >  2:3605914/1‑93 (MQ=255)

                                cGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGGGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaa                                                         >  2:4128561/1‑93 (MQ=255)

                                  gCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaaca                                                       <  2:4938019/93‑1 (MQ=255)

                                   cGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaa                                                      <  2:2651342/93‑1 (MQ=255)

                                   cGATGGCTTGCGTGATGCCCTCGACCCGAAAGAACGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaa                                                      <  1:6430842/93‑1 (MQ=255)

                                    gATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaac                                                     <  2:74124/93‑1 (MQ=255)

                                    gATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaac                                                     >  2:4272388/1‑93 (MQ=255)

                                    gATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaac                                                     <  2:1402556/93‑1 (MQ=255)

                                    gATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaac                                                     >  1:4564786/1‑93 (MQ=255)

                                     aTGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaaca                                                    >  1:3859958/1‑93 (MQ=255)

                                      tGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAg                                                   <  1:3008501/93‑1 (MQ=255)

                                      tGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAg                                                   >  1:6251961/1‑93 (MQ=255)

                                       ggCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAgg                                                  >  2:269856/1‑93 (MQ=255)

                                       ggCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAgg                                                  >  1:1231481/1‑93 (MQ=255)

                                         cTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCt                                                <  2:4477521/93‑1 (MQ=255)

                                           tGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGa                                              >  1:2763175/1‑93 (MQ=255)

                                           tGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGa                                              >  1:2285568/1‑93 (MQ=255)

                                            gCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGAc                                             >  2:3956182/1‑93 (MQ=255)

                                             cGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACg                                            >  2:3656648/1‑93 (MQ=255)

                                              gTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGc                                           >  1:94737/1‑93 (MQ=255)

                                               tGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCa                                          >  1:6375707/1‑93 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         <  2:331521/93‑1 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         <  1:570870/93‑1 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         >  2:2493952/1‑93 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         <  1:5000110/93‑1 (MQ=255)

                                                 aTGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAct                                        >  1:2821351/1‑93 (MQ=255)

                                                   gCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgc                                      <  1:3374110/93‑1 (MQ=255)

                                                    cccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgct                                     >  2:563759/1‑93 (MQ=255)

                                                    cccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgct                                     <  1:1657491/93‑1 (MQ=255)

                                                    cccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgct                                     <  2:3112225/93‑1 (MQ=255)

                                                    cccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgct                                     <  1:6069188/93‑1 (MQ=255)

                                                    cccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgct                                     >  1:5987787/1‑93 (MQ=255)

                                                      cTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGa                                   >  1:1904730/1‑93 (MQ=255)

                                                       tCGACCGGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGaa                                  <  1:1811417/93‑1 (MQ=255)

                                                        cGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAAc                                 <  1:2963466/93‑1 (MQ=255)

                                                          aCCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGaaagg                               >  1:4920172/1‑90 (MQ=255)

                                                          aCCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGt                               >  1:314083/1‑93 (MQ=255)

                                                           cccGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTg                              >  1:1012908/1‑93 (MQ=255)

                                                           cccGAAAGAACGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTg                              >  2:3234115/1‑93 (MQ=255)

                                                            ccGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGa                             >  1:4037656/1‑93 (MQ=255)

                                                             cGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGaa                            >  1:2027235/1‑93 (MQ=255)

                                                               aaaGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAg                          >  2:6295346/1‑93 (MQ=255)

                                                                aaGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGa                         <  1:77943/93‑1 (MQ=255)

                                                                aaGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGa                         <  2:3892700/93‑1 (MQ=255)

                                                                 aGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAt                        <  2:5312291/93‑1 (MQ=255)

                                                                   aTCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAttt                      <  2:3005253/93‑1 (MQ=255)

                                                                   aTCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAttt                      <  1:3305980/93‑1 (MQ=255)

                                                                      gTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCg                   >  1:909291/1‑93 (MQ=255)

                                                                        tAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCgtg                 >  2:3735055/1‑93 (MQ=255)

                                                                        tAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCgtg                 <  2:5185574/93‑1 (MQ=255)

                                                                        tAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCgtg                 >  1:5907594/1‑93 (MQ=255)

                                                                         aaGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCgtgt                >  1:453325/1‑93 (MQ=255)

                                                                          aGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTc               >  1:4767038/1‑93 (MQ=255)

                                                                           ggAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCa              <  1:5360484/93‑1 (MQ=255)

                                                                           ggAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCa              >  1:1084672/1‑93 (MQ=255)

                                                                           ggAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCa              <  2:6005051/93‑1 (MQ=255)

                                                                             aGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCAcc            <  1:6457746/93‑1 (MQ=255)

                                                                              gTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCt           >  2:4081261/1‑93 (MQ=255)

                                                                              gTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCt           <  1:5243306/93‑1 (MQ=255)

                                                                              gTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCt           <  2:2559830/93‑1 (MQ=255)

                                                                              gTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCt           <  1:5389453/93‑1 (MQ=255)

                                                                               tGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCtt          <  2:3051431/93‑1 (MQ=255)

                                                                               tGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCtt          <  1:2590127/93‑1 (MQ=255)

                                                                                gCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCttt         >  1:2465985/1‑93 (MQ=255)

                                                                                  aGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAg       <  2:170348/93‑1 (MQ=255)

                                                                                  aGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAg       >  1:430170/1‑93 (MQ=255)

                                                                                     cATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAc    <  2:128580/93‑1 (MQ=255)

                                                                                       tGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAccc  <  1:4706852/93‑1 (MQ=255)

                                                                                       tGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAccc  >  1:4405020/1‑93 (MQ=255)

CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC  >  NC_000913/1302692‑1302871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  >  NC_000913/1302690‑1302874

TCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGC                                                                                             <  SRR4302534.3179267/94‑1 (MQ=60)

TCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGC                                                                                             <  SRR4302534.3752457/94‑1 (MQ=60)

 CCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCG                                                                                            >  SRR4302534.2729341/1‑94 (MQ=60)

 CCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCG                                                                                            >  SRR4302534.2241445/1‑94 (MQ=60)

 CCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCG                                                                                            <  SRR4302534.5976867/94‑1 (MQ=60)

  CTCGTGGTGCCGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGT                                                                                           >  SRR4302534.6478503/1‑94 (MQ=60)

  CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGT                                                                                           >  SRR4302534.2732808/1‑94 (MQ=60)

    CGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAA                                                                                         >  SRR4302534.6533977/1‑94 (MQ=60)

      TGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATT                                                                                       >  SRR4302534.1897824/1‑94 (MQ=60)

      TGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATT                                                                                       <  SRR4302534.3976152/94‑1 (MQ=60)

       GGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTG                                                                                      >  SRR4302534.1459520/1‑94 (MQ=60)

       GGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTG                                                                                      <  SRR4302534.3427579/94‑1 (MQ=60)

       GGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTG                                                                                      <  SRR4302534.5801532/94‑1 (MQ=60)

          GACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAA                                                                                   <  SRR4302534.5651150/94‑1 (MQ=60)

           ACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAC                                                                                  >  SRR4302534.5343159/1‑94 (MQ=60)

           ACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAC                                                                                  <  SRR4302534.5334571/94‑1 (MQ=60)

            TGCTGTTTTGTTTCATCTTTACCGGCGATGGATTGAGTGATTCCATCGGCCCGAAAGATCGTTAAGGAGTGCAGCAATGAGCGTAATTGAATCT                                                                                 <  SRR4302534.921054/94‑1 (MQ=44)

              CTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGC                                                                               >  SRR4302534.3952105/1‑94 (MQ=60)

              CTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGC                                                                               >  SRR4302534.765458/1‑94 (MQ=60)

              CTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGC                                                                               >  SRR4302534.1050367/1‑94 (MQ=60)

              CTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGC                                                                               <  SRR4302534.5552994/94‑1 (MQ=60)

                  TTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACT                                                                           <  SRR4302534.3826660/94‑1 (MQ=60)

                  TTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACT                                                                           <  SRR4302534.104916/94‑1 (MQ=60)

                     GTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTG                                                                        <  SRR4302534.4978259/94‑1 (MQ=60)

                     GTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTG                                                                        <  SRR4302534.4069427/94‑1 (MQ=60)

                     GTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTG                                                                        >  SRR4302534.2821282/1‑94 (MQ=60)

                     GTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTG                                                                        >  SRR4302534.5506602/1‑94 (MQ=60)

                       TTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCC                                                                      <  SRR4302534.378390/94‑1 (MQ=60)

                        TCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCG                                                                     <  SRR4302534.4574395/94‑1 (MQ=60)

                        TCAACTTTATCGGCGATGGCCTGCGTGATGCCCTCGACCCGAAAGATCGTTTAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCT                                                                     >  SRR4302534.6469171/1‑94 (MQ=60)

                           ACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACGCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTC                                                                  <  SRR4302534.3342937/94‑1 (MQ=60)

                           ACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTC                                                                  <  SRR4302534.5551469/94‑1 (MQ=60)

                           ACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTC                                                                  <  SRR4302534.3450583/94‑1 (MQ=60)

                            CTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCG                                                                 >  SRR4302534.4244216/1‑94 (MQ=60)

                            CTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCC                                                                 >  SRR4302534.4937240/1‑94 (MQ=60)

                            CTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGCGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCG                                                                 >  SRR4302534.4878535/1‑94 (MQ=60)

                               TATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCAC                                                              >  SRR4302534.493214/1‑94 (MQ=60)

                                ATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACA                                                             >  SRR4302534.1953548/1‑94 (MQ=60)

                                   GGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACA                                                          >  SRR4302534.5471192/1‑94 (MQ=60)

                                   GGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACA                                                          <  SRR4302534.5093697/94‑1 (MQ=60)

                                     CGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAAC                                                        >  SRR4302534.5333189/1‑94 (MQ=60)

                                     CGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAAC                                                        >  SRR4302534.4688545/1‑94 (MQ=60)

                                     CGATGGCTTGCGTGATGCCCTCGACCCGAAAGAACGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAAC                                                        <  SRR4302534.6604218/94‑1 (MQ=60)

                                      GATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACA                                                       >  SRR4302534.3963593/1‑94 (MQ=60)

                                      GATGGCTTGCGTGACGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACA                                                       >  SRR4302534.6527448/1‑94 (MQ=60)

                                       ATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACCACAACAG                                                      >  SRR4302534.662084/1‑94 (MQ=60)

                                       ATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAG                                                      >  SRR4302534.6421460/1‑94 (MQ=60)

                                       ATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAG                                                      >  SRR4302534.3829654/1‑94 (MQ=60)

                                       ATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAG                                                      <  SRR4302534.5880625/94‑1 (MQ=60)

                                       ATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAG                                                      <  SRR4302534.1880551/94‑1 (MQ=60)

                                       ATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAG                                                      <  SRR4302534.5169845/94‑1 (MQ=60)

                                       ATGACTTGCGTGATTCCATCGCCCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAACCTGCAACTGTGCCGCTCGCAAAACAACAG                                                      <  SRR4302534.3104021/94‑1 (MQ=60)

                                        TGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGG                                                     >  SRR4302534.4848419/1‑94 (MQ=60)

                                        TGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGG                                                     <  SRR4302534.3087217/94‑1 (MQ=60)

                                        TGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGG                                                     >  SRR4302534.1263904/1‑94 (MQ=60)

                                         GGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGC                                                    >  SRR4302534.5389179/1‑94 (MQ=60)

                                         GGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGC                                                    >  SRR4302534.445565/1‑94 (MQ=60)

                                         GGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGC                                                    <  SRR4302534.4979710/94‑1 (MQ=60)

                                         GGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGC                                                    >  SRR4302534.4387889/1‑94 (MQ=60)

                                          GCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCT                                                   <  SRR4302534.6375492/94‑1 (MQ=60)

                                            TTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGA                                                 >  SRR4302534.2346222/1‑94 (MQ=60)

                                            TTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGA                                                 >  SRR4302534.2835939/1‑94 (MQ=60)

                                            TTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGA                                                 <  SRR4302534.6624694/94‑1 (MQ=60)

                                               CGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGC                                              >  SRR4302534.97267/1‑94 (MQ=60)

                                               CGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGC                                              >  SRR4302534.456762/1‑94 (MQ=60)

                                                GTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCA                                             >  SRR4302534.6547907/1‑94 (MQ=60)

                                                  GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           <  SRR4302534.96421/94‑1 (MQ=60)

                                                  GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           <  SRR4302534.5135297/94‑1 (MQ=60)

                                                  GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           <  SRR4302534.326734/94‑1 (MQ=60)

                                                  GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           >  SRR4302534.2895529/1‑94 (MQ=60)

                                                  GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           <  SRR4302534.584870/94‑1 (MQ=60)

                                                   ATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTG                                          <  SRR4302534.2043683/94‑1 (MQ=60)

                                                     GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGTACAACAACAGGCTGACGCACTGCT                                        <  SRR4302534.4124390/94‑1 (MQ=60)

                                                     GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        >  SRR4302534.3083867/1‑94 (MQ=60)

                                                     GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        <  SRR4302534.4974305/94‑1 (MQ=60)

                                                     GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        <  SRR4302534.3464530/94‑1 (MQ=60)

                                                     GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        >  SRR4302534.5427222/1‑94 (MQ=60)

                                                     GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        >  SRR4302534.6150440/1‑94 (MQ=60)

                                                      CCNTNGNNNNNNAAGATCGTTNANNNNNNNAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGNCTGACNCNCTGCTG                                       <  SRR4302534.4839833/94‑1 (MQ=60)

                                                      CCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTG                                       <  SRR4302534.6234190/94‑1 (MQ=60)

                                                      CCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTG                                       <  SRR4302534.1700678/94‑1 (MQ=60)

                                                       CCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGA                                      >  SRR4302534.1954422/1‑94 (MQ=60)

                                                         TCGACCGGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAAC                                    <  SRR4302534.1858462/94‑1 (MQ=60)

                                                          CGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACG                                   <  SRR4302534.4658412/94‑1 (MQ=60)

                                                          CGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACG                                   >  SRR4302534.1233820/1‑94 (MQ=60)

                                                          CGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACG                                   <  SRR4302534.3041084/94‑1 (MQ=60)

                                                           GACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAAagg                                  >  SRR4302534.5053521/1‑91 (MQ=60)

                                                           GACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGT                                  >  SRR4302534.322178/1‑94 (MQ=60)

                                                           GACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGC                                  >  SRR4302534.1045112/1‑94 (MQ=60)

                                                            ACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTG                                 >  SRR4302534.1038969/1‑94 (MQ=60)

                                                             CCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGA                                >  SRR4302534.4145913/1‑94 (MQ=60)

                                                              CCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAA                               >  SRR4302534.2080260/1‑94 (MQ=60)

                                                              CCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAA                               >  SRR4302534.920958/1‑94 (MQ=60)

                                                              CCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAA                               >  SRR4302534.2506572/1‑94 (MQ=60)

                                                               CGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAA                              >  SRR4302534.3001553/1‑94 (MQ=60)

                                                                GAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAG                             >  SRR4302534.222653/1‑94 (MQ=60)

                                                                GAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAG                             <  SRR4302534.2507497/94‑1 (MQ=60)

                                                                 AAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGA                            >  SRR4302534.4732518/1‑94 (MQ=60)

                                                                  AAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAT                           <  SRR4302534.2707499/94‑1 (MQ=60)

                                                                  AAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAT                           <  SRR4302534.80051/94‑1 (MQ=60)

                                                                    GATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTT                         <  SRR4302534.344825/94‑1 (MQ=60)

                                                                     ATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTG                        <  SRR4302534.3394252/94‑1 (MQ=60)

                                                                      TCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGC                       >  SRR4302534.1891642/1‑94 (MQ=60)

                                                                       CGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCG                      >  SRR4302534.932405/1‑94 (MQ=60)

                                                                        GTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGT                     >  SRR4302534.5558978/1‑94 (MQ=60)

                                                                         TTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTG                    <  SRR4302534.6568207/94‑1 (MQ=60)

                                                                         TTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTG                    >  SRR4302534.3495262/1‑94 (MQ=60)

                                                                         TTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTG                    >  SRR4302534.6068006/1‑94 (MQ=60)

                                                                          TAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGT                   >  SRR4302534.464808/1‑94 (MQ=60)

                                                                          TAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGT                   <  SRR4302534.3007534/94‑1 (MQ=60)

                                                                           AAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTC                  <  SRR4302534.1163931/94‑1 (MQ=60)

                                                                           AAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTC                  >  SRR4302534.4896479/1‑94 (MQ=60)

                                                                            AGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCA                 >  SRR4302534.1112873/1‑94 (MQ=60)

                                                                             GGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCAC                <  SRR4302534.5504968/94‑1 (MQ=60)

                                                                              GTGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACC               >  SRR4302534.4743306/1‑94 (MQ=60)

                                                                              GAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACC               >  SRR4302534.6216612/1‑94 (MQ=60)

                                                                              GAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACC               <  SRR4302534.2566638/94‑1 (MQ=60)

                                                                               AGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACACCAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCT              >  SRR4302534.2060131/1‑94 (MQ=60)

                                                                               AGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCT              <  SRR4302534.3810413/94‑1 (MQ=60)

                                                                               AGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCC              <  SRR4302534.6631718/94‑1 (MQ=60)

                                                                                GTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTT             <  SRR4302534.5534599/94‑1 (MQ=60)

                                                                                GTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTT             <  SRR4302534.5384916/94‑1 (MQ=60)

                                                                                GTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTT             <  SRR4302534.6111562/94‑1 (MQ=60)

                                                                                 TGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTT            <  SRR4302534.2658696/94‑1 (MQ=60)

                                                                                 TGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTT            >  SRR4302534.2531539/1‑94 (MQ=60)

                                                                                  GCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTA           <  SRR4302534.3651205/94‑1 (MQ=60)

                                                                                  GCAGCCATGAGCGTAATTGAAACTGCAACTGTGCAGCTCGCACAACAACAGGCTGACGCGCTGCTGAACGTGAAAGATTTGCGTGTCACCTTTA           <  SRR4302534.6256779/94‑1 (MQ=60)

                                                                                   CAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAG          >  SRR4302534.441148/1‑94 (MQ=60)

                                                                                    AGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGT         >  SRR4302534.5612808/1‑94 (MQ=60)

                                                                                     GCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTA        <  SRR4302534.1744615/94‑1 (MQ=60)

                                                                                      CCATGAGCGTAATTGACACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAC       <  SRR4302534.6001341/94‑1 (MQ=60)

                                                                                      CCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAC       >  SRR4302534.2857367/1‑94 (MQ=60)

                                                                                      CCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAC       >  SRR4302534.5008723/1‑94 (MQ=60)

                                                                                        ATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC     >  SRR4302534.4523891/1‑94 (MQ=60)

                                                                                        ATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC     <  SRR4302534.2315873/94‑1 (MQ=60)

                                                                                         TGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCC    <  SRR4302534.4834635/94‑1 (MQ=60)

                                                                                           AGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  >  SRR4302534.3304701/1‑94 (MQ=60)

TCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  >  NC_000913/1302690‑1302874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`