Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I1 R1	744	338.8	17650688	97.8%	17262372	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,302,782	A→G	N2S (AAC→AGC)	oppD →	OppD

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,302,782	0	A	G	100.0%	1002.8 / NA	288	N2S (AAC→AGC)	oppD	OppD
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (165/123); total (165/123)

Only 100 of 295 total aligned reads displayed.

CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC  >  NC_000913/1302692‑1302871

       tgACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGa                                                                                  >  1:564630/1‑93 (MQ=255)

        gACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGaa                                                                                 >  2:8509670/1‑93 (MQ=255)

        gACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGaa                                                                                 >  2:5850667/1‑93 (MQ=255)

          cGCTGTTTTGTCTCAACTTTATCGGAGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAc                                                                               <  1:8755872/93‑1 (MQ=255)

            cTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTg                                                                             >  2:3734038/1‑93 (MQ=255)

            cTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTg                                                                             >  2:6459202/1‑93 (MQ=255)

            cTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTg                                                                             >  2:2702531/1‑93 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGc                                                                            >  2:3394382/1‑93 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGc                                                                            >  1:2986911/1‑93 (MQ=255)

             tgttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGc                                                                            <  1:5450538/93‑1 (MQ=255)

              gttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCa                                                                           >  2:2054372/1‑93 (MQ=255)

              gttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCa                                                                           >  1:4667658/1‑93 (MQ=255)

               ttttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCaa                                                                          >  1:3894394/1‑93 (MQ=255)

                tttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAAc                                                                         >  2:3669184/1‑93 (MQ=255)

                tttgtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAAc                                                                         <  2:2786624/93‑1 (MQ=255)

                  tgttgCAACTTTATAGGCGATGGCTTGCGTGAGGCCCTCGACCCGAAAGATCGTTAAGTAGTGCAGCCATGAGCGTAATTGAAACTGCAACtg                                                                       <  2:6402152/93‑1 (MQ=255)

                   ttttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACtgt                                                                      <  1:4520340/92‑1 (MQ=255)

                   gtttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTCCAACtgt                                                                      >  2:6528579/1‑93 (MQ=255)

                     ttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGc                                                                    >  1:117201/1‑93 (MQ=255)

                     ttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGc                                                                    <  1:4248239/93‑1 (MQ=255)

                     ttCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGc                                                                    >  2:68027/1‑93 (MQ=255)

                       cAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCg                                                                  >  2:7445479/1‑93 (MQ=255)

                         aCTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCt                                                                >  1:4374244/1‑93 (MQ=255)

                          cTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTc                                                               <  1:1950744/93‑1 (MQ=255)

                          cTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTc                                                               <  1:4899551/93‑1 (MQ=255)

                           tttATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCg                                                              >  2:2390814/1‑93 (MQ=255)

                             tATCGGCGATGGATTAAGTAATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTAAAACTGTGCCGCTCGca                                                            <  2:7837852/93‑1 (MQ=255)

                              aTCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGACGCTCGcac                                                           >  1:3346353/1‑93 (MQ=255)

                               tCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGcaca                                                          >  2:3542419/1‑93 (MQ=255)

                                  gCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaaca                                                       >  1:2839158/1‑93 (MQ=255)

                                    gATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaac                                                     >  2:5785386/1‑93 (MQ=255)

                                    gATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaac                                                     >  1:7931069/1‑93 (MQ=255)

                                    gATGGCTTCCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaac                                                     <  2:4248725/93‑1 (MQ=255)

                                     aTGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaaca                                                    >  1:3761200/1‑93 (MQ=255)

                                     aTGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaaca                                                    <  1:3793491/93‑1 (MQ=255)

                                     aTGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCacaacaaca                                                    <  2:5687864/93‑1 (MQ=255)

                                        gCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGc                                                 <  1:2474528/93‑1 (MQ=255)

                                        gCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGc                                                 <  1:3562278/93‑1 (MQ=255)

                                        gCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGc                                                 >  1:8223962/1‑93 (MQ=255)

                                         cTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCt                                                >  1:5948378/1‑93 (MQ=255)

                                         cTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCt                                                >  1:5039844/1‑93 (MQ=255)

                                           tGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGa                                              >  2:5079848/1‑93 (MQ=255)

                                             cGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACg                                            >  1:7691866/1‑93 (MQ=255)

                                             cGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACg                                            <  1:5143302/93‑1 (MQ=255)

                                              gTGATGCCCTTGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGc                                           >  2:5214176/1‑93 (MQ=255)

                                              gTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGCCGc                                           >  2:4402421/1‑93 (MQ=255)

                                              gTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGc                                           >  2:1524960/1‑93 (MQ=255)

                                                gATGCCCTCGACCGGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         <  2:8594475/93‑1 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         <  1:4000200/93‑1 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         >  2:7743524/1‑93 (MQ=255)

                                                gATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAc                                         <  2:7056229/93‑1 (MQ=255)

                                                 aTGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAct                                        >  1:526831/1‑93 (MQ=255)

                                                 aTGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAct                                        <  1:7291284/93‑1 (MQ=255)

                                                 aTGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAct                                        >  1:7787398/1‑93 (MQ=255)

                                                 aTGCCCTCGACCCGAAAGATCGTTAAGGAGCGCAGCCATGAGCGTACTTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTCAAGCAct                                        >  2:2984399/1‑93 (MQ=255)

                                                    cccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgct                                     >  1:5407116/1‑93 (MQ=255)

                                                    cccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgct                                     >  1:2241166/1‑93 (MQ=255)

                                                     ccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgctg                                    >  2:2480223/1‑93 (MQ=255)

                                                     ccTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCActgctg                                    >  1:3161809/1‑93 (MQ=255)

                                                      cTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGa                                   <  1:6281964/93‑1 (MQ=255)

                                                       tCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGaa                                  <  2:7095977/93‑1 (MQ=255)

                                                       tCGACCCGAAAGATCGTTAAGGAGCGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGac                                  >  1:896260/1‑92 (MQ=255)

                                                        cGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCCCTGCTGAAc                                 <  1:1230909/93‑1 (MQ=255)

                                                        cGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAAc                                 <  2:4499179/93‑1 (MQ=255)

                                                         gACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACg                                >  1:211666/1‑93 (MQ=255)

                                                         gACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACg                                >  2:3110068/1‑93 (MQ=255)

                                                          aCCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGt                               <  2:1222945/93‑1 (MQ=255)

                                                                aaGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGa                         <  1:8624943/93‑1 (MQ=255)

                                                                aaGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGa                         >  2:1931326/1‑93 (MQ=255)

                                                                aaGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGa                         <  1:4822191/93‑1 (MQ=255)

                                                                aaGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGa                         >  2:4649348/1‑93 (MQ=255)

                                                                  gATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAtt                       <  2:914306/93‑1 (MQ=255)

                                                                  gATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAtt                       <  2:2268420/93‑1 (MQ=255)

                                                                   aTCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAttt                      <  1:1432400/93‑1 (MQ=255)

                                                                    tCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTg                     >  2:161262/1‑93 (MQ=255)

                                                                    tCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTg                     >  2:7718046/1‑93 (MQ=255)

                                                                       ttAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCgt                  >  1:8369572/1‑93 (MQ=255)

                                                                       ttAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCgt                  >  1:6047357/1‑93 (MQ=255)

                                                                          aGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTc               >  2:6031674/1‑93 (MQ=255)

                                                                           ggAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCa              >  1:6539884/1‑93 (MQ=255)

                                                                            gAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCAc             >  1:5705040/1‑93 (MQ=255)

                                                                            gAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCAc             >  2:4070714/1‑93 (MQ=255)

                                                                             aGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCAcc            <  2:5254704/93‑1 (MQ=255)

                                                                              gTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCt           <  1:2328668/93‑1 (MQ=255)

                                                                               tGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCtt          <  2:7285557/93‑1 (MQ=255)

                                                                                 cAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTa        >  1:4197389/1‑93 (MQ=255)

                                                                                 cAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTa        <  1:3448055/93‑1 (MQ=255)

                                                                                  aGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCCCCTTTAg       <  2:7137781/93‑1 (MQ=255)

                                                                                  aGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAg       <  2:5634830/93‑1 (MQ=255)

                                                                                  aGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAg       <  1:8705890/93‑1 (MQ=255)

                                                                                   gCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGt      >  2:3342378/1‑93 (MQ=255)

                                                                                   gCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGt      <  2:8151157/93‑1 (MQ=255)

                                                                                   gCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGt      <  1:7026668/93‑1 (MQ=255)

                                                                                    ccATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTa     <  1:1063675/93‑1 (MQ=255)

                                                                                     cATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAc    >  2:7564133/1‑93 (MQ=255)

                                                                                     cATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAc    >  1:3033256/1‑93 (MQ=255)

                                                                                     cATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAc    >  2:3929285/1‑93 (MQ=255)

                                                                                     cATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCAACTTTAGtgc    >  2:4597906/1‑91 (MQ=255)

                                                                                       tGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAccc  >  2:3169735/1‑93 (MQ=255)

                                                                                       tGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAccc  >  2:1715526/1‑93 (MQ=255)

CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCC  >  NC_000913/1302692‑1302871

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  >  NC_000913/1302689‑1302874

TTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAG                                                                                              <  SRR4302541.8148576/94‑1 (MQ=60)

 TCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGC                                                                                             >  SRR4302541.7044899/1‑94 (MQ=60)

   CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGT                                                                                           <  SRR4302541.4609930/94‑1 (MQ=60)

   CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGT                                                                                           <  SRR4302541.4626203/94‑1 (MQ=60)

   CTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGT                                                                                           >  SRR4302541.4752508/1‑94 (MQ=60)

      GTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAAT                                                                                        >  SRR4302541.4003363/1‑94 (MQ=60)

        GGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTG                                                                                      <  SRR4302541.8335182/94‑1 (MQ=60)

         GTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGA                                                                                     >  SRR4302541.569932/1‑94 (MQ=60)

         GTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGA                                                                                     <  SRR4302541.3349110/94‑1 (MQ=60)

          TGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAA                                                                                    <  SRR4302541.4370522/94‑1 (MQ=60)

            ACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAC                                                                                  >  SRR4302541.2337294/1‑94 (MQ=60)

             CGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACT                                                                                 <  SRR4302541.6906110/94‑1 (MQ=60)

             CGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACT                                                                                 >  SRR4302541.5191973/1‑94 (MQ=60)

             CGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAAAT                                                                                 >  SRR4302541.3507174/1‑94 (MQ=60)

             CGCTGTTTTGTCTCAACTTTATCGGAGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACT                                                                                 <  SRR4302541.8849535/94‑1 (MQ=60)

              GCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTG                                                                                <  SRR4302541.2616836/94‑1 (MQ=60)

              GCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTG                                                                                >  SRR4302541.4550551/1‑94 (MQ=60)

               CTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGC                                                                               >  SRR4302541.3017052/1‑94 (MQ=60)

                TGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCA                                                                              <  SRR4302541.5506466/94‑1 (MQ=60)

                TGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCA                                                                              >  SRR4302541.6087404/1‑94 (MQ=60)

                TGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCA                                                                              >  SRR4302541.4715198/1‑94 (MQ=60)

                 GTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAA                                                                             >  SRR4302541.3678223/1‑94 (MQ=60)

                 GTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAA                                                                             >  SRR4302541.4555569/1‑94 (MQ=60)

                 GTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAA                                                                             >  SRR4302541.3933404/1‑94 (MQ=60)

                 GTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAA                                                                             >  SRR4302541.1218818/1‑94 (MQ=60)

                 GTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAA                                                                             >  SRR4302541.3184597/1‑94 (MQ=60)

                   TTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACT                                                                           >  SRR4302541.4949295/1‑94 (MQ=60)

                   TTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACT                                                                           <  SRR4302541.493706/94‑1 (MQ=60)

                     TGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGT                                                                         >  SRR4302541.4226001/1‑94 (MQ=60)

                     TGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGT                                                                         >  SRR4302541.8333539/1‑94 (MQ=60)

                     TGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGT                                                                         <  SRR4302541.8895916/94‑1 (MQ=60)

                      TTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTG                                                                        <  SRR4302541.4565961/94‑1 (MQ=60)

                      GTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTG                                                                        <  SRR4302541.1493527/94‑1 (MQ=60)

                       TTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGC                                                                       <  SRR4302541.1227172/94‑1 (MQ=60)

                       TTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGC                                                                       >  SRR4302541.118144/1‑94 (MQ=60)

                        TTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCC                                                                      <  SRR4302541.50398/94‑1 (MQ=60)

                        TTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCC                                                                      <  SRR4302541.4290682/94‑1 (MQ=60)

                        TTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCC                                                                      <  SRR4302541.8651528/94‑1 (MQ=60)

                           AACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCT                                                                   >  SRR4302541.3373344/1‑94 (MQ=60)

                           AACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCT                                                                   <  SRR4302541.6116238/94‑1 (MQ=60)

                           AACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCT                                                                   >  SRR4302541.4417950/1‑94 (MQ=60)

                            ACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTGATTGAAACTGCAACTGTGCCGCTC                                                                  <  SRR4302541.2556772/94‑1 (MQ=60)

                            ACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTC                                                                  >  SRR4302541.4390956/1‑94 (MQ=60)

                             ctttgtggggtattGCTTGTGTGATGCCCTCGAGCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAGACTGCAACTGTGCCGCTCG                                                                 <  SRR4302541.8230006/80‑1 (MQ=60)

                             CTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCG                                                                 <  SRR4302541.4949544/94‑1 (MQ=60)

                             CTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCG                                                                 <  SRR4302541.1969546/94‑1 (MQ=60)

                             CTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCG                                                                 <  SRR4302541.7865660/94‑1 (MQ=60)

                             CTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCG                                                                 <  SRR4302541.4237079/94‑1 (MQ=60)

                              TTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGC                                                                <  SRR4302541.1313707/94‑1 (MQ=60)

                              TTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGC                                                                <  SRR4302541.5319383/94‑1 (MQ=60)

                                TATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGACGCTCGCAC                                                              >  SRR4302541.3379802/1‑94 (MQ=60)

                                 ATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAACCTGCAACTGTGCCGCTCGCACA                                                             >  SRR4302541.5354282/1‑94 (MQ=60)

                                  TCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAA                                                            >  SRR4302541.8904660/1‑94 (MQ=60)

                                    GGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACA                                                          >  SRR4302541.2867717/1‑94 (MQ=60)

                                    GGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACA                                                          <  SRR4302541.3021674/94‑1 (MQ=60)

                                      CGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAAC                                                        >  SRR4302541.8018414/1‑94 (MQ=60)

                                      CGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAAC                                                        <  SRR4302541.3038803/94‑1 (MQ=60)

                                      CGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAAC                                                        >  SRR4302541.8117910/1‑94 (MQ=60)

                                       GATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACA                                                       <  SRR4302541.8470803/94‑1 (MQ=60)

                                       GATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACA                                                       >  SRR4302541.2256471/1‑94 (MQ=60)

                                       GATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACA                                                       >  SRR4302541.3798985/1‑94 (MQ=60)

                                        ATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAG                                                      <  SRR4302541.3831649/94‑1 (MQ=60)

                                        ATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGGAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAG                                                      >  SRR4302541.2245845/1‑94 (MQ=60)

                                          GGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGC                                                    <  SRR4302541.6104928/94‑1 (MQ=60)

                                          GGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGC                                                    >  SRR4302541.8313643/1‑94 (MQ=60)

                                           GCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCT                                                   <  SRR4302541.2499310/94‑1 (MQ=60)

                                           GCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCT                                                   >  SRR4302541.6008990/1‑94 (MQ=60)

                                           GCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCT                                                   <  SRR4302541.3598334/94‑1 (MQ=60)

                                           GCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCT                                                   >  SRR4302541.5091704/1‑94 (MQ=60)

                                            CTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGGAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTgccccaacaacagcatg                                                  >  SRR4302541.1644618/1‑77 (MQ=60)

                                             TTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGA                                                 >  SRR4302541.2338311/1‑94 (MQ=60)

                                             TTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGA                                                 >  SRR4302541.5742029/1‑94 (MQ=60)

                                             TTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGA                                                 >  SRR4302541.8845483/1‑94 (MQ=60)

                                             TTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGA                                                 >  SRR4302541.5779478/1‑94 (MQ=60)

                                              TGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGAC                                                <  SRR4302541.2944329/94‑1 (MQ=60)

                                               GCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACG                                               <  SRR4302541.2039253/94‑1 (MQ=60)

                                               GCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACG                                               >  SRR4302541.7773661/1‑94 (MQ=60)

                                               GCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAAATGTGCCGCTCGCACAACAACAGGCTGAGG                                               >  SRR4302541.1317306/1‑94 (MQ=60)

                                                CGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGC                                              >  SRR4302541.3552146/1‑94 (MQ=60)

                                                CGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGC                                              >  SRR4302541.5387758/1‑94 (MQ=60)

                                                CGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGC                                              <  SRR4302541.5196202/94‑1 (MQ=60)

                                                 GTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCA                                             <  SRR4302541.5476097/94‑1 (MQ=60)

                                                 GTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCA                                             <  SRR4302541.5466420/94‑1 (MQ=60)

                                                  TGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAC                                            >  SRR4302541.6554955/1‑94 (MQ=60)

                                                  TGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCAC                                            >  SRR4302541.4012303/1‑94 (MQ=60)

                                                   GTTGCGCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           <  SRR4302541.5004854/94‑1 (MQ=60)

                                                   GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAACCTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           >  SRR4302541.6116047/1‑94 (MQ=60)

                                                   GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           >  SRR4302541.531765/1‑94 (MQ=60)

                                                   GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           >  SRR4302541.7870584/1‑94 (MQ=60)

                                                   GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           <  SRR4302541.3755623/94‑1 (MQ=60)

                                                   GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           <  SRR4302541.3923275/94‑1 (MQ=60)

                                                   GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           <  SRR4302541.4039798/94‑1 (MQ=60)

                                                   GATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACT                                           >  SRR4302541.2471761/1‑94 (MQ=60)

                                                    ATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTG                                          <  SRR4302541.7369112/94‑1 (MQ=60)

                                                    ATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTG                                          >  SRR4302541.2459735/1‑94 (MQ=60)

                                                      GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        >  SRR4302541.5462588/1‑94 (MQ=60)

                                                      GCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCT                                        >  SRR4302541.2262867/1‑94 (MQ=60)

                                                       CCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTG                                       <  SRR4302541.1119565/94‑1 (MQ=60)

                                                       CCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTG                                       >  SRR4302541.3193738/1‑94 (MQ=60)

                                                         CTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAA                                     <  SRR4302541.5541895/94‑1 (MQ=60)

                                                         CTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAA                                     <  SRR4302541.6346135/94‑1 (MQ=60)

                                                         CTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAA                                     >  SRR4302541.6002399/1‑94 (MQ=60)

                                                         CTCGACCCGAAAGATCGTTAAGGAGCGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAC                                     >  SRR4302541.904521/1‑94 (MQ=60)

                                                           CGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCCCTGCTGAACG                                   <  SRR4302541.1243015/94‑1 (MQ=60)

                                                           CGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACG                                   >  SRR4302541.213282/1‑94 (MQ=60)

                                                           CGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACG                                   >  SRR4302541.8766564/1‑94 (MQ=60)

                                                            GACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGT                                  >  SRR4302541.8163991/1‑94 (MQ=60)

                                                             ACCCGAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTG                                 <  SRR4302541.4262031/94‑1 (MQ=60)

                                                                 GAAAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAG                             >  SRR4302541.341615/1‑94 (MQ=60)

                                                                 CAAAGATCGGTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAG                             <  SRR4302541.4863124/94‑1 (MQ=60)

                                                                   AAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAT                           <  SRR4302541.8717392/94‑1 (MQ=60)

                                                                   AAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAT                           <  SRR4302541.8717391/94‑1 (MQ=60)

                                                                   AAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAT                           <  SRR4302541.4871345/94‑1 (MQ=60)

                                                                   AAGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGAT                           <  SRR4302541.7314211/94‑1 (MQ=60)

                                                                    AGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATT                          <  SRR4302541.5712618/94‑1 (MQ=60)

                                                                    AGATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATT                          >  SRR4302541.5103252/1‑94 (MQ=60)

                                                                      ATCGTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTG                        <  SRR4302541.1446329/94‑1 (MQ=60)

                                                                         GTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGT                     >  SRR4302541.6109207/1‑94 (MQ=60)

                                                                         GTTAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGT                     >  SRR4302541.8460298/1‑94 (MQ=60)

                                                                           TAAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGT                   <  SRR4302541.20526/94‑1 (MQ=60)

                                                                            AAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAAGTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTC                  >  SRR4302541.7570349/1‑94 (MQ=60)

                                                                            AAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTC                  >  SRR4302541.7696022/1‑94 (MQ=60)

                                                                            AAGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTC                  >  SRR4302541.3147074/1‑94 (MQ=60)

                                                                             AGGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCA                 >  SRR4302541.6606669/1‑94 (MQ=60)

                                                                              GGAGTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCAC                >  SRR4302541.5763208/1‑94 (MQ=60)

                                                                                 GTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTT             <  SRR4302541.2351267/94‑1 (MQ=60)

                                                                                 GTGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTT             <  SRR4302541.3416590/94‑1 (MQ=60)

                                                                                  TGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTT            >  SRR4302541.5510306/1‑94 (MQ=60)

                                                                                  CGCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTT            <  SRR4302541.6673804/94‑1 (MQ=60)

                                                                                   GCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTA           >  SRR4302541.4239082/1‑94 (MQ=60)

                                                                                   GCAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTA           <  SRR4302541.8801002/94‑1 (MQ=60)

                                                                                    CAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAG          <  SRR4302541.3482506/94‑1 (MQ=60)

                                                                                    CAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAG          <  SRR4302541.7351125/94‑1 (MQ=60)

                                                                                    CAGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGGGAAAGATTTGCGTGTCACCTTTAG          >  SRR4302541.7875398/1‑94 (MQ=60)

                                                                                     AGCGATGAGCGTAATTGAAACTGCAACTGTGGCGCTCGCTCAACAAGAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGT         <  SRR4302541.3810885/94‑1 (MQ=60)

                                                                                     AGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGT         <  SRR4302541.8799034/94‑1 (MQ=60)

                                                                                     AGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGT         >  SRR4302541.2924974/1‑94 (MQ=60)

                                                                                     AGCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGT         <  SRR4302541.3810886/94‑1 (MQ=60)

                                                                                      GCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTA        <  SRR4302541.7101372/94‑1 (MQ=60)

                                                                                      GCCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTA        >  SRR4302541.3931288/1‑94 (MQ=60)

                                                                                       CCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAC       <  SRR4302541.1073562/94‑1 (MQ=60)

                                                                                       CCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAC       >  SRR4302541.3063881/1‑94 (MQ=60)

                                                                                       CCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAC       <  SRR4302541.789156/94‑1 (MQ=60)

                                                                                       CCATGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTAC       >  SRR4302541.5308331/1‑94 (MQ=60)

                                                                                          TGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCC    >  SRR4302541.1837875/1‑94 (MQ=60)

                                                                                          TGAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCC    <  SRR4302541.6466377/94‑1 (MQ=60)

                                                                                           GAGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCG   >  SRR4302541.527527/1‑94 (MQ=60)

                                                                                            AGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  >  SRR4302541.800104/1‑94 (MQ=60)

                                                                                            AGCGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  <  SRR4302541.4390135/94‑1 (MQ=60)

TTCCTCGTGGTGACGCTGTTTTGTTTCAACTTTATCGGCGATGGCTTGCGTGATGCCCTCGACCCGAAAGATCGTTAAGGAGTGCAGCCATGAACGTAATTGAAACTGCAACTGTGCCGCTCGCACAACAACAGGCTGACGCACTGCTGAACGTGAAAGATTTGCGTGTCACCTTTAGTACCCCGG  >  NC_000913/1302689‑1302874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 26 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`