Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,323,486	C→T	S239S (AGC→AGT)	yciQ →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,323,486	0	C	T	100.0%	1111.1 / NA	286	S239S (AGC→AGT)	yciQ	hypothetical protein
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (148/138); total (148/138)

Only 100 of 289 total aligned reads displayed.

GTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGCCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCAG  >  NC_000913/1323396‑1323575

gTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCa                                                                                         >  1:5347837/1‑93 (MQ=255)

gTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCa                                                                                         <  1:4083/93‑1 (MQ=255)

 ttttATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAt                                                                                        >  2:3355705/1‑93 (MQ=255)

   ttATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAtct                                                                                      <  2:3584489/93‑1 (MQ=255)

   ttATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAtct                                                                                      <  1:3021275/93‑1 (MQ=255)

   ttATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAtct                                                                                      >  2:3246466/1‑93 (MQ=255)

    tATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAtctt                                                                                     >  1:2285203/1‑93 (MQ=255)

     aTCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAtcttc                                                                                    >  2:1863582/1‑93 (MQ=255)

     aTCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAtcttc                                                                                    >  1:4264766/1‑93 (MQ=255)

     aTCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAtcttc                                                                                    >  1:3513391/1‑93 (MQ=255)

      tCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAtcttct                                                                                   <  1:921927/93‑1 (MQ=255)

       cGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATcttctt                                                                                  >  2:552908/1‑93 (MQ=255)

       cGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATcttctt                                                                                  <  2:5213424/93‑1 (MQ=255)

             gATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTAccc                                                                            <  1:5413490/93‑1 (MQ=255)

             gATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTAccc                                                                            >  1:1878787/1‑93 (MQ=255)

             gATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTAccc                                                                            >  2:2845734/1‑93 (MQ=255)

               tttCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTc                                                                          <  2:1971669/93‑1 (MQ=255)

                   aCGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACg                                                                      >  2:1731350/1‑93 (MQ=255)

                    cGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGt                                                                     >  1:3233947/1‑93 (MQ=255)

                     ggTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTc                                                                    >  1:470188/1‑93 (MQ=255)

                      gTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCa                                                                   >  1:5917325/1‑93 (MQ=255)

                       tCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCAt                                                                  >  1:633144/1‑93 (MQ=255)

                        ccTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATc                                                                 >  1:1463782/1‑93 (MQ=255)

                            tACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCgttg                                                             >  1:5997533/1‑93 (MQ=255)

                             aCCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCgttgt                                                            <  1:6387221/93‑1 (MQ=255)

                             aCCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCgttgt                                                            <  2:769955/93‑1 (MQ=255)

                                gCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTaa                                                         >  2:4385410/1‑93 (MQ=255)

                                 cTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAAt                                                        <  1:2432922/93‑1 (MQ=255)

                                  tGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAAtt                                                       >  2:4019287/1‑93 (MQ=255)

                                  tGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAAtt                                                       >  2:4130583/1‑93 (MQ=255)

                                  tGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAAtt                                                       >  1:1607312/1‑93 (MQ=255)

                                   ggCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAAttt                                                      <  2:264256/93‑1 (MQ=255)

                                    gCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTg                                                     >  2:6351595/1‑93 (MQ=255)

                                    gCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTg                                                     <  2:1235796/93‑1 (MQ=255)

                                      cTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGt                                                   <  1:1001719/93‑1 (MQ=255)

                                        cACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGttt                                                 >  2:4301333/1‑93 (MQ=255)

                                        cACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTAATCGTTGTTAATTTGGttt                                                 <  1:6290755/93‑1 (MQ=255)

                                         aCGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTc                                                >  1:5759338/1‑93 (MQ=255)

                                          cGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTcc                                               <  1:4683056/93‑1 (MQ=255)

                                           gCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCg                                              >  1:609761/1‑93 (MQ=255)

                                            cTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCgt                                             >  1:2080305/1‑93 (MQ=255)

                                            cTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCgt                                             <  2:2759358/93‑1 (MQ=255)

                                             tttACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCgtg                                            >  2:3910992/1‑93 (MQ=255)

                                              ttACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTTATCGTTGTTAATTTGGTTTCCgtgt                                           >  1:4025807/1‑93 (MQ=255)

                                              ttACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCgtgt                                           <  1:481052/93‑1 (MQ=255)

                                                aCTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCt                                         >  1:263738/1‑93 (MQ=255)

                                                aCTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCt                                         <  1:2566077/93‑1 (MQ=255)

                                                 cTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTg                                        >  2:5613947/1‑93 (MQ=255)

                                                  ttAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGt                                       <  2:4670251/93‑1 (MQ=255)

                                                   tAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGtt                                      <  2:3129925/93‑1 (MQ=255)

                                                     gCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTcc                                    <  1:384862/93‑1 (MQ=255)

                                                      cAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCt                                   <  1:4919441/93‑1 (MQ=255)

                                                      cAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCt                                   <  1:4123115/93‑1 (MQ=255)

                                                        aTGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTgg                                 >  2:3679372/1‑93 (MQ=255)

                                                         tGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGt                                <  1:3716049/93‑1 (MQ=255)

                                                          gCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGtt                               <  2:5466279/93‑1 (MQ=255)

                                                          gCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGtt                               >  2:5353708/1‑93 (MQ=255)

                                                             tCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTtgt                            >  1:1073549/1‑93 (MQ=255)

                                                              cGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTtgtg                           >  1:79686/1‑93 (MQ=255)

                                                              cGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTtgtg                           >  2:3790200/1‑93 (MQ=255)

                                                              cGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTtgtg                           <  1:2791122/93‑1 (MQ=255)

                                                              cGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTtgtg                           >  1:1275238/1‑93 (MQ=255)

                                                               ggCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTgg                          >  2:2253529/1‑93 (MQ=255)

                                                               ggCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTgg                          >  2:4912464/1‑93 (MQ=255)

                                                                gCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTggg                         >  2:2121074/1‑92 (MQ=255)

                                                                gCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGa                         >  2:592926/1‑93 (MQ=255)

                                                                gCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGa                         <  2:3450480/93‑1 (MQ=255)

                                                                gCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGa                         >  1:5243206/1‑93 (MQ=255)

                                                                 cTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGCTAATTTGGTCTCCGTGTCTGTTCCTGGTTTGTGGAt                        >  1:5450861/1‑93 (MQ=255)

                                                                  tCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATg                       >  2:2446572/1‑93 (MQ=255)

                                                                  tCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATg                       <  2:3492628/93‑1 (MQ=255)

                                                                    cGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGt                     <  1:3141541/93‑1 (MQ=255)

                                                                    cGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGt                     <  2:3229637/93‑1 (MQ=255)

                                                                     gCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGtt                    <  1:2031927/93‑1 (MQ=255)

                                                                     gCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTCCCGTGTCTGTTCCTGGTTTGTGGATGGtt                    <  2:4436769/93‑1 (MQ=255)

                                                                        aaCGACGAATATTTTCAGTCATCTTCTTTTATCCTCCACGTCATCGTTGTTAATTTGGGTTCCGTGTCTGTTCCTGGTTTGTGGATGGTttta                 >  1:6464739/1‑93 (MQ=255)

                                                                        aaCGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTtata                 >  1:4447100/1‑93 (MQ=255)

                                                                        aaCGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGCTTCCGTGTCTGTTCCTGGTTTGTGGATGGTtata                 >  1:3961938/1‑93 (MQ=255)

                                                                         acgacgAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTatat                >  2:901581/1‑93 (MQ=255)

                                                                         acgacgAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTatat                >  2:4542655/1‑93 (MQ=255)

                                                                          cgacgaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAtc               <  1:6058854/93‑1 (MQ=255)

                                                                           gacgaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAtct              <  2:3781608/93‑1 (MQ=255)

                                                                            gcgaATATTTTCAGTCATCTTCTTTTCCCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAtctc             <  2:6472874/92‑1 (MQ=255)

                                                                            acgaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAtctc             <  2:257574/93‑1 (MQ=255)

                                                                            acgaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAtctc             >  1:4222972/1‑93 (MQ=255)

                                                                            acgaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAtctc             <  1:5573552/93‑1 (MQ=255)

                                                                            acgaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAtctc             >  1:3446998/1‑93 (MQ=255)

                                                                            acgaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAtctc             >  2:2915881/1‑93 (MQ=255)

                                                                            acgaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAtctc             >  2:1328144/1‑93 (MQ=255)

                                                                              gaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTg           <  1:2911068/93‑1 (MQ=255)

                                                                              gaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTg           >  2:1687212/1‑93 (MQ=255)

                                                                              gaATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTg           >  2:1005214/1‑93 (MQ=255)

                                                                               aaTATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTgg          >  1:1774523/1‑93 (MQ=255)

                                                                                atatTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGa         >  2:5314647/1‑93 (MQ=255)

                                                                                  atTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAg       <  2:6160551/93‑1 (MQ=255)

                                                                                  atTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAg       >  2:1753062/1‑93 (MQ=255)

                                                                                   ttttCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAgc      >  1:1683630/1‑93 (MQ=255)

                                                                                      tCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCa   >  1:5055771/1‑93 (MQ=255)

                                                                                       cAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCAg  <  2:6095310/93‑1 (MQ=255)

                                                                                       cAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGCTTGTGGATGGTTATATCTCTGGAAGCGCAg  >  2:6029902/1‑93 (MQ=255)

GTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGCCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCAG  >  NC_000913/1323396‑1323575

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

TCCGTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGCCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCAGGCCG  >  NC_000913/1323393‑1323579

TCCGTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGT                                                                                               <  SRR4302534.536168/94‑1 (MQ=60)

TCCGTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGT                                                                                               <  SRR4302534.3482864/94‑1 (MQ=60)

  CGTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCA                                                                                             >  SRR4302534.5492030/1‑94 (MQ=60)

   GTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCAT                                                                                            <  SRR4302534.4197/94‑1 (MQ=60)

     TTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCT                                                                                          >  SRR4302534.3668755/1‑94 (MQ=60)

      TTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTT                                                                                         >  SRR4302534.2345853/1‑94 (MQ=60)

      TTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTT                                                                                         <  SRR4302534.3100409/94‑1 (MQ=60)

       TATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTC                                                                                        >  SRR4302534.4379959/1‑94 (MQ=60)

       TATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTC                                                                                        >  SRR4302534.3607906/1‑94 (MQ=60)

        ATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCT                                                                                       <  SRR4302534.2478405/94‑1 (MQ=60)

         TCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTT                                                                                      <  SRR4302534.945406/94‑1 (MQ=60)

          CGTGAAGATTTCACGGTCCTCTACCGCTGTCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTT                                                                                     <  SRR4302534.5954602/94‑1 (MQ=60)

          CGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATTTTCTTT                                                                                     >  SRR4302534.111062/1‑94 (MQ=60)

          CGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTT                                                                                     <  SRR4302534.3920066/94‑1 (MQ=60)

            TGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTA                                                                                   <  SRR4302534.5590400/94‑1 (MQ=60)

              AAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACC                                                                                 >  SRR4302534.2646184/1‑94 (MQ=60)

              AAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACC                                                                                 <  SRR4302534.2757686/94‑1 (MQ=60)

               AGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCC                                                                                >  SRR4302534.4568039/1‑94 (MQ=60)

               AGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCC                                                                                >  SRR4302534.1927716/1‑94 (MQ=60)

                GATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCT                                                                               <  SRR4302534.1614004/94‑1 (MQ=60)

                GATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCT                                                                               <  SRR4302534.5559107/94‑1 (MQ=60)

                   TTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCA                                                                            <  SRR4302534.3130923/94‑1 (MQ=60)

                    TCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCAC                                                                           <  SRR4302534.1228782/94‑1 (MQ=60)

                     CACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACG                                                                          <  SRR4302534.1230510/94‑1 (MQ=60)

                     CACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACG                                                                          <  SRR4302534.1068228/94‑1 (MQ=60)

                      ACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGT                                                                         >  SRR4302534.3319932/1‑94 (MQ=60)

                       CGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTC                                                                        <  SRR4302534.2803509/94‑1 (MQ=60)

                       CGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTC                                                                        <  SRR4302534.5157132/94‑1 (MQ=60)

                       CGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTC                                                                        >  SRR4302534.482033/1‑94 (MQ=60)

                       CGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTC                                                                        <  SRR4302534.4959166/94‑1 (MQ=60)

                        GGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCA                                                                       >  SRR4302534.4728516/1‑94 (MQ=60)

                        GGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCA                                                                       >  SRR4302534.6078000/1‑94 (MQ=60)

                         GTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCAT                                                                      >  SRR4302534.648507/1‑94 (MQ=60)

                         GTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCAT                                                                      >  SRR4302534.4868656/1‑94 (MQ=60)

                          tccttccCCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATC                                                                     <  SRR4302534.3784620/87‑1 (MQ=60)

                          TCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATC                                                                     >  SRR4302534.1502278/1‑94 (MQ=60)

                          TCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATC                                                                     <  SRR4302534.4491873/94‑1 (MQ=60)

                             TCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTT                                                                  <  SRR4302534.3528541/94‑1 (MQ=60)

                             TCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTT                                                                  <  SRR4302534.500016/94‑1 (MQ=60)

                             TCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTT                                                                  <  SRR4302534.6610702/94‑1 (MQ=60)

                             TCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTT                                                                  >  SRR4302534.6150081/1‑94 (MQ=60)

                              CTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTG                                                                 >  SRR4302534.489657/1‑94 (MQ=60)

                              CTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTG                                                                 >  SRR4302534.6160466/1‑94 (MQ=60)

                                TCCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTT                                                               <  SRR4302534.1652084/94‑1 (MQ=60)

                                ACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTT                                                               <  SRR4302534.6559752/94‑1 (MQ=60)

                                ACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTT                                                               <  SRR4302534.3031741/94‑1 (MQ=60)

                                 CCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTA                                                              <  SRR4302534.3070930/94‑1 (MQ=60)

                                  CGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAA                                                             >  SRR4302534.5758682/1‑94 (MQ=60)

                                   GCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAAT                                                            >  SRR4302534.2932210/1‑94 (MQ=60)

                                    CTGGCCTCCCGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTGCCCTCCACGTCATCGTTGTTAATT                                                           <  SRR4302534.1689991/94‑1 (MQ=60)

                                    CTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATT                                                           <  SRR4302534.2497599/94‑1 (MQ=60)

                                    CTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATT                                                           >  SRR4302534.1649289/1‑94 (MQ=60)

                                    CTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATT                                                           >  SRR4302534.5431795/1‑94 (MQ=60)

                                     TGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGCTATCGTTGTTAATTT                                                          >  SRR4302534.934472/1‑94 (MQ=60)

                                      GGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTG                                                         >  SRR4302534.3199725/1‑94 (MQ=60)

                                      GGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTG                                                         <  SRR4302534.3572778/94‑1 (MQ=60)

                                       GCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGG                                                        <  SRR4302534.6546053/94‑1 (MQ=60)

                                        CCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGT                                                       >  SRR4302534.61949/1‑94 (MQ=60)

                                         CTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTT                                                      <  SRR4302534.1027399/94‑1 (MQ=60)

                                          TCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTT                                                     <  SRR4302534.4155570/94‑1 (MQ=60)

                                           CACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTC                                                    >  SRR4302534.5915559/1‑94 (MQ=60)

                                           CACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTC                                                    <  SRR4302534.3878219/94‑1 (MQ=60)

                                           CACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTAATCGTTGTTAATTTGGTTTC                                                    <  SRR4302534.6460946/94‑1 (MQ=60)

                                            ACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCC                                                   >  SRR4302534.6260284/1‑94 (MQ=60)

                                             CGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCG                                                  <  SRR4302534.4810202/94‑1 (MQ=60)

                                             CGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCG                                                  >  SRR4302534.624591/1‑94 (MQ=60)

                                              GCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGT                                                 >  SRR4302534.2134791/1‑94 (MQ=60)

                                               CTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTG                                                >  SRR4302534.4122727/1‑94 (MQ=60)

                                                TTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTTATCGTTGTTAATTTGGTTTCCGTGT                                               >  SRR4302534.4133760/1‑94 (MQ=60)

                                                 TTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTC                                              <  SRR4302534.493126/94‑1 (MQ=60)

                                                  TACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCT                                             >  SRR4302534.270576/1‑94 (MQ=60)

                                                  TACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCT                                             >  SRR4302534.2557177/1‑94 (MQ=60)

                                                  TACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCT                                             >  SRR4302534.4825909/1‑94 (MQ=60)

                                                  TACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCT                                             <  SRR4302534.4182152/94‑1 (MQ=60)

                                                   ACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTG                                            <  SRR4302534.2634078/94‑1 (MQ=60)

                                                     TTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTT                                          <  SRR4302534.1360982/94‑1 (MQ=60)

                                                     TTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTT                                          >  SRR4302534.773622/1‑94 (MQ=60)

                                                        GCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCT                                       <  SRR4302534.394707/94‑1 (MQ=60)

                                                         CGATGCCACGCCTCCGCAACCCACGAATATTTTCAGTCGTCTCCTTTTCCCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTG                                      <  SRR4302534.5573056/94‑1 (MQ=60)

                                                         CAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTG                                      <  SRR4302534.4234096/94‑1 (MQ=60)

                                                         CAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTG                                      >  SRR4302534.4250714/1‑94 (MQ=60)

                                                         CAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTG                                      >  SRR4302534.4267665/1‑94 (MQ=60)

                                                         CAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTG                                      <  SRR4302534.5052775/94‑1 (MQ=60)

                                                         CAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTG                                      <  SRR4302534.93330/94‑1 (MQ=60)

                                                          AATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGG                                     >  SRR4302534.3973665/1‑94 (MQ=60)

                                                           ATGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGT                                    <  SRR4302534.5510290/94‑1 (MQ=60)

                                                            TGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTT                                   <  SRR4302534.3815960/94‑1 (MQ=60)

                                                            TGCCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGGT                                   >  SRR4302534.404461/1‑94 (MQ=60)

                                                              CCTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTG                                 >  SRR4302534.5438827/1‑94 (MQ=60)

                                                               CTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGT                                >  SRR4302534.2112518/1‑94 (MQ=60)

                                                               CTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGT                                >  SRR4302534.1754253/1‑94 (MQ=60)

                                                               CTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGT                                >  SRR4302534.6078372/1‑94 (MQ=60)

                                                               CTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGT                                <  SRR4302534.1898873/94‑1 (MQ=60)

                                                               CTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGT                                >  SRR4302534.410992/1‑94 (MQ=60)

                                                               CTCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGT                                >  SRR4302534.1101406/1‑94 (MQ=60)

                                                                TCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTG                               >  SRR4302534.6201383/1‑94 (MQ=60)

                                                                TCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTG                               <  SRR4302534.621326/94‑1 (MQ=60)

                                                                TCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTG                               >  SRR4302534.2062350/1‑94 (MQ=60)

                                                                TCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTG                               >  SRR4302534.1308807/1‑94 (MQ=60)

                                                                TCGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTG                               >  SRR4302534.81827/1‑94 (MQ=60)

                                                                 CGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGG                              <  SRR4302534.2864527/94‑1 (MQ=60)

                                                                 CGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGG                              >  SRR4302534.2250707/1‑94 (MQ=60)

                                                                 CGGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGGTTCCGTGTCTGTTGCTGGTTTGTGG                              >  SRR4302534.598285/1‑94 (MQ=60)

                                                                  GGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGT                             >  SRR4302534.3226187/1‑94 (MQ=60)

                                                                  GGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGA                             >  SRR4302534.1956444/1‑94 (MQ=60)

                                                                  GGCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGA                             >  SRR4302534.5384813/1‑94 (MQ=60)

                                                                   GCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGAT                            <  SRR4302534.5572725/94‑1 (MQ=60)

                                                                   GCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGAT                            <  SRR4302534.5600731/94‑1 (MQ=60)

                                                                   GCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGAT                            <  SRR4302534.26527/94‑1 (MQ=60)

                                                                   GCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGAT                            >  SRR4302534.6513864/1‑94 (MQ=60)

                                                                   GCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGAT                            <  SRR4302534.1023618/94‑1 (MQ=60)

                                                                   GCTCCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGCTAATTTGGTCTCCGTGTCTGTTCCTGGTTTGTGGAT                            >  SRR4302534.5597728/1‑94 (MQ=60)

                                                                      CCGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGT                         <  SRR4302534.4559141/94‑1 (MQ=60)

                                                                       CGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTT                        >  SRR4302534.5749311/1‑94 (MQ=60)

                                                                       CGCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTT                        <  SRR4302534.3224166/94‑1 (MQ=60)

                                                                        GCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTA                       <  SRR4302534.5287219/94‑1 (MQ=60)

                                                                        GCAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTA                       <  SRR4302534.2085060/94‑1 (MQ=60)

                                                                         CAAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTAT                      >  SRR4302534.2961053/1‑94 (MQ=60)

                                                                          AAACGACGAATATTTTCAGTCATCTTCTTTTATCCTCCACGTCATCGTTGTTAATTTGGGTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTTTA                     >  SRR4302534.6638861/1‑94 (MQ=60)

                                                                          AAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATA                     >  SRR4302534.359172/1‑94 (MQ=60)

                                                                          AAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATA                     >  SRR4302534.5247054/1‑94 (MQ=60)

                                                                          AAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATA                     >  SRR4302534.1890587/1‑94 (MQ=60)

                                                                          AAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATA                     >  SRR4302534.4377104/1‑94 (MQ=60)

                                                                          AAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATA                     >  SRR4302534.4567253/1‑94 (MQ=60)

                                                                          AAACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGCTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATA                     >  SRR4302534.4068013/1‑94 (MQ=60)

                                                                           AACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAT                    >  SRR4302534.1496286/1‑94 (MQ=60)

                                                                           AACGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATAT                    >  SRR4302534.6284690/1‑94 (MQ=60)

                                                                             CGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCT                  <  SRR4302534.6223602/94‑1 (MQ=60)

                                                                             CGACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCT                  >  SRR4302534.4230452/1‑94 (MQ=60)

                                                                              GACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTC                 >  SRR4302534.2554780/1‑94 (MQ=60)

                                                                              GACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTC                 >  SRR4302534.3539651/1‑94 (MQ=60)

                                                                              GACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTC                 >  SRR4302534.6500302/1‑94 (MQ=60)

                                                                              GACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTC                 >  SRR4302534.4336807/1‑94 (MQ=60)

                                                                               ACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCT                <  SRR4302534.1771032/94‑1 (MQ=60)

                                                                               ACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCT                <  SRR4302534.2090249/94‑1 (MQ=60)

                                                                               ACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCT                <  SRR4302534.3652257/94‑1 (MQ=60)

                                                                               ACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCT                <  SRR4302534.5724079/94‑1 (MQ=60)

                                                                               ACGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCT                <  SRR4302534.6337176/94‑1 (MQ=60)

                                                                                CGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTG               <  SRR4302534.2446291/94‑1 (MQ=60)

                                                                                CGAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTG               >  SRR4302534.5712119/1‑94 (MQ=60)

                                                                                 GAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGG              >  SRR4302534.1820581/1‑94 (MQ=60)

                                                                                 GAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGG              >  SRR4302534.1009934/1‑94 (MQ=60)

                                                                                 GAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGG              <  SRR4302534.2987479/94‑1 (MQ=60)

                                                                                 GAATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGG              <  SRR4302534.3246597/94‑1 (MQ=60)

                                                                                   ATATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAA            <  SRR4302534.5139814/94‑1 (MQ=60)

                                                                                     ATTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGC          >  SRR4302534.1727420/1‑94 (MQ=60)

                                                                                      TTTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCG         <  SRR4302534.1639989/94‑1 (MQ=60)

                                                                                       TTTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGC        >  SRR4302534.480318/1‑94 (MQ=60)

                                                                                        TTCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCA       >  SRR4302534.5192326/1‑94 (MQ=60)

                                                                                         TCAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCAG      <  SRR4302534.6604893/94‑1 (MQ=60)

                                                                                          CAGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATCGTTATATCTCTGGAAGCGCAGG     <  SRR4302534.4199148/94‑1 (MQ=60)

                                                                                           AGTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCAGGC    <  SRR4302534.3839235/94‑1 (MQ=60)

                                                                                            GTCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCAGGCC   <  SRR4302534.6001234/94‑1 (MQ=60)

                                                                                             TCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCAGGCCG  <  SRR4302534.1772070/94‑1 (MQ=60)

TCCGTTTTATCGTGAAGATTTCACGGTCCTCTACCGCTGGCCTCACGCTTTACTTAGCAATGCCTCGGCTCCGCAAACGACGAATATTTTCAGCCATCTTCTTTTACCCTCCACGTCATCGTTGTTAATTTGGTTTCCGTGTCTGTTCCTGGTTTGTGGATGGTTATATCTCTGGAAGCGCAGGCCG  >  NC_000913/1323393‑1323579

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 11 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`