Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,397,365	A→G	G62G (GGT→GGC)	fnr ←	Fnr

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,397,365	0	A	G	100.0%	1010.5 / NA	290	G62G (GGT→GGC)	fnr	Fnr
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (122/168); total (122/168)

Only 100 of 307 total aligned reads displayed.

GAAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCACCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTGT  >  NC_000913/1397275‑1397454

gAAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGcc                                                                                         >  1:810846/1‑93 (MQ=255)

 aaaCCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCa                                                                                        >  2:1846460/1‑93 (MQ=255)

  aaCCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAg                                                                                       >  1:651217/1‑93 (MQ=255)

    ccAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGcc                                                                                     <  1:6200278/93‑1 (MQ=255)

    ccAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGcc                                                                                     <  2:6406366/93‑1 (MQ=255)

    ccAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGcc                                                                                     >  2:3405507/1‑93 (MQ=255)

     cAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCt                                                                                    <  2:783796/93‑1 (MQ=255)

     cAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCt                                                                                    >  2:2804259/1‑93 (MQ=255)

      aGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCtt                                                                                   >  2:1535367/1‑93 (MQ=255)

      aGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCtt                                                                                   <  1:2800257/93‑1 (MQ=255)

       gTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTa                                                                                  <  2:493594/93‑1 (MQ=255)

         gATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTaaa                                                                                >  1:3469270/1‑93 (MQ=255)

          aTTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAAc                                                                               <  1:3299581/93‑1 (MQ=255)

           tttGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACa                                                                              >  1:2441275/1‑93 (MQ=255)

           tgtGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACa                                                                              <  1:2261658/91‑1 (MQ=255)

            ttGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAg                                                                             <  1:3528904/93‑1 (MQ=255)

             tGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGc                                                                            <  1:181092/93‑1 (MQ=255)

               gtcgtcgCCTTGCTCAGTGATGGTATACCTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGt                                                                          <  2:5698900/92‑1 (MQ=255)

                tcgtcgCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTc                                                                         >  1:3660014/1‑93 (MQ=255)

                 cgtcgCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCt                                                                        <  1:424558/93‑1 (MQ=255)

                   tcgCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTgg                                                                      <  2:4444584/93‑1 (MQ=255)

                   tcgCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTgg                                                                      <  1:1706433/93‑1 (MQ=255)

                     gCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGcc                                                                    >  1:2177161/1‑93 (MQ=255)

                     cccTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGcc                                                                    <  2:4098680/92‑1 (MQ=255)

                      ccTTGCTCAGTGATGGTATAACTTTTAATCGTCCCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCt                                                                   <  1:878725/93‑1 (MQ=255)

                      ccTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCt                                                                   >  2:5357916/1‑93 (MQ=255)

                       cTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCtt                                                                  >  2:4129760/1‑93 (MQ=255)

                       cTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCtt                                                                  <  2:5753399/93‑1 (MQ=255)

                       cTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCtt                                                                  <  1:4955332/93‑1 (MQ=255)

                       cTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCtt                                                                  >  2:114277/1‑93 (MQ=255)

                       cTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCtt                                                                  <  2:1259741/93‑1 (MQ=255)

                        ttGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCttt                                                                 >  1:5904161/1‑93 (MQ=255)

                        ttGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCttt                                                                 <  2:2271133/93‑1 (MQ=255)

                         tGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTc                                                                <  1:1418624/93‑1 (MQ=255)

                         tGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTc                                                                >  2:1501491/1‑93 (MQ=255)

                          gCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCt                                                               >  2:5117713/1‑93 (MQ=255)

                          gCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCt                                                               >  2:2865624/1‑93 (MQ=255)

                            tCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGa                                                             >  2:618629/1‑93 (MQ=255)

                            tCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGa                                                             >  1:2518230/1‑93 (MQ=255)

                            gcAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGa                                                             <  1:528013/92‑1 (MQ=255)

                              aGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAAt                                                           <  2:6449263/93‑1 (MQ=255)

                               gTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATa                                                          >  1:1168414/1‑93 (MQ=255)

                               gTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATa                                                          >  1:5682502/1‑93 (MQ=255)

                                 gATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAgg                                                        >  1:5470206/1‑93 (MQ=255)

                                   tGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGct                                                      >  1:1007101/1‑93 (MQ=255)

                                   tGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGct                                                      <  2:3707500/93‑1 (MQ=255)

                                   tGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGct                                                      <  1:5336935/93‑1 (MQ=255)

                                     gTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGcttc                                                    <  2:4351146/93‑1 (MQ=255)

                                      tataACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGcttct                                                   <  2:2608436/93‑1 (MQ=255)

                                       ataACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGcttctt                                                  <  1:4599547/93‑1 (MQ=255)

                                       ataACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGcttctt                                                  <  2:1589398/93‑1 (MQ=255)

                                       ataACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGcttctt                                                  <  2:319131/93‑1 (MQ=255)

                                            ttttAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCt                                             <  2:2988174/93‑1 (MQ=255)

                                            ttttAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCt                                             >  1:260089/1‑93 (MQ=255)

                                               tAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCaa                                          >  2:523809/1‑93 (MQ=255)

                                                aaTCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAAt                                         >  2:6300994/1‑93 (MQ=255)

                                                aaTCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAAt                                         >  1:1258775/1‑93 (MQ=255)

                                                 aTCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATg                                        <  2:4802168/93‑1 (MQ=255)

                                                 aTCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATg                                        >  2:5415877/1‑93 (MQ=255)

                                                  tCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGa                                       >  2:1086701/1‑93 (MQ=255)

                                                  tCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGa                                       >  2:3042158/1‑93 (MQ=255)

                                                    gTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGata                                     >  1:2089374/1‑93 (MQ=255)

                                                      aCCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGAtatt                                   <  1:5745539/93‑1 (MQ=255)

                                                       ccGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGAtatta                                  >  1:1225431/1‑93 (MQ=255)

                                                       ccGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCCGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGAtatta                                  <  2:1682854/93‑1 (MQ=255)

                                                         ggAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATc                                >  2:5662971/1‑93 (MQ=255)

                                                         ggAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATc                                <  1:1723755/93‑1 (MQ=255)

                                                         ggAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATc                                >  2:3251516/1‑93 (MQ=255)

                                                         ggAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTAAATAGGCTTCTTCCGCTCAATCAtattata                                >  2:4501323/1‑92 (MQ=255)

                                                          gAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCa                               <  2:381503/93‑1 (MQ=255)

                                                           aGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCaa                              <  2:5886666/93‑1 (MQ=255)

                                                           aGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCaa                              <  1:4286953/93‑1 (MQ=255)

                                                             cGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGc                            <  1:3869865/93‑1 (MQ=255)

                                                             cGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGc                            <  1:3551184/93‑1 (MQ=255)

                                                             cGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGc                            >  2:6116401/1‑93 (MQ=255)

                                                             cGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGc                            <  2:1633293/93‑1 (MQ=255)

                                                              ggATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCt                           <  1:6097201/93‑1 (MQ=255)

                                                               gATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTg                          <  1:725756/93‑1 (MQ=255)

                                                                aTGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGa                         >  1:2314540/1‑93 (MQ=255)

                                                                aTGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGa                         <  2:2197317/93‑1 (MQ=255)

                                                                   gCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCa                      <  2:4039548/93‑1 (MQ=255)

                                                                    cATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCaa                     >  1:1892829/1‑93 (MQ=255)

                                                                        aaGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTc                 <  2:1343808/93‑1 (MQ=255)

                                                                        aaGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTc                 >  2:2731907/1‑93 (MQ=255)

                                                                         aGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCa                <  2:872170/93‑1 (MQ=255)

                                                                          gCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCAt               <  1:4706854/93‑1 (MQ=255)

                                                                          gCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCAt               <  1:5634767/93‑1 (MQ=255)

                                                                           cGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATg              <  1:6394834/93‑1 (MQ=255)

                                                                           cGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATg              <  1:3352828/93‑1 (MQ=255)

                                                                            gATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGt             <  1:5155686/93‑1 (MQ=255)

                                                                             aTTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGtt            <  2:459578/93‑1 (MQ=255)

                                                                              tttAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTc           <  2:2940254/93‑1 (MQ=255)

                                                                               ttAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCg          <  1:2758322/93‑1 (MQ=255)

                                                                                  aGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTg       <  1:2850980/93‑1 (MQ=255)

                                                                                  aGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTg       >  1:4136492/1‑93 (MQ=255)

                                                                                    ttCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAg     <  2:4212412/93‑1 (MQ=255)

                                                                                    ttCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAg     <  1:4845724/93‑1 (MQ=255)

                                                                                      catcgCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAgtg   >  2:3501813/1‑93 (MQ=255)

                                                                                      catcgCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAgtg   >  2:6295808/1‑93 (MQ=255)

                                                                                      catcgCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAgtg   >  2:2401774/1‑93 (MQ=255)

GAAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCACCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTGT  >  NC_000913/1397275‑1397454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 24 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

ATGGAAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCACCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTGTGAA  >  NC_000913/1397272‑1397457

ATGGAAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCG                                                                                              >  SRR4302534.6382724/1‑94 (MQ=60)

  GGAAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCC                                                                                            >  SRR4302534.831223/1‑94 (MQ=60)

  GGAAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCC                                                                                            <  SRR4302534.2748174/94‑1 (MQ=60)

  GGAAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCC                                                                                            <  SRR4302534.6212115/94‑1 (MQ=60)

    AAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAG                                                                                          <  SRR4302534.2355036/94‑1 (MQ=60)

    AAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAG                                                                                          >  SRR4302534.5796482/1‑94 (MQ=60)

    AAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAG                                                                                          >  SRR4302534.667032/1‑94 (MQ=60)

     AACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGC                                                                                         >  SRR4302534.4402236/1‑94 (MQ=60)

      ACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCC                                                                                        <  SRR4302534.2903333/94‑1 (MQ=60)

      ACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCC                                                                                        >  SRR4302534.4865053/1‑94 (MQ=60)

      ACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCC                                                                                        >  SRR4302534.5809977/1‑94 (MQ=60)

      ACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCC                                                                                        <  SRR4302534.6361879/94‑1 (MQ=60)

       CCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCT                                                                                       <  SRR4302534.6368930/94‑1 (MQ=60)

       CCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCT                                                                                       <  SRR4302534.1754117/94‑1 (MQ=60)

       CCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCT                                                                                       >  SRR4302534.81042/1‑94 (MQ=60)

       CCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCA                                                                                       <  SRR4302534.1245401/94‑1 (MQ=60)

        CAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGCGCGGATGGCATAACGCGATTTAAGTTCATCGCCAGCCTT                                                                                      >  SRR4302534.2864501/1‑94 (MQ=60)

        CAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTT                                                                                      <  SRR4302534.6226921/94‑1 (MQ=60)

         AGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTA                                                                                     <  SRR4302534.2873906/94‑1 (MQ=60)

           TGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAA                                                                                   >  SRR4302534.3562518/1‑94 (MQ=60)

             ATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACA                                                                                 <  SRR4302534.3387647/94‑1 (MQ=60)

             ATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACA                                                                                 >  SRR4302534.2506162/1‑94 (MQ=60)

             ATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACA                                                                                 <  SRR4302534.2530683/94‑1 (MQ=60)

              TTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAG                                                                                <  SRR4302534.2661882/94‑1 (MQ=60)

              TGTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAG                                                                                <  SRR4302534.2321633/94‑1 (MQ=60)

               TTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGC                                                                               <  SRR4302534.4001061/94‑1 (MQ=60)

               TTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGC                                                                               <  SRR4302534.3623822/94‑1 (MQ=60)

               TTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGC                                                                               >  SRR4302534.3599415/1‑94 (MQ=60)

                TGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCG                                                                              >  SRR4302534.5227189/1‑94 (MQ=60)

                TGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCG                                                                              <  SRR4302534.1917946/94‑1 (MQ=60)

                TGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCG                                                                              <  SRR4302534.185855/94‑1 (MQ=60)

                TGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCG                                                                              <  SRR4302534.1250335/94‑1 (MQ=60)

                TGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCG                                                                              >  SRR4302534.898863/1‑94 (MQ=60)

                  CTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTC                                                                            >  SRR4302534.3758380/1‑94 (MQ=60)

                  CTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTC                                                                            >  SRR4302534.5869334/1‑94 (MQ=60)

                  CTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTC                                                                            >  SRR4302534.6469161/1‑94 (MQ=60)

                  CTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTC                                                                            >  SRR4302534.936683/1‑94 (MQ=60)

                  CTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTC                                                                            >  SRR4302534.2176181/1‑94 (MQ=60)

                   TCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCT                                                                           <  SRR4302534.1746498/94‑1 (MQ=60)

                   TCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCT                                                                           <  SRR4302534.2315310/94‑1 (MQ=60)

                   TCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCT                                                                           <  SRR4302534.5353687/94‑1 (MQ=60)

                    CGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTG                                                                          <  SRR4302534.5965336/94‑1 (MQ=60)

                    CGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTG                                                                          <  SRR4302534.435404/94‑1 (MQ=60)

                     GTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGG                                                                         <  SRR4302534.1259721/94‑1 (MQ=60)

                      TCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGC                                                                        <  SRR4302534.1750762/94‑1 (MQ=60)

                       CGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCC                                                                       <  SRR4302534.6609693/94‑1 (MQ=60)

                       CGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCC                                                                       >  SRR4302534.2234680/1‑94 (MQ=60)

                        GCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCT                                                                      >  SRR4302534.4104982/1‑94 (MQ=60)

                         CCTTGCTCAGTGATGGTATAACTTTTAATCGTCCCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTT                                                                     <  SRR4302534.900942/94‑1 (MQ=60)

                         CCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTT                                                                     <  SRR4302534.1059322/94‑1 (MQ=60)

                         CCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTT                                                                     <  SRR4302534.1265053/94‑1 (MQ=60)

                          CTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTT                                                                    >  SRR4302534.6064464/1‑94 (MQ=60)

                          CTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTT                                                                    <  SRR4302534.5089530/94‑1 (MQ=60)

                          CTTGCTCAGTGATGGTATAACTTTTAATCGAACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTT                                                                    <  SRR4302534.4624625/94‑1 (MQ=60)

                           TTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTC                                                                   >  SRR4302534.1101628/1‑94 (MQ=60)

                            TGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCT                                                                  <  SRR4302534.1455948/94‑1 (MQ=60)

                            TGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCT                                                                  <  SRR4302534.1827133/94‑1 (MQ=60)

                            TGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCT                                                                  <  SRR4302534.182072/94‑1 (MQ=60)

                            TGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCT                                                                  <  SRR4302534.4525334/94‑1 (MQ=60)

                            TGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCT                                                                  <  SRR4302534.3395427/94‑1 (MQ=60)

                             GCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTG                                                                 <  SRR4302534.3877555/94‑1 (MQ=60)

                             GCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTG                                                                 >  SRR4302534.356104/1‑94 (MQ=60)

                             GCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTG                                                                 >  SRR4302534.5772826/1‑94 (MQ=60)

                              CTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGA                                                                >  SRR4302534.5101053/1‑94 (MQ=60)

                              CTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGA                                                                >  SRR4302534.2585092/1‑94 (MQ=60)

                              CTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGA                                                                >  SRR4302534.5409403/1‑94 (MQ=60)

                               TCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAA                                                               <  SRR4302534.5516854/94‑1 (MQ=60)

                               GCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAA                                                               <  SRR4302534.541118/94‑1 (MQ=60)

                                CAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAAT                                                              <  SRR4302534.4291496/94‑1 (MQ=60)

                                 AGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATA                                                             <  SRR4302534.3429386/94‑1 (MQ=60)

                                 AGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATA                                                             <  SRR4302534.3553615/94‑1 (MQ=60)

                                 AGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATA                                                             >  SRR4302534.1199104/1‑94 (MQ=60)

                                 AGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATA                                                             >  SRR4302534.5836391/1‑94 (MQ=60)

                                  GTGATGGTATAAGTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAG                                                            <  SRR4302534.5850610/94‑1 (MQ=60)

                                  GTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAT                                                            <  SRR4302534.2084234/94‑1 (MQ=60)

                                   TGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGG                                                           >  SRR4302534.5617671/1‑94 (MQ=60)

                                   TGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGG                                                           >  SRR4302534.2369087/1‑94 (MQ=60)

                                     ATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCT                                                         <  SRR4302534.2907119/94‑1 (MQ=60)

                                     ATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCT                                                         >  SRR4302534.1032942/1‑94 (MQ=60)

                                      TGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTT                                                        >  SRR4302534.335031/1‑94 (MQ=60)

                                      TGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTT                                                        <  SRR4302534.5480831/94‑1 (MQ=60)

                                       GGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTC                                                       <  SRR4302534.2185608/94‑1 (MQ=60)

                                        GTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCT                                                      <  SRR4302534.780573/94‑1 (MQ=60)

                                         TATAACTTTTAATCGTACCGGAGCTGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTT                                                     <  SRR4302534.6226255/94‑1 (MQ=60)

                                         TATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTT                                                     <  SRR4302534.667647/94‑1 (MQ=60)

                                         TATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTT                                                     >  SRR4302534.2473787/1‑94 (MQ=60)

                                         TATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTT                                                     <  SRR4302534.1650046/94‑1 (MQ=60)

                                          ATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTC                                                    <  SRR4302534.4724382/94‑1 (MQ=60)

                                          ATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTC                                                    <  SRR4302534.4834612/94‑1 (MQ=60)

                                          ATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTC                                                    >  SRR4302534.4480687/1‑94 (MQ=60)

                                          ATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTC                                                    >  SRR4302534.2593901/1‑94 (MQ=60)

                                           TAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCC                                                   <  SRR4302534.1764969/94‑1 (MQ=60)

                                              CTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCT                                                >  SRR4302534.266854/1‑94 (MQ=60)

                                                  TAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAAT                                            >  SRR4302534.1291933/1‑94 (MQ=60)

                                                   AATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCAGCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATG                                           <  SRR4302534.1424720/94‑1 (MQ=60)

                                                    ATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGA                                          >  SRR4302534.2808273/1‑94 (MQ=60)

                                                      CGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATA                                        >  SRR4302534.2144153/1‑94 (MQ=60)

                                                        TACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATT                                      <  SRR4302534.5437036/94‑1 (MQ=60)

                                                         ACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTA                                     <  SRR4302534.5055427/94‑1 (MQ=60)

                                                         ACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTA                                     >  SRR4302534.1257694/1‑94 (MQ=60)

                                                         ACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTA                                     <  SRR4302534.5901324/94‑1 (MQ=60)

                                                           CGGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATC                                   <  SRR4302534.4310611/94‑1 (MQ=60)

                                                            GGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCA                                  >  SRR4302534.3633188/1‑94 (MQ=60)

                                                            GGAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCA                                  <  SRR4302534.1768527/94‑1 (MQ=60)

                                                             GAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAA                                 >  SRR4302534.3630415/1‑94 (MQ=60)

                                                             GAGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAA                                 <  SRR4302534.543422/94‑1 (MQ=60)

                                                              AGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAG                                <  SRR4302534.4403089/94‑1 (MQ=60)

                                                              AGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAG                                >  SRR4302534.2518827/1‑94 (MQ=60)

                                                              AGCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAG                                >  SRR4302534.86655/1‑94 (MQ=60)

                                                               GCGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGC                               <  SRR4302534.5970666/94‑1 (MQ=60)

                                                                CGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCT                              <  SRR4302534.3973774/94‑1 (MQ=60)

                                                                CGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCT                              <  SRR4302534.3646674/94‑1 (MQ=60)

                                                                CGGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCT                              >  SRR4302534.3525707/1‑94 (MQ=60)

                                                                 GGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTG                             <  SRR4302534.3012289/94‑1 (MQ=60)

                                                                 GGATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTG                             <  SRR4302534.6263014/94‑1 (MQ=60)

                                                                  GATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGA                            <  SRR4302534.743671/94‑1 (MQ=60)

                                                                  GATGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGA                            >  SRR4302534.2375957/1‑94 (MQ=60)

                                                                    TGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATC                          <  SRR4302534.4377835/94‑1 (MQ=60)

                                                                    TGGCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATC                          <  SRR4302534.4774912/94‑1 (MQ=60)

                                                                      GCATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAA                        >  SRR4302534.1942194/1‑94 (MQ=60)

                                                                       CATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAG                       >  SRR4302534.3648748/1‑94 (MQ=60)

                                                                        ATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGC                      >  SRR4302534.2271641/1‑94 (MQ=60)

                                                                        ATAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGC                      <  SRR4302534.2838503/94‑1 (MQ=60)

                                                                         TAAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCT                     <  SRR4302534.6435903/94‑1 (MQ=60)

                                                                          AAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTC                    <  SRR4302534.6333001/94‑1 (MQ=60)

                                                                          AAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTC                    >  SRR4302534.6620790/1‑94 (MQ=60)

                                                                          AAAGCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTC                    <  SRR4302534.5565375/94‑1 (MQ=60)

                                                                             GCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATG                 <  SRR4302534.4834637/94‑1 (MQ=60)

                                                                             GCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATG                 <  SRR4302534.5787273/94‑1 (MQ=60)

                                                                             GCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATG                 <  SRR4302534.5011173/94‑1 (MQ=60)

                                                                             GCGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATG                 <  SRR4302534.194145/94‑1 (MQ=60)

                                                                              CGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGT                >  SRR4302534.2619666/1‑94 (MQ=60)

                                                                              CGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGT                <  SRR4302534.6567536/94‑1 (MQ=60)

                                                                              CGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGT                <  SRR4302534.3442622/94‑1 (MQ=60)

                                                                              CGATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGT                >  SRR4302534.2067870/1‑94 (MQ=60)

                                                                               GATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTT               <  SRR4302534.5294720/94‑1 (MQ=60)

                                                                                ATTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTC              <  SRR4302534.3955918/94‑1 (MQ=60)

                                                                                 TTTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCG             <  SRR4302534.4870029/94‑1 (MQ=60)

                                                                                  TTAAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGT            <  SRR4302534.2830979/94‑1 (MQ=60)

                                                                                    AAGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTG          >  SRR4302534.4248114/1‑94 (MQ=60)

                                                                                     AGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGA         <  SRR4302534.2925869/94‑1 (MQ=60)

                                                                                     AGTTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGGTCGTTGA         >  SRR4302534.646399/1‑94 (MQ=60)

                                                                                       TTCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGT       <  SRR4302534.4977193/94‑1 (MQ=60)

                                                                                        TCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTG      <  SRR4302534.2399416/94‑1 (MQ=60)

                                                                                        TCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTG      <  SRR4302534.678515/94‑1 (MQ=60)

                                                                                        TCATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTG      >  SRR4302534.1371643/1‑94 (MQ=60)

                                                                                         CATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTGT     >  SRR4302534.3733678/1‑94 (MQ=60)

                                                                                         CATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTGT     <  SRR4302534.5693041/94‑1 (MQ=60)

                                                                                          ATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTGTG    <  SRR4302534.2808631/94‑1 (MQ=60)

                                                                                          ATCGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTGTG    >  SRR4302534.568814/1‑94 (MQ=60)

                                                                                            CGCCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTGTGAA  <  SRR4302534.2140746/94‑1 (MQ=60)

ATGGAAACCAGTGATTTGCTCGTCGCCTTGCTCAGTGATGGTATAACTTTTAATCGTACCGGAGCGGATGGCATAAAGCGATTTAAGTTCATCACCAGCCTTAAACAGCGTCTGGCCTTTCTGAATAGGCTTCTTCCGCTCAATGATATTATCAAGCTGATCAAGCTCATGTTCGTTGAGTGTGAA  >  NC_000913/1397272‑1397457

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 21 ≤` `ATCG/ATCG` `< 30 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`