Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,521,583	A→T	I85F (ATC→TTC)	b1452 →	putative receptor

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,521,583	0	A	T	100.0%	928.2 / NA	248	I85F (ATC→TTC)	b1452	putative receptor
Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (122/126); total (122/126)

Only 100 of 260 total aligned reads displayed.

CTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGATCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACG  >  NC_000913/1521493‑1521672

cTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTc                                                                                         <  2:1343916/93‑1 (MQ=255)

cTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTc                                                                                         >  1:2606014/1‑93 (MQ=255)

cTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTc                                                                                         <  2:5748533/93‑1 (MQ=255)

 tgtgGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTcc                                                                                        <  2:1249417/93‑1 (MQ=255)

 tgtgGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTcc                                                                                        <  1:5468198/93‑1 (MQ=255)

   tgGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCAt                                                                                      <  2:5979730/93‑1 (MQ=255)

    ggCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATa                                                                                     >  1:5565087/1‑93 (MQ=255)

    ggCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATa                                                                                     >  1:3774423/1‑93 (MQ=255)

    ggCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATa                                                                                     <  2:5878017/93‑1 (MQ=255)

     gCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATaa                                                                                    >  1:361007/1‑93 (MQ=255)

       tCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACg                                                                                  <  1:834280/93‑1 (MQ=255)

       tCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACg                                                                                  >  2:2309378/1‑93 (MQ=255)

          ccACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAtc                                                                               <  1:1099053/93‑1 (MQ=255)

          ccACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAtc                                                                               >  2:3804966/1‑93 (MQ=255)

          ccACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAtc                                                                               >  1:3542046/1‑93 (MQ=255)

          ccACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAtc                                                                               <  2:5552961/93‑1 (MQ=255)

           cACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAtct                                                                              <  1:1454729/93‑1 (MQ=255)

            aCTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAtctc                                                                             <  1:2787093/93‑1 (MQ=255)

            aCTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAtctc                                                                             >  2:1667019/1‑93 (MQ=255)

            aCTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAtctc                                                                             <  1:4148816/93‑1 (MQ=255)

             cTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCa                                                                            >  2:3996674/1‑93 (MQ=255)

             cTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCa                                                                            <  2:1058940/93‑1 (MQ=255)

              ttCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCaa                                                                           >  2:3268824/1‑93 (MQ=255)

              ttCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCaa                                                                           >  2:6138420/1‑93 (MQ=255)

               tCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAg                                                                          <  1:3111988/93‑1 (MQ=255)

                cGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGc                                                                         <  1:1326941/93‑1 (MQ=255)

                    aaGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGtt                                                                     <  2:4222413/93‑1 (MQ=255)

                    aaGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGtt                                                                     <  1:4374207/93‑1 (MQ=255)

                    aaGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGtt                                                                     <  2:146490/93‑1 (MQ=255)

                    aaGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGtt                                                                     >  2:6380976/1‑93 (MQ=255)

                    aaGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGtt                                                                     <  2:5948722/93‑1 (MQ=255)

                     aGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGttt                                                                    >  2:2909380/1‑93 (MQ=255)

                      gCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTg                                                                   >  1:600362/1‑93 (MQ=255)

                        cGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTggg                                                                 >  1:6205917/1‑92 (MQ=255)

                        cGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGt                                                                 <  1:4879413/93‑1 (MQ=255)

                          cAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGc                                                               >  2:4721862/1‑93 (MQ=255)

                            aaCTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGcca                                                             >  2:4049594/1‑93 (MQ=255)

                            aaCTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCGGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGcca                                                             <  1:305492/93‑1 (MQ=255)

                               tGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGccacca                                                          <  1:578239/93‑1 (MQ=255)

                               tGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGccacca                                                          >  2:649380/1‑93 (MQ=255)

                                ggATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCTGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCAt                                                         <  2:43590/93‑1 (MQ=255)

                                ggATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCAt                                                         >  1:5522779/1‑93 (MQ=255)

                                   tAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCaa                                                      >  2:1762700/1‑93 (MQ=255)

                                   tAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCaa                                                      <  1:1125908/93‑1 (MQ=255)

                                     aaGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATa                                                    >  1:115735/1‑93 (MQ=255)

                                     aaGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCATTTGGTGCCAACATCAATa                                                    <  1:6276993/93‑1 (MQ=255)

                                        gTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAaca                                                 >  2:3421140/1‑93 (MQ=255)

                                         tGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAacac                                                <  1:5325439/93‑1 (MQ=255)

                                          ggCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACg                                               <  1:2926346/93‑1 (MQ=255)

                                          ggCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACg                                               <  2:5136276/93‑1 (MQ=255)

                                           gCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGa                                              >  1:5666185/1‑93 (MQ=255)

                                           gCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGa                                              >  1:1606256/1‑93 (MQ=255)

                                            cGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGAc                                             <  1:1436389/93‑1 (MQ=255)

                                              tGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTc                                           <  1:4409917/93‑1 (MQ=255)

                                               ggTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAGGCCGTTTGGTGCCACCATCAATAACACGACTCa                                          <  1:938111/93‑1 (MQ=255)

                                                gTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAg                                         >  1:1999376/1‑93 (MQ=255)

                                                    aTCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGt                                     >  2:3868174/1‑93 (MQ=255)

                                                      cGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTtg                                   >  2:1822422/1‑93 (MQ=255)

                                                      cGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTtg                                   <  1:4846344/93‑1 (MQ=255)

                                                       gTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTtgt                                  >  1:1806782/1‑93 (MQ=255)

                                                       gTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTtgt                                  <  2:4554213/93‑1 (MQ=255)

                                                       gTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTtgt                                  <  1:4230580/93‑1 (MQ=255)

                                                        tCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTtgtg                                 >  1:1013916/1‑93 (MQ=255)

                                                        tCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTtgtg                                 <  1:2023609/93‑1 (MQ=255)

                                                        tCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTtgtg                                 <  2:2470603/93‑1 (MQ=255)

                                                        tCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTtgtg                                 <  2:444111/93‑1 (MQ=255)

                                                         cTTGATCCGGTCCCTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTgg                                <  2:1209609/93‑1 (MQ=255)

                                                          ttGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGt                               <  2:317093/93‑1 (MQ=255)

                                                          ttGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGt                               >  1:6020984/1‑93 (MQ=255)

                                                           tGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGtt                              <  2:4144231/93‑1 (MQ=255)

                                                           tGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGtt                              <  1:2336104/93‑1 (MQ=255)

                                                            gATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGttt                             <  1:4697775/93‑1 (MQ=255)

                                                             aTCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTg                            >  2:5061853/1‑93 (MQ=255)

                                                              tCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTgg                           >  2:2956398/1‑93 (MQ=255)

                                                               ccGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGt                          >  2:2550233/1‑93 (MQ=255)

                                                               ccGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGt                          <  1:2456838/93‑1 (MQ=255)

                                                                cGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTa                         >  2:4256048/1‑93 (MQ=255)

                                                                    cACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAacac                     <  2:3680220/93‑1 (MQ=255)

                                                                    cACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAacac                     >  1:1310817/1‑93 (MQ=255)

                                                                    cACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAacac                     >  2:5855282/1‑93 (MQ=255)

                                                                     tctctGGAAGTGACGCACCCGCTCCATAATGCTCTCAAGCCGTATGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACAcc                    <  1:1211924/92‑1 (MQ=255)

                                                                       tctGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGt                  >  2:3130518/1‑93 (MQ=255)

                                                                        ctGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTa                 >  2:469929/1‑93 (MQ=255)

                                                                            aaGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACa             <  1:3907189/93‑1 (MQ=255)

                                                                               tGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAgcg          <  2:502252/93‑1 (MQ=255)

                                                                               tGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAgcg          <  2:5413354/93‑1 (MQ=255)

                                                                                gACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAgcgc         >  2:666113/1‑93 (MQ=255)

                                                                                  cGCAGGCGTTCCAAAACGATCTCAAGCCGTTTGGTGCCACCATCAATACCACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCgg       <  1:3404430/93‑1 (MQ=255)

                                                                                   gCAGGCGTACCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACCGCGCGGt      <  1:6132766/93‑1 (MQ=255)

                                                                                    cAGCCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTc     <  1:2713315/93‑1 (MQ=255)

                                                                                     aGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCa    <  2:2941523/93‑1 (MQ=255)

                                                                                     aGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCa    <  1:560709/93‑1 (MQ=255)

                                                                                     aGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCa    <  1:645535/93‑1 (MQ=255)

                                                                                     aGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCa    >  2:2257378/1‑93 (MQ=255)

                                                                                     aGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCa    <  1:6474721/93‑1 (MQ=255)

                                                                                      ggCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCAc   <  2:944708/93‑1 (MQ=255)

                                                                                      ggCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCAc   >  1:5241325/1‑93 (MQ=255)

                                                                                      ggCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCAc   >  2:1518536/1‑93 (MQ=255)

                                                                                       gCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACg  >  2:6302092/1‑93 (MQ=255)

                                                                                       gCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACg  >  1:1859419/1‑93 (MQ=255)

CTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGATCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACG  >  NC_000913/1521493‑1521672

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

GCGCTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGATCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGGCG  >  NC_000913/1521490‑1521675

GCGCTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGT                                                                                              <  SRR4302534.3446066/94‑1 (MQ=60)

GCGCTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGT                                                                                              >  SRR4302534.3595977/1‑94 (MQ=60)

  GCTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTC                                                                                            >  SRR4302534.2674964/1‑94 (MQ=60)

  GCTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTC                                                                                            <  SRR4302534.1980632/94‑1 (MQ=60)

    TGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCA                                                                                          >  SRR4302534.856785/1‑94 (MQ=60)

    TGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCA                                                                                          <  SRR4302534.5615591/94‑1 (MQ=60)

      TGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATA                                                                                        >  SRR4302534.5715364/1‑94 (MQ=60)

      TGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATA                                                                                        >  SRR4302534.3875763/1‑94 (MQ=60)

       GGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAA                                                                                       >  SRR4302534.370212/1‑94 (MQ=60)

        GCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAAC                                                                                      <  SRR4302534.3431660/94‑1 (MQ=60)

          TCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGA                                                                                    <  SRR4302534.855274/94‑1 (MQ=60)

          TCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGA                                                                                    <  SRR4302534.2738289/94‑1 (MQ=60)

           CGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAT                                                                                   <  SRR4302534.3838180/94‑1 (MQ=60)

           CGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGAT                                                                                   <  SRR4302534.1760466/94‑1 (MQ=60)

            GCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATC                                                                                  >  SRR4302534.3637330/1‑94 (MQ=60)

             CCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCT                                                                                 <  SRR4302534.4499016/94‑1 (MQ=60)

             CCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCT                                                                                 <  SRR4302534.1127683/94‑1 (MQ=60)

              CACTTCGCCAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCCCTCTGGAAGTGACGCAGGCGTTCCATAACGATCTC                                                                                <  SRR4302534.5818493/94‑1 (MQ=60)

              CACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTC                                                                                <  SRR4302534.1492991/94‑1 (MQ=60)

               ACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCA                                                                               <  SRR4302534.2860398/94‑1 (MQ=60)

               ACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCA                                                                               <  SRR4302534.2042746/94‑1 (MQ=60)

               ACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCA                                                                               <  SRR4302534.4260805/94‑1 (MQ=60)

                 TTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAG                                                                             <  SRR4302534.761026/94‑1 (MQ=60)

                  TCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGC                                                                            <  SRR4302534.3193826/94‑1 (MQ=60)

                   CGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCC                                                                           <  SRR4302534.1361920/94‑1 (MQ=60)

                   CGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCC                                                                           >  SRR4302534.3539288/1‑94 (MQ=60)

                     CAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGT                                                                         >  SRR4302534.5680616/1‑94 (MQ=60)

                       AAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTT                                                                       <  SRR4302534.3917045/94‑1 (MQ=60)

                       AAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTT                                                                       <  SRR4302534.4492100/94‑1 (MQ=60)

                        AGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTG                                                                      >  SRR4302534.615000/1‑94 (MQ=60)

                        AGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTG                                                                      >  SRR4302534.5762878/1‑94 (MQ=60)

                        AGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGGTTG                                                                      >  SRR4302534.464141/1‑94 (MQ=60)

                         GCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGG                                                                     <  SRR4302534.1241406/94‑1 (MQ=60)

                         GCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGG                                                                     <  SRR4302534.4892181/94‑1 (MQ=60)

                          CCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGT                                                                    <  SRR4302534.5281521/94‑1 (MQ=60)

                          CCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGG                                                                    >  SRR4302534.6374655/1‑94 (MQ=60)

                           CGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTG                                                                   >  SRR4302534.1369701/1‑94 (MQ=60)

                           CGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTG                                                                   >  SRR4302534.929296/1‑94 (MQ=60)

                           CGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTG                                                                   <  SRR4302534.5011761/94‑1 (MQ=60)

                           CGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTG                                                                   >  SRR4302534.4917102/1‑94 (MQ=60)

                             CAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCC                                                                 <  SRR4302534.6337298/94‑1 (MQ=60)

                              AAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCA                                                                >  SRR4302534.3117168/1‑94 (MQ=60)

                               AACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCAC                                                               >  SRR4302534.1200818/1‑94 (MQ=60)

                               AACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCGGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCAC                                                               <  SRR4302534.313368/94‑1 (MQ=60)

                                 CTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCA                                                             >  SRR4302534.3866579/1‑94 (MQ=60)

                                  TGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCAT                                                            <  SRR4302534.592414/94‑1 (MQ=60)

                                  TGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCAT                                                            >  SRR4302534.5671812/1‑94 (MQ=60)

                                    GATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCA                                                          >  SRR4302534.2465917/1‑94 (MQ=60)

                                      TAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAAT                                                        <  SRR4302534.1155330/94‑1 (MQ=60)

                                       AAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATA                                                       >  SRR4302534.118813/1‑94 (MQ=60)

                                        AAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAA                                                      <  SRR4302534.1152290/94‑1 (MQ=60)

                                        AAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAA                                                      >  SRR4302534.1186744/1‑94 (MQ=60)

                                        AAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAA                                                      >  SRR4302534.2341284/1‑94 (MQ=60)

                                        AAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCATTTGGTGCCAACATCAATAA                                                      <  SRR4302534.6446894/94‑1 (MQ=60)

                                        AAGGCGGCGTGGTTTATCGTCTTGATGCGGGCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCAACCATCAATAA                                                      >  SRR4302534.2211902/1‑94 (MQ=60)

                                         AGGTGGCGTGGTTTGTCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAAC                                                     >  SRR4302534.6524685/1‑94 (MQ=60)

                                         AGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAAC                                                     <  SRR4302534.6179613/94‑1 (MQ=60)

                                         AGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAAC                                                     >  SRR4302534.2477157/1‑94 (MQ=60)

                                           GTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGTCGTTTGGTGCCACCATCAATAACAC                                                   >  SRR4302534.1317056/1‑94 (MQ=60)

                                            TGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACG                                                  >  SRR4302534.3183557/1‑94 (MQ=60)

                                            TGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACG                                                  <  SRR4302534.5469082/94‑1 (MQ=60)

                                             GGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGA                                                 >  SRR4302534.5819578/1‑94 (MQ=60)

                                             GGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGA                                                 >  SRR4302534.1648207/1‑94 (MQ=60)

                                             GGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGA                                                 <  SRR4302534.3003173/94‑1 (MQ=60)

                                             GGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGA                                                 >  SRR4302534.5459322/1‑94 (MQ=60)

                                              GCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGAC                                                >  SRR4302534.3254099/1‑94 (MQ=60)

                                               CGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACT                                               <  SRR4302534.1474193/94‑1 (MQ=60)

                                               CGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACT                                               >  SRR4302534.5739876/1‑94 (MQ=60)

                                               CGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCACAAGCCGTTTGGTGCCACCATCAATAACACGACT                                               <  SRR4302534.2869761/94‑1 (MQ=60)

                                                 TGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCA                                             <  SRR4302534.2889889/94‑1 (MQ=60)

                                                 TGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCA                                             <  SRR4302534.4251870/94‑1 (MQ=60)

                                                 TGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCA                                             <  SRR4302534.4528945/94‑1 (MQ=60)

                                                 TGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCA                                             >  SRR4302534.3673970/1‑94 (MQ=60)

                                                  GGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCCGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAG                                            <  SRR4302534.3659699/94‑1 (MQ=60)

                                                  GGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAGGCCGTTTGGTGCCACCATCAATAACACGACTCAG                                            <  SRR4302534.961973/94‑1 (MQ=60)

                                                  GGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAG                                            <  SRR4302534.662998/94‑1 (MQ=60)

                                                  GGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAG                                            >  SRR4302534.2051730/1‑94 (MQ=60)

                                                  GGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAG                                            <  SRR4302534.5093067/94‑1 (MQ=60)

                                                    TTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGAC                                          >  SRR4302534.6426321/1‑94 (MQ=60)

                                                    TTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGAC                                          >  SRR4302534.4508902/1‑94 (MQ=60)

                                                       ttctTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTT                                       <  SRR4302534.2790430/90‑1 (MQ=60)

                                                         CGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGT                                     >  SRR4302534.1853690/1‑94 (MQ=60)

                                                         CGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGT                                     >  SRR4302534.1853692/1‑94 (MQ=60)

                                                         CGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGT                                     <  SRR4302534.4977835/94‑1 (MQ=60)

                                                          GTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTG                                    >  SRR4302534.1040010/1‑94 (MQ=60)

                                                          GTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTG                                    >  SRR4302534.5654346/1‑94 (MQ=60)

                                                          GTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTG                                    <  SRR4302534.4344591/94‑1 (MQ=60)

                                                           TCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGG                                   <  SRR4302534.2076543/94‑1 (MQ=60)

                                                           TCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGG                                   <  SRR4302534.766205/94‑1 (MQ=60)

                                                            CTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGT                                  >  SRR4302534.1489035/1‑94 (MQ=60)

                                                            CTTGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGT                                  >  SRR4302534.6184610/1‑94 (MQ=60)

                                                              TGATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTT                                <  SRR4302534.2398097/94‑1 (MQ=60)

                                                               GATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTG                               >  SRR4302534.3130287/1‑94 (MQ=60)

                                                               GATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTA                               <  SRR4302534.4825287/94‑1 (MQ=60)

                                                                ATCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGG                              <  SRR4302534.2709840/94‑1 (MQ=60)

                                                                 TCCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGT                             <  SRR4302534.238970/94‑1 (MQ=60)

                                                                  CCGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTA                            <  SRR4302534.2522109/94‑1 (MQ=60)

                                                                   CGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAA                           >  SRR4302534.1149153/1‑94 (MQ=60)

                                                                   CGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAA                           >  SRR4302534.4335554/1‑94 (MQ=60)

                                                                   CGGTCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAA                           <  SRR4302534.4139134/94‑1 (MQ=60)

                                                                     GTCACTCGGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACA                         <  SRR4302534.161363/94‑1 (MQ=60)

                                                                      TCACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACAC                        >  SRR4302534.1345378/1‑94 (MQ=60)

                                                                       CACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACC                       <  SRR4302534.1750825/94‑1 (MQ=60)

                                                                        TCTCTGGAAGTGACGCACCCGCTCCATAATGCTCTCAAGCCGTATGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCG                      <  SRR4302534.1243820/94‑1 (MQ=60)

                                                                        ACTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCG                      >  SRR4302534.5667587/1‑94 (MQ=60)

                                                                         CTCTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGT                     >  SRR4302534.624647/1‑94 (MQ=60)

                                                                           CTGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAA                   >  SRR4302534.6131986/1‑94 (MQ=60)

                                                                            TGGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAA                  >  SRR4302534.1323739/1‑94 (MQ=60)

                                                                             GGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAAC                 <  SRR4302534.1944344/94‑1 (MQ=60)

                                                                             GGAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAAC                 <  SRR4302534.4999705/94‑1 (MQ=60)

                                                                              GAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACA                >  SRR4302534.2056195/1‑94 (MQ=60)

                                                                              GAAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACA                <  SRR4302534.1071907/94‑1 (MQ=60)

                                                                               AAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAG               <  SRR4302534.4011977/94‑1 (MQ=60)

                                                                               AAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAG               <  SRR4302534.5910312/94‑1 (MQ=60)

                                                                               AAGTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAG               >  SRR4302534.1546024/1‑94 (MQ=60)

                                                                                 GTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCG             <  SRR4302534.5741276/94‑1 (MQ=60)

                                                                                 GTGACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCG             <  SRR4302534.6305382/94‑1 (MQ=60)

                                                                                   GACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCG           <  SRR4302534.2669266/94‑1 (MQ=60)

                                                                                   GACGCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCG           >  SRR4302534.6141466/1‑94 (MQ=60)

                                                                                   GACCCAGGCGTTCCAGAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCG           <  SRR4302534.1357946/94‑1 (MQ=60)

                                                                                     CGCAGGCGTTCCAAAACGATCTCAAGCCGTTTGGTGCCACCATCAATACCACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGT         <  SRR4302534.3495856/94‑1 (MQ=60)

                                                                                      GCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACGGCGCGGTC        <  SRR4302534.6299585/94‑1 (MQ=60)

                                                                                      GCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTC        <  SRR4302534.5385392/94‑1 (MQ=60)

                                                                                      GCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGAGGTC        >  SRR4302534.4404237/1‑94 (MQ=60)

                                                                                      GCAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCAGCAATAACACGACTCAGACGTTTTGGTTTGGTAACACCGTCAACAGCGCGGTC        <  SRR4302534.2090214/94‑1 (MQ=60)

                                                                                      GCAGGCGTACCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACCGCGCGGTC        <  SRR4302534.6299589/94‑1 (MQ=60)

                                                                                       CAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCA       >  SRR4302534.1429917/1‑94 (MQ=60)

                                                                                       CAGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCA       >  SRR4302534.6577314/1‑94 (MQ=60)

                                                                                       CAGCCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCA       <  SRR4302534.2784951/94‑1 (MQ=60)

                                                                                        AGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCAC      <  SRR4302534.661188/94‑1 (MQ=60)

                                                                                        AGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCAC      >  SRR4302534.5382857/1‑94 (MQ=60)

                                                                                        AGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCAC      <  SRR4302534.6649146/94‑1 (MQ=60)

                                                                                        AGGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCAC      <  SRR4302534.574510/94‑1 (MQ=60)

                                                                                         GGCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACG     >  SRR4302534.1907820/1‑94 (MQ=60)

                                                                                          GCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGG    <  SRR4302534.5566433/94‑1 (MQ=60)

                                                                                          GCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGG    <  SRR4302534.4348104/94‑1 (MQ=60)

                                                                                          GCGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGG    >  SRR4302534.1194097/1‑94 (MQ=60)

                                                                                           CGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGGC   >  SRR4302534.639636/1‑94 (MQ=60)

                                                                                           CGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGGC   >  SRR4302534.2803362/1‑94 (MQ=60)

                                                                                           CGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGGC   >  SRR4302534.238747/1‑94 (MQ=60)

                                                                                           CGTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGGC   >  SRR4302534.1834619/1‑94 (MQ=60)

                                                                                            GTTCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGGCG  <  SRR4302534.1602733/94‑1 (MQ=60)

GCGCTGTGGCTCGCCACTTCGCAAAGCCGCAAACTGGATAAAGGTGGCGTGGTTTATCGTCTTGATCCGGTCACTCTGGAAGTGACGCAGGCGATCCATAACGATCTCAAGCCGTTTGGTGCCACCATCAATAACACGACTCAGACGTTGTGGTTTGGTAACACCGTAAACAGCGCGGTCACGGCG  >  NC_000913/1521490‑1521675

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 5 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`