Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A1 F1 I2 R1	884	257.2	12958910	96.9%	12557183	93.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,680,793	T→C	V207A (GTG→GCG)	rstA →	response transcriptional regulatory protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,680,793	0	T	C	99.5%	702.0 / NA	206	V207A (GTG→GCG)	rstA	response transcriptional regulatory protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (92/113); minor base A (0/1); total (92/114)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 208 total aligned reads displayed.

CTACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGTGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTG  >  NC_000913/1680703‑1680882

cTACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATGGTAGCGTGGACGCgg                                                                                         >  2:386023/1‑93 (MQ=255)

 tACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGc                                                                                        <  2:4487014/93‑1 (MQ=255)

 tACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGc                                                                                        <  2:6189729/93‑1 (MQ=255)

 tACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGc                                                                                        >  1:5522691/1‑93 (MQ=255)

  aCCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCt                                                                                       >  2:1634088/1‑93 (MQ=255)

   cccATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTa                                                                                      >  2:1766671/1‑93 (MQ=255)

   cccATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTa                                                                                      >  1:3800518/1‑93 (MQ=255)

    ccATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTAt                                                                                     >  2:5963689/1‑93 (MQ=255)

    ccATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTAt                                                                                     >  1:6428022/1‑93 (MQ=255)

    ccATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTAt                                                                                     >  2:3781589/1‑93 (MQ=255)

     cATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTAtt                                                                                    <  2:4726834/93‑1 (MQ=255)

     cATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTAtt                                                                                    <  1:2269312/93‑1 (MQ=255)

      aTGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTAttt                                                                                   >  1:4017653/1‑93 (MQ=255)

      aTGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTAttt                                                                                   <  1:6258369/93‑1 (MQ=255)

      aTGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTAttt                                                                                   <  2:3991335/93‑1 (MQ=255)

          cGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTcgcg                                                                               >  1:619764/1‑93 (MQ=255)

          cGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTcgcg                                                                               >  1:2311670/1‑93 (MQ=255)

           gggCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCgg                                                                              <  2:2705719/93‑1 (MQ=255)

            ggCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGt                                                                             <  1:3598474/93‑1 (MQ=255)

             gCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGtt                                                                            <  2:4095702/93‑1 (MQ=255)

              cAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTa                                                                           >  2:6389996/1‑93 (MQ=255)

                aaTCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAg                                                                         <  2:837354/93‑1 (MQ=255)

                 aTCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGa                                                                        <  1:2563546/93‑1 (MQ=255)

                  tCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGaa                                                                       >  2:1069400/1‑93 (MQ=255)

                    aTGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGaaaa                                                                     >  1:2919731/1‑93 (MQ=255)

                    aTGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGaaaa                                                                     >  2:242977/1‑93 (MQ=255)

                    aTGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGaaaa                                                                     >  1:4133113/1‑93 (MQ=255)

                      ggACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGaaaaaa                                                                   >  2:3014193/1‑93 (MQ=255)

                        gccGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAAc                                                                 <  1:5229803/92‑1 (MQ=255)

                        aCCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAAc                                                                 >  2:2147981/1‑93 (MQ=255)

                         ccGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACt                                                                >  1:6446835/1‑93 (MQ=255)

                           gcgATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGc                                                              >  1:5355436/1‑93 (MQ=255)

                           gcgATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGc                                                              <  2:1334494/93‑1 (MQ=255)

                            cgATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCt                                                             <  2:5092255/93‑1 (MQ=255)

                            cgATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCt                                                             <  2:2594189/93‑1 (MQ=255)

                             gATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTc                                                            <  2:6375493/93‑1 (MQ=255)

                              aTGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCg                                                           >  2:5868151/1‑93 (MQ=255)

                              aTGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCg                                                           >  1:195317/1‑93 (MQ=255)

                               tGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGa                                                          >  2:5035065/1‑93 (MQ=255)

                               tGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGa                                                          <  1:2671436/93‑1 (MQ=255)

                               tGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGa                                                          >  2:3145247/1‑93 (MQ=255)

                               tGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGa                                                          <  1:4376816/93‑1 (MQ=255)

                                gCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGAt                                                         <  1:2191132/93‑1 (MQ=255)

                                gCATTGCTGAAAAAGTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGAt                                                         <  2:1213049/93‑1 (MQ=255)

                                   ttGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAAc                                                      <  2:6298792/93‑1 (MQ=255)

                                        gAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAAcgccgc                                                 >  1:5532576/1‑93 (MQ=255)

                                        gAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAAcgccgc                                                 <  2:5738488/93‑1 (MQ=255)

                                           aaaTTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGa                                              <  1:3629938/93‑1 (MQ=255)

                                              tttACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAAcc                                           <  2:1526348/93‑1 (MQ=255)

                                               ttACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCt                                          <  2:1373751/93‑1 (MQ=255)

                                                 aCGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTa                                        <  2:3494723/93‑1 (MQ=255)

                                                   gcggcgTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATc                                      <  1:5684485/93‑1 (MQ=255)

                                                   gcggcgTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATc                                      >  2:4644341/1‑93 (MQ=255)

                                                    cggcgTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCg                                     <  2:457090/93‑1 (MQ=255)

                                                    cggcgTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCg                                     >  2:2077398/1‑93 (MQ=255)

                                                     ggcgTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGc                                    <  2:2835140/93‑1 (MQ=255)

                                                     ggcgTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGc                                    >  2:1703720/1‑93 (MQ=255)

                                                      gcgTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCa                                   <  1:5937146/93‑1 (MQ=255)

                                                        gTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCAtt                                 <  1:1046080/93‑1 (MQ=255)

                                                        gTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCAtt                                 <  1:3464543/93‑1 (MQ=255)

                                                        gTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCAtt                                 <  2:705576/93‑1 (MQ=255)

                                                        gTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCAtt                                 <  2:6077468/93‑1 (MQ=255)

                                                        gTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCAtt                                 <  1:3770309/93‑1 (MQ=255)

                                                         tCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTa                                <  2:3722971/93‑1 (MQ=255)

                                                          cAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTaa                               <  2:1856684/93‑1 (MQ=255)

                                                          cAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCAGATTaa                               >  2:2179532/1‑93 (MQ=255)

                                                            gTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTaaaa                             >  2:4782618/1‑93 (MQ=255)

                                                             ttATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAAc                            <  2:3412682/93‑1 (MQ=255)

                                                             ttATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAAc                            <  1:3137824/93‑1 (MQ=255)

                                                               aTGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACtg                          >  1:2522955/1‑93 (MQ=255)

                                                               aTGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACtg                          >  2:1428942/1‑93 (MQ=255)

                                                                tGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACtgt                         >  1:4768579/1‑93 (MQ=255)

                                                                tGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACtgt                         <  1:1569878/93‑1 (MQ=255)

                                                                tGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACtgt                         >  2:4314668/1‑93 (MQ=255)

                                                                 gACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACtgtg                        <  1:323663/93‑1 (MQ=255)

                                                                 gACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACtgtg                        >  2:1143996/1‑93 (MQ=255)

                                                                  aCGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGc                       >  1:491919/1‑93 (MQ=255)

                                                                    cgACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGt                     <  1:545899/92‑1 (MQ=255)

                                                                     gACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTa                    >  2:1571393/1‑93 (MQ=255)

                                                                     gACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTa                    >  2:3216685/1‑93 (MQ=255)

                                                                     gACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTa                    >  1:2030279/1‑93 (MQ=255)

                                                                      aCTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTaa                   <  2:945709/93‑1 (MQ=255)

                                                                       cTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAAc                  >  1:1139515/1‑93 (MQ=255)

                                                                        tGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTcaca                 >  2:236690/1‑93 (MQ=255)

                                                                        tGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACa                 <  1:4816767/93‑1 (MQ=255)

                                                                         ggATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACaa                >  2:2917823/1‑93 (MQ=255)

                                                                          gATCGTAGCGTGGACGAGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACaaa               <  1:5125301/93‑1 (MQ=255)

                                                                            tCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAgg             >  2:5610227/1‑93 (MQ=255)

                                                                             cGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAGCCTTATCGCATTAAAACTGTGCGTAACAAAGGc            <  1:1418650/93‑1 (MQ=255)

                                                                              gTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCt           >  1:5727620/1‑93 (MQ=255)

                                                                               tAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTa          <  2:5372644/93‑1 (MQ=255)

                                                                                aGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTAt         >  1:1702240/1‑93 (MQ=255)

                                                                                 gCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATc        <  1:937993/93‑1 (MQ=255)

                                                                                 gCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATc        <  1:739762/93‑1 (MQ=255)

                                                                                 gCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATc        <  2:872123/93‑1 (MQ=255)

                                                                                  cGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCt       >  1:5094338/1‑93 (MQ=255)

                                                                                  cGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCt       <  2:4833592/93‑1 (MQ=255)

                                                                                   gTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCtt      <  1:3505941/93‑1 (MQ=255)

                                                                                     ggACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCtttt    >  2:1672133/1‑93 (MQ=255)

                                                                                       aCGCGGCTATTCCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTg  >  2:1502288/1‑93 (MQ=255)

CTACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGTGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTG  >  NC_000913/1680703‑1680882

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 23 ≤` `ATCG/ATCG` `< 29 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

BRESEQ :: bam2aln output

AGCTACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGTGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCC  >  NC_000913/1680701‑1680886

AGCTACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCG                                                                                              >  SRR4302534.1031223/1‑94 (MQ=60)

  CTACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGC                                                                                            >  SRR4302534.5671721/1‑94 (MQ=60)

   TACGCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCT                                                                                           <  SRR4302534.390728/94‑1 (MQ=60)

    ACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTA                                                                                          <  SRR4302534.2677315/94‑1 (MQ=60)

    ACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTA                                                                                          >  SRR4302534.3783812/1‑94 (MQ=60)

    ACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTA                                                                                          >  SRR4302534.3902565/1‑94 (MQ=60)

    ACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTA                                                                                          <  SRR4302534.5630587/94‑1 (MQ=60)

     CCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTAT                                                                                         >  SRR4302534.6601356/1‑94 (MQ=60)

       CATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTT                                                                                       >  SRR4302534.4125355/1‑94 (MQ=60)

       CATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTT                                                                                       <  SRR4302534.2329484/94‑1 (MQ=60)

       CATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTT                                                                                       <  SRR4302534.5562320/94‑1 (MQ=60)

       CATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTT                                                                                       <  SRR4302534.5982142/94‑1 (MQ=60)

        ATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTC                                                                                      <  SRR4302534.6427951/94‑1 (MQ=60)

         TGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCG                                                                                     <  SRR4302534.771326/94‑1 (MQ=60)

           CCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCG                                                                                   >  SRR4302534.634812/1‑94 (MQ=60)

           CCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCG                                                                                   >  SRR4302534.2373021/1‑94 (MQ=60)

              GGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTT                                                                                <  SRR4302534.5830742/94‑1 (MQ=60)

              GGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTT                                                                                <  SRR4302534.3695246/94‑1 (MQ=60)

               GCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTA                                                                               <  SRR4302534.2403635/94‑1 (MQ=60)

                CAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAA                                                                              >  SRR4302534.3879688/1‑94 (MQ=60)

                CAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAA                                                                              <  SRR4302534.3701676/94‑1 (MQ=60)

                CAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAA                                                                              >  SRR4302534.6619935/1‑94 (MQ=60)

                   ATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAA                                                                           <  SRR4302534.2631486/94‑1 (MQ=60)

                     CATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAA                                                                         >  SRR4302534.4244577/1‑94 (MQ=60)

                     CATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAA                                                                         >  SRR4302534.990420/1‑94 (MQ=60)

                     CATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAA                                                                         >  SRR4302534.2996346/1‑94 (MQ=60)

                     CATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAA                                                                         >  SRR4302534.1750600/1‑94 (MQ=60)

                         GACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAAC                                                                     <  SRR4302534.5222397/94‑1 (MQ=60)

                          GCCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACT                                                                    <  SRR4302534.5370992/94‑1 (MQ=60)

                          ACCGCGATGCCTTGCTGAAAAAATTACGCGGCGGCAGTTATGACGGGCTGGATCGTAACGTGGACGCGGCCATTTCGCGGTTAAGAAAAAAACA                                                                    >  SRR4302534.5664451/1‑94 (MQ=60)

                          ACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACT                                                                    >  SRR4302534.6620569/1‑94 (MQ=60)

                          ACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACT                                                                    <  SRR4302534.2359750/94‑1 (MQ=60)

                           CCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTG                                                                   >  SRR4302534.4197711/1‑94 (MQ=60)

                            CGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGC                                                                  >  SRR4302534.1528802/1‑94 (MQ=60)

                            CGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGC                                                                  >  SRR4302534.5499806/1‑94 (MQ=60)

                              CGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTC                                                                <  SRR4302534.2143266/94‑1 (MQ=60)

                               GATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCG                                                               >  SRR4302534.200429/1‑94 (MQ=60)

                               GATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCG                                                               <  SRR4302534.5244677/94‑1 (MQ=60)

                                 TGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGAT                                                             <  SRR4302534.2742041/94‑1 (MQ=60)

                                 TGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGAT                                                             <  SRR4302534.4494786/94‑1 (MQ=60)

                                 TGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGAT                                                             <  SRR4302534.2626789/94‑1 (MQ=60)

                                  GCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATA                                                            <  SRR4302534.2249066/94‑1 (MQ=60)

                                   CATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAA                                                           <  SRR4302534.3573761/94‑1 (MQ=60)

                                       tctcaaaaaagtgcgcggcgtaggttatgtcgaACTGGATCGTAGCGTGGACCTGCCTATTCCGCGGTTAAGAAAAAAACcggtccataacggc                                                       <  SRR4302534.3999308/61‑15 (MQ=60)

                                       GCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCC                                                       <  SRR4302534.2007903/94‑1 (MQ=60)

                                       GCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGAGGTTAAGAAAAAAACTGCTCGATAACGCC                                                       >  SRR4302534.6525644/1‑94 (MQ=60)

                                       GCTAAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCC                                                       <  SRR4302534.3628978/94‑1 (MQ=60)

                                         TGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGC                                                     >  SRR4302534.5681901/1‑94 (MQ=60)

                                             AAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAA                                                 <  SRR4302534.3727512/94‑1 (MQ=60)

                                                TTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCT                                              <  SRR4302534.5855169/94‑1 (MQ=60)

                                                     GCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCG                                         <  SRR4302534.5838421/94‑1 (MQ=60)

                                                        GCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCAT                                      <  SRR4302534.6098365/94‑1 (MQ=60)

                                                          GTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTA                                    <  SRR4302534.1073117/94‑1 (MQ=60)

                                                          GTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTA                                    <  SRR4302534.3557681/94‑1 (MQ=60)

                                                          GTCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTA                                    <  SRR4302534.3871556/94‑1 (MQ=60)

                                                           TCAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAA                                   >  SRR4302534.5035074/1‑94 (MQ=60)

                                                            CAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAA                                  >  SRR4302534.324412/1‑94 (MQ=60)

                                                            CAGTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAA                                  >  SRR4302534.5486019/1‑94 (MQ=60)

                                                              GTTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAAC                                <  SRR4302534.134849/94‑1 (MQ=60)

                                                               TTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACT                               <  SRR4302534.689507/94‑1 (MQ=60)

                                                               TTATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACT                               <  SRR4302534.3220344/94‑1 (MQ=60)

                                                                TATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGTTAACGCCGCAGAACCTTATCGCATTAAAACTG                              <  SRR4302534.3135154/94‑1 (MQ=60)

                                                                TATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTG                              >  SRR4302534.2589914/1‑94 (MQ=60)

                                                                 ATGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGT                             >  SRR4302534.4898048/1‑94 (MQ=60)

                                                                  TGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTG                            <  SRR4302534.1610990/94‑1 (MQ=60)

                                                                  TGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTG                            <  SRR4302534.1148388/94‑1 (MQ=60)

                                                                  TGACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTG                            >  SRR4302534.1745365/1‑94 (MQ=60)

                                                                   GACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGC                           >  SRR4302534.504194/1‑94 (MQ=60)

                                                                   GACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGC                           <  SRR4302534.331983/94‑1 (MQ=60)

                                                                    ACGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCG                          <  SRR4302534.6379987/94‑1 (MQ=60)

                                                                     CGGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGT                         >  SRR4302534.6311574/1‑94 (MQ=60)

                                                                      GGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTA                        >  SRR4302534.227695/1‑94 (MQ=60)

                                                                      GGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTA                        <  SRR4302534.3389491/94‑1 (MQ=60)

                                                                      GGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTA                        >  SRR4302534.2083377/1‑94 (MQ=60)

                                                                      CGACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTA                        <  SRR4302534.559381/94‑1 (MQ=60)

                                                                        ACTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAAC                      >  SRR4302534.1169328/1‑94 (MQ=60)

                                                                         CTGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACA                     <  SRR4302534.2978800/94‑1 (MQ=60)

                                                                          TGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAA                    >  SRR4302534.4826177/1‑94 (MQ=60)

                                                                          TGGATCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAA                    <  SRR4302534.4947515/94‑1 (MQ=60)

                                                                            GATCGTAGCGTGGACGAGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAG                  <  SRR4302534.5263690/94‑1 (MQ=60)

                                                                              TCGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGC                <  SRR4302534.6356600/94‑1 (MQ=60)

                                                                               CGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAGCCTTATCGCATTAAAACTGTGCGTAACAAAGGCG               <  SRR4302534.1455977/94‑1 (MQ=60)

                                                                               CGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCT               <  SRR4302534.4341564/94‑1 (MQ=60)

                                                                               CGTAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCT               >  SRR4302534.5882812/1‑94 (MQ=60)

                                                                                 TAGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTAT             >  SRR4302534.1746465/1‑94 (MQ=60)

                                                                                  AGCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATC            >  SRR4302534.5671761/1‑94 (MQ=60)

                                                                                   GCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCT           >  SRR4302534.5231848/1‑94 (MQ=60)

                                                                                   GCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCT           <  SRR4302534.961851/94‑1 (MQ=60)

                                                                                   GCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCT           >  SRR4302534.488992/1‑94 (MQ=60)

                                                                                   GCGTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCT           <  SRR4302534.758087/94‑1 (MQ=60)

                                                                                     GTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTT         <  SRR4302534.3600257/94‑1 (MQ=60)

                                                                                     GTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTT         <  SRR4302534.5280853/94‑1 (MQ=60)

                                                                                     GTGGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTT         >  SRR4302534.4783632/1‑94 (MQ=60)

                                                                                       cgacaTGGNTATTTCGCGAGTAAGNANANNACTCCTCGATAACCCCCCAGAACCTTATCGCATTAAAACTGTGAGAAACAAAGGCTATCTTTTT       <  SRR4302534.4984115/89‑1 (MQ=44)

                                                                                       GGACGCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTT       <  SRR4302534.2940915/94‑1 (MQ=60)

                                                                                          CGCGGCTATGTCGCGGTTAAGAAAAAAGCTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCG    <  SRR4302534.4564086/94‑1 (MQ=60)

                                                                                           GCGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGC   <  SRR4302534.1725231/94‑1 (MQ=60)

                                                                                            CGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCC  >  SRR4302534.1954649/1‑94 (MQ=60)

AGCTACCCATGCCGGGCAAATCATGGACCGCGATGCATTGCTGAAAAATTTACGCGGCGTCAGTTATGACGGACTGGATCGTAGCGTGGACGTGGCTATTTCGCGGTTAAGAAAAAAACTGCTCGATAACGCCGCAGAACCTTATCGCATTAAAACTGTGCGTAACAAAGGCTATCTTTTTGCGCC  >  NC_000913/1680701‑1680886

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 0 ≤` `ATCG/ATCG` `< 2 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 33 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`