Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
744 |
338.8 |
17650688 |
97.8% |
17262372 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,681,154 |
T→C |
S83S (AGT→AGC) |
rstB → |
sensor histidine protein kinase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,681,154 | 0 | T | C | 99.7%
| 1079.3
/ NA
| 310 | S83S (AGT→AGC) | rstB | sensor histidine protein kinase |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base C (164/145); total (165/145) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 318 total aligned reads displayed.
ATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGTAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTAT > NC_000913/1681064‑1681243
|
aTTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCaa < 2:4304485/93‑1 (MQ=255)
ttGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAATTCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCaaa < 2:180028/93‑1 (MQ=255)
tGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCa < 2:751604/93‑1 (MQ=255)
tGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCa < 2:630711/93‑1 (MQ=255)
tGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCa > 2:4838836/1‑93 (MQ=255)
aTCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCtt < 2:6971852/93‑1 (MQ=255)
cccccACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTtgat < 1:7034180/93‑1 (MQ=255)
ccccACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTtgatg < 2:8423157/93‑1 (MQ=255)
cacaCGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGata > 2:4097785/1‑93 (MQ=255)
aacGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATAtt < 2:2456685/92‑1 (MQ=255)
gACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTcc < 2:2747233/93‑1 (MQ=255)
gACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTcc < 2:3023535/93‑1 (MQ=255)
aCTGTGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCa < 2:3759842/93‑1 (MQ=255)
aCTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCa < 2:2113509/93‑1 (MQ=255)
aCTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCa < 2:5159316/93‑1 (MQ=255)
cTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCAt < 2:2257271/93‑1 (MQ=255)
tGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATg < 2:1643656/93‑1 (MQ=255)
tGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATg > 2:1307389/1‑93 (MQ=255)
gaaaaaCTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCAcc < 2:3139235/91‑1 (MQ=255)
gTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCAcc < 2:7241859/93‑1 (MQ=255)
tAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCg > 1:84163/1‑93 (MQ=255)
aaaaCTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGa > 1:336242/1‑93 (MQ=255)
aaaCTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGAc < 1:3803180/93‑1 (MQ=255)
aaaCTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGAc < 1:6489344/93‑1 (MQ=255)
aaaCTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGAc < 1:4979567/93‑1 (MQ=255)
aaCTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACt < 1:3629925/93‑1 (MQ=255)
aaCTCTGAAAGAGAGGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACt < 2:8692793/93‑1 (MQ=255)
tctGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCg > 2:202749/1‑93 (MQ=255)
tGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTg < 1:8189372/93‑1 (MQ=255)
gAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACTATCTTGATGATATTTCCATGCACCGACTGCGTgg < 2:5498669/93‑1 (MQ=255)
gAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTgg > 2:4028133/1‑93 (MQ=255)
gAAAGAGATGGATTGAAATCTCTCTTTCGATCCGCGTGGCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTgg < 1:2375575/93‑1 (MQ=255)
aaaGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTggg > 1:1888745/1‑92 (MQ=255)
aaaGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTggc < 1:3218239/93‑1 (MQ=255)
aaaGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTggc > 2:7184120/1‑93 (MQ=255)
aaaGAGATGCATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTAATAAAATACCATCTTGCTGATATTTCCATGCTCCGACTGCGTggc > 2:5815999/1‑93 (MQ=255)
aaGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTggcg > 2:150510/1‑93 (MQ=255)
aaGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTggcg < 1:1216082/93‑1 (MQ=255)
agagATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTggcgg > 2:4165554/1‑93 (MQ=255)
agagATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTggcgg > 1:746117/1‑93 (MQ=255)
agagATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTggcgg > 1:2761687/1‑93 (MQ=255)
gagaTGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTggcggc > 1:4924584/1‑93 (MQ=255)
agaTTGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGgcggcg > 2:5604439/1‑93 (MQ=255)
agaTGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGgcggcg > 1:6396613/1‑93 (MQ=255)
agaTGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGgcggcg < 1:8534530/93‑1 (MQ=255)
aTGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGaa > 1:4796789/1‑93 (MQ=255)
aTGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGaa > 1:7717691/1‑93 (MQ=255)
ggATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAAt > 1:106888/1‑93 (MQ=255)
ggATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAAt < 2:6079154/93‑1 (MQ=255)
tttAAATCGCTCTTTCTATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGt < 1:3008261/93‑1 (MQ=255)
ttAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTc < 2:3447167/93‑1 (MQ=255)
tAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCg < 1:6652858/93‑1 (MQ=255)
tAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCg > 2:8040367/1‑93 (MQ=255)
aaaTCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGc > 2:5624607/1‑93 (MQ=255)
aaaTCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGc > 1:2620426/1‑93 (MQ=255)
aaTCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGcc > 2:4781767/1‑93 (MQ=255)
aTCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGccc > 1:406841/1‑93 (MQ=255)
tctctcTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCt > 2:3474336/1‑93 (MQ=255)
ctctttTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTg < 2:1955837/93‑1 (MQ=255)
tctctTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTgg > 1:4105701/1‑93 (MQ=255)
ctctTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGa < 2:1234697/93‑1 (MQ=255)
tctTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAc < 1:2258816/93‑1 (MQ=255)
tctTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAc > 1:1362646/1‑93 (MQ=255)
tctTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAc > 1:522957/1‑93 (MQ=255)
tctTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAc > 1:6932942/1‑93 (MQ=255)
tttCGATCTGCGTGTGGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGa < 2:6788771/93‑1 (MQ=255)
ttCGATCTGCGTGTCGAGCCACTGAGTAAATACCATCTTGTTGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCTCTCTGGACGAt > 2:7838719/1‑93 (MQ=255)
cGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCa < 1:4158921/93‑1 (MQ=255)
cGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCa > 2:3906080/1‑93 (MQ=255)
gATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAg > 2:8540561/1‑93 (MQ=255)
aTCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAga > 1:4377979/1‑92 (MQ=255)
aTCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGt > 1:5517044/1‑93 (MQ=255)
aTCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGt > 1:976941/1‑93 (MQ=255)
tCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTa < 1:1549655/93‑1 (MQ=255)
tCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTa > 2:8228990/1‑93 (MQ=255)
tCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTa > 1:5431739/1‑93 (MQ=255)
cTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTac < 1:5643084/93‑1 (MQ=255)
cTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTac < 1:5781812/93‑1 (MQ=255)
cTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTac < 2:5710468/93‑1 (MQ=255)
cTGCGTGTCGAGCCACTAAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTac < 2:4521185/93‑1 (MQ=255)
tGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTaca > 1:3072452/1‑93 (MQ=255)
gCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTacac < 1:3450083/93‑1 (MQ=255)
gtgtCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGt > 2:176696/1‑93 (MQ=255)
tgtCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGtt > 1:6539381/1‑93 (MQ=255)
gtCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGttt > 2:4504464/1‑93 (MQ=255)
tCGAGCCACTGAGCAAATACCATCTTGATTATATTTCCATGCTCCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGtttt < 1:2105357/93‑1 (MQ=255)
tCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGtttt > 1:5121477/1‑93 (MQ=255)
gAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTg > 2:332728/1‑93 (MQ=255)
gAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTg < 1:3302177/93‑1 (MQ=255)
gCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCa < 1:2433977/93‑1 (MQ=255)
gCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCa > 1:6629195/1‑93 (MQ=255)
gCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCa < 2:3543373/93‑1 (MQ=255)
cACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGc > 1:3859107/1‑93 (MQ=255)
cACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGc < 2:5943335/93‑1 (MQ=255)
aCTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCg < 1:6124345/93‑1 (MQ=255)
aCTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCg > 1:8643206/1‑93 (MQ=255)
cTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGt < 2:6412231/93‑1 (MQ=255)
tGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTa > 1:7224351/1‑93 (MQ=255)
gAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTAt > 2:7040504/1‑93 (MQ=255)
gAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTAt < 2:5281402/93‑1 (MQ=255)
|
ATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGTAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTAT > NC_000913/1681064‑1681243
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CGAATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGTAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCCCG > NC_000913/1681061‑1681247
|
CGAATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGC > SRR4302541.4349685/1‑94 (MQ=60)
CGAATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGC > SRR4302541.3983146/1‑94 (MQ=60)
CGAATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGC < SRR4302541.3112355/94‑1 (MQ=60)
GAATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCA > SRR4302541.4424126/1‑94 (MQ=60)
GAATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCA < SRR4302541.7588905/94‑1 (MQ=60)
GAATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCA < SRR4302541.7589175/94‑1 (MQ=60)
GAATTGCGTGAGATCCCCCCACACGACTGGGGGAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCA > SRR4302541.4424127/1‑94 (MQ=60)
ATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAA > SRR4302541.65150/1‑94 (MQ=60)
TTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAAT < SRR4302541.5005491/94‑1 (MQ=60)
TCGTGAGATCCCCCCACACGACTGGGGTAAAACCCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATAC < SRR4302541.5602742/94‑1 (MQ=60)
CGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACC > SRR4302541.5629160/1‑94 (MQ=60)
GTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCA > SRR4302541.1721072/1‑94 (MQ=60)
TGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCAT > SRR4302541.6644574/1‑94 (MQ=60)
GAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATC > SRR4302541.243831/1‑94 (MQ=60)
GATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTT > SRR4302541.8407564/1‑94 (MQ=60)
ATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTG > SRR4302541.2284411/1‑94 (MQ=60)
ATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTG < SRR4302541.3307894/94‑1 (MQ=60)
CCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATT > SRR4302541.6601151/1‑94 (MQ=60)
CCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATG < SRR4302541.7108955/94‑1 (MQ=60)
CCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATA > SRR4302541.6601150/1‑94 (MQ=60)
CCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGA > SRR4302541.5187465/1‑94 (MQ=60)
CACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATAT > SRR4302541.7059429/1‑94 (MQ=60)
CACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATAT < SRR4302541.1382809/94‑1 (MQ=60)
CACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATAT > SRR4302541.3368316/1‑94 (MQ=60)
CACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGGGTCGAGCCACTGAGCAAATACCATCTTGATGATAT > SRR4302541.5402494/1‑94 (MQ=60)
CACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTT < SRR4302541.5764302/94‑1 (MQ=60)
CACGACTGGGGTAAAACTCTGAAAGAGATGGAGTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACCGAGCAAATACCATCTTGATGATATTT > SRR4302541.7888547/1‑94 (MQ=60)
gctgaGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCAT < SRR4302541.7302743/89‑1 (MQ=60)
ACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCAT < SRR4302541.4750187/94‑1 (MQ=60)
CTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATG < SRR4302541.3754239/94‑1 (MQ=60)
TGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGC > SRR4302541.1417965/1‑94 (MQ=60)
GGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACC < SRR4302541.5897246/94‑1 (MQ=60)
GTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCG > SRR4302541.84890/1‑94 (MQ=60)
GTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCG > SRR4302541.3100066/1‑94 (MQ=60)
TAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGA < SRR4302541.8646223/94‑1 (MQ=60)
TAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGA > SRR4302541.339255/1‑94 (MQ=60)
AAAACTCTGAAAGCGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGAC > SRR4302541.3503204/1‑94 (MQ=60)
AAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACT < SRR4302541.3841465/94‑1 (MQ=60)
AAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACT < SRR4302541.5030631/94‑1 (MQ=60)
AAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACT < SRR4302541.8528632/94‑1 (MQ=60)
AAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACT < SRR4302541.5030632/94‑1 (MQ=60)
AAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACT < SRR4302541.6555493/94‑1 (MQ=60)
AAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACAGACT > SRR4302541.6465040/1‑94 (MQ=60)
AACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTG < SRR4302541.464963/94‑1 (MQ=60)
AACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTG < SRR4302541.3666723/94‑1 (MQ=60)
AACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTG > SRR4302541.8349874/1‑94 (MQ=60)
CTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCG > SRR4302541.3926868/1‑94 (MQ=60)
CTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCG > SRR4302541.670130/1‑94 (MQ=60)
CTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCG > SRR4302541.670129/1‑94 (MQ=60)
CTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCG < SRR4302541.2604780/94‑1 (MQ=60)
CTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGATCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTG > SRR4302541.6799677/1‑94 (MQ=60)
TGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGG < SRR4302541.8278765/94‑1 (MQ=60)
TGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGG < SRR4302541.3297658/94‑1 (MQ=60)
TGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGG < SRR4302541.386510/94‑1 (MQ=60)
GAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGG > SRR4302541.7481331/1‑94 (MQ=60)
GAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGG > SRR4302541.1906884/1‑94 (MQ=60)
GAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGC < SRR4302541.2398777/94‑1 (MQ=60)
GAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGC > SRR4302541.5130193/1‑94 (MQ=60)
GAAAGAGATGGATTGAAATCTCTCTTTCGATCCGCGTGGCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGC < SRR4302541.2398776/94‑1 (MQ=60)
AAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCG < SRR4302541.3250751/94‑1 (MQ=60)
AAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCG > SRR4302541.8839420/1‑94 (MQ=60)
AAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCG > SRR4302541.6250612/1‑94 (MQ=60)
AAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCG > SRR4302541.3082929/1‑94 (MQ=60)
AAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCG > SRR4302541.2661912/1‑94 (MQ=60)
AAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGG > SRR4302541.753185/1‑94 (MQ=60)
AAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGG > SRR4302541.2789459/1‑94 (MQ=60)
AAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGG < SRR4302541.1227966/94‑1 (MQ=60)
AGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGC > SRR4302541.3396738/1‑94 (MQ=60)
AGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGC > SRR4302541.4974827/1‑94 (MQ=60)
AGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGC < SRR4302541.934550/94‑1 (MQ=60)
AGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTACCATGCACCGACTGCGTGGCGGC > SRR4302541.3880094/1‑94 (MQ=60)
GAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATGCCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCG > SRR4302541.215697/1‑94 (MQ=60)
GAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCG > SRR4302541.6461902/1‑94 (MQ=60)
GAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCG < SRR4302541.7994933/94‑1 (MQ=60)
AGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGA < SRR4302541.8626309/94‑1 (MQ=60)
AGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGA > SRR4302541.195897/1‑94 (MQ=60)
AGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGA > SRR4302541.4135011/1‑94 (MQ=60)
AGATGGATTTAAATCTCTCTTTCGATCTGCGCGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGA > SRR4302541.4135010/1‑94 (MQ=60)
AGATGGATGTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGA < SRR4302541.842635/94‑1 (MQ=60)
GATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAA > SRR4302541.7799778/1‑94 (MQ=60)
GATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAA > SRR4302541.2338070/1‑94 (MQ=60)
GATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAA > SRR4302541.4845718/1‑94 (MQ=60)
GATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAA > SRR4302541.5713261/1‑94 (MQ=60)
GATGGATTTAAATCTCTCTTTCAATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAA > SRR4302541.3100969/1‑94 (MQ=60)
TGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAAT > SRR4302541.107774/1‑94 (MQ=60)
TGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTAAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAAT < SRR4302541.5409263/94‑1 (MQ=60)
GGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCANCGACTGCGTGGNGNCGAANTT > SRR4302541.5489687/1‑94 (MQ=60)
GGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGAACCGAgtgcggggcgcggagagt > SRR4302541.2743314/1‑76 (MQ=60)
GATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTG > SRR4302541.5251996/1‑94 (MQ=60)
GATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTG > SRR4302541.5251995/1‑94 (MQ=60)
ATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGT > SRR4302541.3958309/1‑94 (MQ=60)
TTTAAATCTGTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTC < SRR4302541.6638559/94‑1 (MQ=60)
TTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTC > SRR4302541.7123177/1‑94 (MQ=60)
TTTAAATCGCTCTTTCTATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTC < SRR4302541.3038632/94‑1 (MQ=60)
TTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCG > SRR4302541.4406040/1‑94 (MQ=60)
TTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCG > SRR4302541.6338558/1‑94 (MQ=60)
TAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGC < SRR4302541.6721115/94‑1 (MQ=60)
TAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGC > SRR4302541.2646581/1‑94 (MQ=60)
AAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCC > SRR4302541.375763/1‑94 (MQ=60)
AAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCC > SRR4302541.2149246/1‑94 (MQ=60)
AATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCC > SRR4302541.410612/1‑94 (MQ=60)
AATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCC > SRR4302541.4275775/1‑94 (MQ=60)
AATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCC > SRR4302541.5502894/1‑94 (MQ=60)
atctttttttgcaccgGCGTGTCGAGCCACGGAGCAAATACCATCTTGATGAGATTTCCATGCACCTACTTCGTGGCGGCGAAATTGTCGCCCT < SRR4302541.1159353/78‑1 (MQ=60)
ATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCT > SRR4302541.7795269/1‑94 (MQ=60)
ATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCT < SRR4302541.1159352/94‑1 (MQ=60)
ATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGACCT > SRR4302541.3444816/1‑94 (MQ=60)
CTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGG < SRR4302541.1968209/94‑1 (MQ=60)
CTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGG < SRR4302541.4960730/94‑1 (MQ=60)
CTCTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGG > SRR4302541.4146237/1‑94 (MQ=60)
CTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAC > SRR4302541.527848/1‑94 (MQ=60)
CTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAC < SRR4302541.6732642/94‑1 (MQ=60)
CTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAC > SRR4302541.1376077/1‑94 (MQ=60)
CTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAC > SRR4302541.7006917/1‑94 (MQ=60)
CTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAC > SRR4302541.7006918/1‑94 (MQ=60)
CTCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGAC > SRR4302541.2694579/1‑94 (MQ=60)
TCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACG < SRR4302541.2280627/94‑1 (MQ=60)
TCTTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACG > SRR4302541.2896153/1‑94 (MQ=60)
TTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGAT < SRR4302541.3539962/94‑1 (MQ=60)
TTTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGAT > SRR4302541.4159094/1‑94 (MQ=60)
TTCGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATC < SRR4302541.3127669/94‑1 (MQ=60)
CGATCTGGGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAG < SRR4302541.4310157/94‑1 (MQ=60)
CGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAG < SRR4302541.4200079/94‑1 (MQ=60)
CGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAG > SRR4302541.4194859/1‑94 (MQ=60)
CGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAG > SRR4302541.310093/1‑94 (MQ=60)
CGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAG > SRR4302541.7717363/1‑94 (MQ=60)
CGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAG < SRR4302541.6171708/94‑1 (MQ=60)
CGATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAG > SRR4302541.1346758/1‑94 (MQ=60)
GATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGT > SRR4302541.1663032/1‑94 (MQ=60)
GATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGT > SRR4302541.5573521/1‑94 (MQ=60)
GATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGT > SRR4302541.986094/1‑94 (MQ=60)
GATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGA > SRR4302541.4421726/1‑94 (MQ=60)
ATCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTA > SRR4302541.5487466/1‑94 (MQ=60)
TCTGCGTGTCGAGCCACTGAGCAAATCCCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTAC < SRR4302541.8551436/94‑1 (MQ=60)
TCTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTAC < SRR4302541.1565198/94‑1 (MQ=60)
TCGGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTAC < SRR4302541.6193163/94‑1 (MQ=60)
CTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACA < SRR4302541.5840593/94‑1 (MQ=60)
CTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACA < SRR4302541.5700761/94‑1 (MQ=60)
CTGCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACA > SRR4302541.3103618/1‑94 (MQ=60)
GCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACG < SRR4302541.3484551/94‑1 (MQ=60)
GCGTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACG < SRR4302541.8697024/94‑1 (MQ=60)
GTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTT > SRR4302541.6606162/1‑94 (MQ=60)
GTGTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTT > SRR4302541.1296490/1‑94 (MQ=60)
GTCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTT > SRR4302541.5174106/1‑94 (MQ=60)
TCGAGCCACTGAGCAAATACCATCTTGATTATATTTCCATGCTCCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTT < SRR4302541.2125764/94‑1 (MQ=60)
TCGAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTT < SRR4302541.5070610/94‑1 (MQ=60)
GAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGC < SRR4302541.3335367/94‑1 (MQ=60)
GAGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGC > SRR4302541.711889/1‑94 (MQ=60)
AGCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCA > SRR4302541.6697159/1‑94 (MQ=60)
GCCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAG < SRR4302541.2458078/94‑1 (MQ=60)
CCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGC > SRR4302541.1181489/1‑94 (MQ=60)
CCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGC > SRR4302541.3897930/1‑94 (MQ=60)
CCACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGC > SRR4302541.4875141/1‑94 (MQ=60)
CACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCG > SRR4302541.8735785/1‑94 (MQ=60)
CCTGAGCAAATACCATCTTTATGATATTTCCACGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGT < SRR4302541.2553427/94‑1 (MQ=60)
ACTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGT < SRR4302541.6186894/94‑1 (MQ=60)
CTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTA > SRR4302541.283943/1‑94 (MQ=60)
CTGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTA > SRR4302541.7301423/1‑94 (MQ=60)
TGAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTAT < SRR4302541.2230208/94‑1 (MQ=60)
GAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATC < SRR4302541.6975539/94‑1 (MQ=60)
GAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATC < SRR4302541.3366426/94‑1 (MQ=60)
GAGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATC < SRR4302541.3551894/94‑1 (MQ=60)
AGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCC < SRR4302541.8327311/94‑1 (MQ=60)
AGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCC > SRR4302541.406763/1‑94 (MQ=60)
AGCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCC < SRR4302541.570032/94‑1 (MQ=60)
GCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCCC < SRR4302541.2492620/94‑1 (MQ=60)
GCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCCC < SRR4302541.6957641/94‑1 (MQ=60)
GCAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCCC < SRR4302541.2831559/94‑1 (MQ=60)
CAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCCCG < SRR4302541.8331525/94‑1 (MQ=60)
CAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCCCG < SRR4302541.7266630/94‑1 (MQ=60)
CAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCCCG < SRR4302541.6958614/94‑1 (MQ=60)
CAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCCCG > SRR4302541.2563055/1‑94 (MQ=60)
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CGAATTGCGTGAGATCCCCCCACACGACTGGGGTAAAACTCTGAAAGAGATGGATTTAAATCTCTCTTTCGATCTGCGTGTCGAGCCACTGAGTAAATACCATCTTGATGATATTTCCATGCACCGACTGCGTGGCGGCGAAATTGTCGCCCTGGACGATCAGTACACGTTTTTGCAGCGTATCCCG > NC_000913/1681061‑1681247
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
