Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,683,566 |
(C)6→7 |
coding (1047/1404 nt) |
fumC ← |
fumarase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,683,560 | 1 | . | C | 97.4%
| 639.4
/ 8.0
| 193 | coding (1053/1404 nt) | fumC | fumarase C |
| Reads supporting (aligned to +/- strand): ref base . (4/1); new base C (95/93); total (99/94) |
| Fisher's exact test for biased strand distribution p-value = 3.69e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 230 total aligned reads displayed.
TTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCC > NC_000913/1683469‑1683647
|
tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c > 2:554716/1‑93 (MQ=255)
tttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c > 2:2173892/1‑93 (MQ=255)
ttcccATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGTAAGACGTTCAGTTCAAAGTTACCGGAAgcg‑c < 1:2588959/90‑1 (MQ=255)
ttCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c < 1:826452/93‑1 (MQ=255)
ccATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑cc < 1:4880374/93‑1 (MQ=255)
cATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑ccc < 1:1343429/93‑1 (MQ=255)
cATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑ccc > 1:5340915/1‑93 (MQ=255)
aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑cccc > 2:5028658/1‑93 (MQ=255)
aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑cccc > 1:3641328/1‑93 (MQ=255)
aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑cccc > 1:6359782/1‑93 (MQ=255)
aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑cccc > 1:921576/1‑93 (MQ=255)
aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑cccc > 2:3248907/1‑93 (MQ=255)
aTGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑cccc > 1:1229619/1‑93 (MQ=255)
tGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑c‑c‑ccccc > 1:1053338/1‑92 (MQ=255)
tCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGtt > 2:1405986/1‑93 (MQ=255)
tCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑CACCCCATGtt > 1:6389547/1‑93 (MQ=255)
cTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTg < 2:3104999/93‑1 (MQ=255)
gCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGAt < 1:473561/93‑1 (MQ=255)
gCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGAt < 1:5696853/93‑1 (MQ=255)
gCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGAt > 2:5805181/1‑93 (MQ=255)
ccAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATc > 2:840473/1‑93 (MQ=255)
ccAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATc < 2:2736767/93‑1 (MQ=255)
cAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCg > 2:6052198/1‑93 (MQ=255)
gCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGcc < 2:4228993/93‑1 (MQ=255)
gCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGcc > 1:2808859/1‑93 (MQ=255)
gCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGcc < 2:2233528/93‑1 (MQ=255)
gCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGcc > 1:1881912/1‑93 (MQ=255)
aGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCAcg > 1:3510777/1‑93 (MQ=255)
gcgcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCAcgt < 2:661157/93‑1 (MQ=255)
cgcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCAcgtc < 2:4181238/93‑1 (MQ=255)
cgcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCAcgtc < 2:5903100/93‑1 (MQ=255)
gcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCAcgtcg > 2:2710194/1‑93 (MQ=255)
gcACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAAACGTTCAGTTCAAAGTTACCGGAAGCG‑CGC‑CCCCATGTTGATCGCCAcgtcg > 1:5249863/1‑93 (MQ=255)
cACCGATTGCTGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCAcgtcgt > 1:194312/1‑93 (MQ=255)
cACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑CACCCCATGTTGATAGCTAcgtcgt > 1:3751061/1‑93 (MQ=255)
aCCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGtt > 1:665459/1‑93 (MQ=255)
gATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTccc < 2:6195813/93‑1 (MQ=255)
ttGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCa > 2:3387584/1‑93 (MQ=255)
aGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCAc < 2:2508201/93‑1 (MQ=255)
aGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCAc > 1:3197871/1‑93 (MQ=255)
aGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCAc > 1:2971656/1‑93 (MQ=255)
gAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCt > 2:3036886/1‑93 (MQ=255)
gAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCt < 1:2369943/93‑1 (MQ=255)
aaaTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTg > 2:2927445/1‑93 (MQ=255)
aaaTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTg < 2:120539/93‑1 (MQ=255)
aaaTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTg > 2:3454853/1‑93 (MQ=255)
aTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAc < 2:2389244/93‑1 (MQ=255)
aTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAc < 2:3793212/93‑1 (MQ=255)
aTTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAc > 1:1538463/1‑93 (MQ=255)
aTTGTGGATCACCAGTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAc < 2:790371/93‑1 (MQ=255)
tgGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagca < 1:1161315/93‑1 (MQ=255)
ggATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGAcagcag < 2:4575450/93‑1 (MQ=255)
gATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTCCCGGACCCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCaga < 1:2522780/93‑1 (MQ=255)
gATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCaga > 1:2722870/1‑93 (MQ=255)
ttCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCCCCTGACAGCagag < 1:4506223/92‑1 (MQ=255)
cACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa < 2:5250060/93‑1 (MQ=255)
cACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCa > 2:3346588/1‑93 (MQ=255)
aCCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCAt > 2:2532833/1‑93 (MQ=255)
ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATg > 2:3947229/1‑93 (MQ=255)
ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATg > 1:2029213/1‑93 (MQ=255)
ccATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATg < 2:6344575/93‑1 (MQ=255)
cATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACCGCAGAGCATgg > 1:4442414/1‑93 (MQ=255)
cATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATgg < 1:397692/93‑1 (MQ=255)
cATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATgg > 1:4284966/1‑93 (MQ=255)
aTTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGt < 2:5238431/93‑1 (MQ=255)
ttGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGtt < 1:5813557/93‑1 (MQ=255)
tGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTa < 1:3582129/93‑1 (MQ=255)
ggACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTaa < 1:4514061/93‑1 (MQ=255)
ggACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTaa < 2:4351069/93‑1 (MQ=255)
gACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCGTCACCTGACAGCAGAGCATGGTTAAt > 2:3970563/1‑93 (MQ=255)
gACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAt > 2:897346/1‑93 (MQ=255)
gACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAt < 2:4865428/93‑1 (MQ=255)
gACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAt < 1:4102841/93‑1 (MQ=255)
ggAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc > 2:4095276/1‑93 (MQ=255)
ggAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGcc > 2:5008316/1‑93 (MQ=255)
gAAGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCt < 2:1725424/93‑1 (MQ=255)
aaGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTc > 2:137642/1‑93 (MQ=255)
aaGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTc < 1:80621/93‑1 (MQ=255)
aGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTca > 1:3091886/1‑93 (MQ=255)
aGACGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTca > 2:5619903/1‑93 (MQ=255)
cGTTCAGTTCAAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCacac < 1:6216369/93‑1 (MQ=255)
gttcagttcaAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACt > 2:153393/1‑93 (MQ=255)
gttcagttcaAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACt > 2:5445136/1‑93 (MQ=255)
ttcagttcaAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACtg < 1:5084411/93‑1 (MQ=255)
tcagttcaAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGACTCACACtgt > 2:3768408/1‑93 (MQ=255)
ttcaAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTg > 2:5113919/1‑93 (MQ=255)
ttcaAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTg < 1:2209788/93‑1 (MQ=255)
tcaAAGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTgg > 1:5965763/1‑93 (MQ=255)
aaaGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGt < 2:1228129/93‑1 (MQ=255)
aaaGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGt > 1:5166684/1‑93 (MQ=255)
aaGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGtt < 2:2591279/93‑1 (MQ=255)
aGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTc > 2:1074718/1‑93 (MQ=255)
aGTTACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTc > 2:2077639/1‑93 (MQ=255)
ttACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCAc < 1:1192247/93‑1 (MQ=255)
tACCGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACt > 1:5924553/1‑93 (MQ=255)
ccGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACttt > 2:4669047/1‑93 (MQ=255)
cGGAAGCTCC‑C‑CCCCATGTTGATCGCCACCTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTc < 1:1779859/93‑1 (MQ=255)
cGGAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTc > 2:5302329/1‑93 (MQ=255)
ggAAGCGCC‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTcc < 2:5710159/93‑1 (MQ=255)
gAAGCG‑C‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTcccc > 1:3791973/1‑93 (MQ=255)
|
TTTCCATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGCG‑C‑C‑CCCCATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCC > NC_000913/1683469‑1683647
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAG > NC_000913/1683473‑1683659
|
CATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑C > SRR4302534.3739192/1‑94 (MQ=60)
CATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑C > SRR4302534.945048/1‑94 (MQ=60)
CATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑C > SRR4302534.6531534/1‑94 (MQ=60)
CATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑C > SRR4302534.3722662/1‑94 (MQ=60)
CATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑C < SRR4302534.1378856/94‑1 (MQ=60)
CATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑C > SRR4302534.1261991/1‑94 (MQ=60)
ATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑CC > SRR4302534.1080604/1‑94 (MQ=60)
ATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑CC < SRR4302534.4433799/94‑1 (MQ=60)
TGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑Cca > SRR4302534.3972945/1‑92 (MQ=60)
GCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑Ccat < SRR4302534.3095311/94‑4 (MQ=60)
CCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATG > SRR4302534.1210533/1‑94 (MQ=60)
CATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑CATGTT > SRR4302534.1420762/1‑94 (MQ=60)
ATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTT > SRR4302534.828325/1‑94 (MQ=60)
ATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑CACCC‑CATGTT > SRR4302534.6562127/1‑94 (MQ=60)
GCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATC < SRR4302534.850344/94‑1 (MQ=60)
GCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATC < SRR4302534.485474/94‑1 (MQ=60)
GCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATC < SRR4302534.2012731/94‑1 (MQ=60)
GCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATC < SRR4302534.5851178/94‑1 (MQ=60)
TAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGC > SRR4302534.626175/1‑94 (MQ=60)
AGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCC > SRR4302534.4595374/1‑94 (MQ=60)
AGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCC > SRR4302534.2882722/1‑94 (MQ=60)
AGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCC > SRR4302534.4823754/1‑94 (MQ=60)
AGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCC > SRR4302534.1930941/1‑94 (MQ=60)
AAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACG > SRR4302534.3605224/1‑94 (MQ=60)
AAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACG < SRR4302534.3384779/94‑1 (MQ=60)
GCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTC < SRR4302534.5460598/94‑1 (MQ=60)
GCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTC < SRR4302534.4017052/94‑1 (MQ=60)
CGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCG > SRR4302534.4534262/1‑94 (MQ=60)
CGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCG < SRR4302534.1363579/94‑1 (MQ=60)
CGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAAACGTTCAGTTCAAAGTTACCGGAAGC‑G‑CGC‑CCC‑CATGTTGATCGCCACGTCG > SRR4302534.5391684/1‑94 (MQ=60)
GCACCGATTGCTGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGT > SRR4302534.199402/1‑94 (MQ=60)
GCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑CACCC‑CATGTTGATAGCTACGTCGT > SRR4302534.3851799/1‑94 (MQ=60)
CACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTT < SRR4302534.699193/94‑1 (MQ=60)
CACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTT > SRR4302534.681660/1‑94 (MQ=60)
ACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGGTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTC > SRR4302534.3746161/1‑94 (MQ=60)
ATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCA < SRR4302534.5326080/94‑1 (MQ=60)
TGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATC < SRR4302534.3085259/94‑1 (MQ=60)
CAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCAC > SRR4302534.3282648/1‑94 (MQ=60)
CAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCAC > SRR4302534.3049460/1‑94 (MQ=60)
GGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCT < SRR4302534.519397/94‑1 (MQ=60)
GGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCT > SRR4302534.665134/1‑94 (MQ=60)
GAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTG < SRR4302534.2432861/94‑1 (MQ=60)
AATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGAC > SRR4302534.1578800/1‑94 (MQ=60)
ATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACA < SRR4302534.685137/94‑1 (MQ=60)
ATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACA < SRR4302534.3205631/94‑1 (MQ=60)
ATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACA > SRR4302534.1905806/1‑94 (MQ=60)
TGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAG < SRR4302534.1191792/94‑1 (MQ=60)
GGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGA > SRR4302534.2794717/1‑94 (MQ=60)
GGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGA < SRR4302534.4919462/94‑1 (MQ=60)
GATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTCCCGGACCC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAG < SRR4302534.2589737/94‑1 (MQ=60)
GAACACCATTGGACGGAAGACGTTCAGTTCGAAGTTACCTGAAGC‑GCC‑C‑CCC‑CTTTTTTATCGTCACGTCGTTCCCCATCACCTATCAGCAGAG < SRR4302534.3286740/94‑1 (MQ=40)
TTCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCCCCTGACAGCAGAGC < SRR4302534.4628241/94‑1 (MQ=60)
CACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCAT < SRR4302534.4801760/94‑1 (MQ=60)
ACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATG > SRR4302534.1884326/1‑94 (MQ=60)
ACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATG > SRR4302534.2082279/1‑94 (MQ=60)
CCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACCGCAGAGCATGG > SRR4302534.4562420/1‑94 (MQ=60)
CCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGG > SRR4302534.4401020/1‑94 (MQ=60)
CATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGT < SRR4302534.407864/94‑1 (MQ=60)
ATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTT < SRR4302534.1244635/94‑1 (MQ=60)
TTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTA < SRR4302534.5971341/94‑1 (MQ=60)
TTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTA < SRR4302534.2863733/94‑1 (MQ=60)
TGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAA < SRR4302534.3678484/94‑1 (MQ=60)
GGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAT < SRR4302534.4636331/94‑1 (MQ=60)
GGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAAT < SRR4302534.1941310/94‑1 (MQ=60)
GACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATG > SRR4302534.4305123/1‑94 (MQ=60)
GACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATG < SRR4302534.4213169/94‑1 (MQ=60)
ACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGC > SRR4302534.165272/1‑94 (MQ=60)
CGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCC < SRR4302534.2232769/94‑1 (MQ=60)
CGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCC > SRR4302534.5873799/1‑94 (MQ=60)
CGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCC > SRR4302534.2243637/1‑94 (MQ=60)
CGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCC > SRR4302534.6552410/1‑94 (MQ=60)
CAGAAGACGTTCAGTTCTAAGTTACCGGATGC‑G‑C‑C‑ACA‑CATGTTGATCGCCACGTCGGTCCCCATCACCTGACAGCAGAGCATGATTAATGCCT < SRR4302534.545018/94‑1 (MQ=60)
GGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCT > SRR4302534.2782739/1‑94 (MQ=60)
GGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCT < SRR4302534.4630489/94‑1 (MQ=60)
AAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCA > SRR4302534.3173204/1‑94 (MQ=60)
AAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCA > SRR4302534.6089603/1‑94 (MQ=60)
AAGACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCA < SRR4302534.82789/94‑1 (MQ=60)
GACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACA > SRR4302534.5675314/1‑94 (MQ=60)
GACGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACA > SRR4302534.4179916/1‑94 (MQ=60)
CGTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACT < SRR4302534.6385261/94‑1 (MQ=60)
GTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTG > SRR4302534.3610421/1‑94 (MQ=60)
GTTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTG < SRR4302534.5338093/94‑1 (MQ=60)
TTCAGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGT < SRR4302534.5221648/94‑1 (MQ=60)
AGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTT < SRR4302534.3628546/94‑1 (MQ=60)
AGTTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTT < SRR4302534.5862541/94‑1 (MQ=60)
TTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGG < SRR4302534.2268295/94‑1 (MQ=60)
TTCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGG > SRR4302534.6127767/1‑94 (MQ=60)
TCAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTAGGTACCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGG > SRR4302534.1278430/1‑94 (MQ=60)
CAAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGT > SRR4302534.5305948/1‑94 (MQ=60)
AAAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTT < SRR4302534.3864670/94‑1 (MQ=60)
AAGTTACCGGAAGC‑GCC‑C‑CCC‑CATGCTGATCGCCACGTCGGTCCCCATCACCTGACAGCAGCGCATGGTTAAagccctgcactgtgctgggtcc > SRR4302534.2792602/1‑72 (MQ=60)
AGTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCA < SRR4302534.2614052/94‑1 (MQ=60)
GTTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCAC < SRR4302534.6208381/94‑1 (MQ=60)
TTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACT > SRR4302534.6085422/1‑94 (MQ=60)
TTACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACT < SRR4302534.1223594/94‑1 (MQ=60)
ACCGGACGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTT < SRR4302534.1174202/94‑1 (MQ=60)
ACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCTCTTT > SRR4302534.2300346/1‑94 (MQ=60)
ACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTT < SRR4302534.5280563/94‑1 (MQ=60)
ACCGGAAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGCCGTTCCCCATCACCTGATGGCAGAGCATGGTTAATGCAACACACTGTGTCGGGTTCCCTTT > SRR4302534.3216937/1‑94 (MQ=57)
CGGAAGCTC‑C‑C‑CCC‑CATGTTGATCGCCACCTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCC < SRR4302534.1826077/94‑1 (MQ=60)
GGAAGC‑G‑C‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCC > SRR4302534.3893774/1‑94 (MQ=60)
AAGC‑GCC‑C‑CCC‑CATGTTGATCGCTACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCG < SRR4302534.5991661/94‑1 (MQ=60)
AAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCG > SRR4302534.4631100/1‑94 (MQ=60)
AAGC‑GCC‑C‑CCC‑CATGTTGATCGCCACCTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCG > SRR4302534.2971325/1‑94 (MQ=60)
AGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGG > SRR4302534.3462909/1‑94 (MQ=60)
AGC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGG < SRR4302534.616539/94‑1 (MQ=60)
GC‑GCC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGC > SRR4302534.1632772/1‑94 (MQ=60)
AC‑G‑C‑C‑CCCTCATGTTGATCGCCACGTCTTTCCCCATCTCCTGACAGCAGAGCATGGTTAATGCTTCACACTGTGTTGGGTCCGCTTTCCCCGGC < SRR4302534.2162119/94‑1 (MQ=60)
gcC‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCAT < SRR4302534.5537363/92‑1 (MQ=60)
C‑C‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATG < SRR4302534.2968324/94‑1 (MQ=60)
C‑C‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATG > SRR4302534.1963218/1‑94 (MQ=60)
C‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGA > SRR4302534.1280553/1‑94 (MQ=60)
C‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGA < SRR4302534.4024671/94‑1 (MQ=60)
C‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGA > SRR4302534.3079578/1‑94 (MQ=60)
C‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGA < SRR4302534.3817899/94‑1 (MQ=60)
C‑C‑CCC‑CATGTTGAGCGGCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGA < SRR4302534.1935669/94‑1 (MQ=60)
C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGAT < SRR4302534.6354770/94‑1 (MQ=60)
C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCAACTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGAT > SRR4302534.1198166/1‑94 (MQ=60)
CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTTTTGGGTTCACTTTCCCCGGCATGATT < SRR4302534.4384423/94‑1 (MQ=60)
CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATT < SRR4302534.3335418/94‑1 (MQ=60)
CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTG < SRR4302534.1212130/94‑1 (MQ=60)
CC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTG > SRR4302534.5878337/1‑94 (MQ=60)
C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGA < SRR4302534.1358709/94‑1 (MQ=60)
C‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGA > SRR4302534.2364149/1‑94 (MQ=60)
CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAG > SRR4302534.1481478/1‑94 (MQ=60)
CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAG < SRR4302534.2056340/94‑1 (MQ=60)
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CATGCCATCTGCCAGCAAGCGCACCGATTGCAGGAAATTGTGGATCACCATTGGACGGAAGACGTTCAGTTCAAAGTTACCGGAAGC‑G‑C‑C‑CCC‑CATGTTGATCGCCACGTCGTTCCCCATCACCTGACAGCAGAGCATGGTTAATGCCTCACACTGTGTTGGGTTCACTTTCCCCGGCATGATTGAG > NC_000913/1683473‑1683659
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
