Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I1 R1 744 338.8 17650688 97.8% 17262372 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,705,052 T→C V37A (GTA→GCA)  b1629 → putative membrane protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,705,0520TC100.0% 662.2 / NA 204V37A (GTA→GCA) b1629putative membrane protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (55/149);  total (55/149)

Only 100 of 246 total aligned reads displayed.

CATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGC  >  NC_000913/1704962‑1705141
                                                                                          |                                                                                          
cATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGCAc                                                                                          >  1:8087536/1‑93 (MQ=255)
cATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCAc                                                                                          <  2:5678376/93‑1 (MQ=255)
  ttCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCTGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCAccc                                                                                        >  1:6121843/1‑93 (MQ=255)
  ttCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGGCACGCAccc                                                                                        >  1:3180741/1‑93 (MQ=255)
   tCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCAcccc                                                                                       <  2:698213/93‑1 (MQ=255)
   tCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCAcccc                                                                                       <  2:2616038/93‑1 (MQ=255)
   tCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCGGCGCCAGGCAcccc                                                                                       <  2:5793336/93‑1 (MQ=255)
    cAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCt                                                                                      <  1:4729720/93‑1 (MQ=255)
     aGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTg                                                                                     >  2:4638407/1‑93 (MQ=255)
      gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTgg                                                                                    <  2:2112455/93‑1 (MQ=255)
      gAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTgg                                                                                    >  1:7410001/1‑93 (MQ=255)
      aaaaaaaTAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAGCCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTgg                                                                                    <  1:5077936/92‑1 (MQ=255)
         aaaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGAACCCTGgcgc                                                                                 >  1:5369295/1‑93 (MQ=255)
          aaataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCa                                                                                <  2:1767254/93‑1 (MQ=255)
           aataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGCACCCCCGGCCCac                                                                               >  1:6405489/1‑92 (MQ=255)
           aataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAg                                                                               <  1:2582780/93‑1 (MQ=255)
            ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGGCAGGCACCCCTGGGGCAGc                                                                              >  1:4176661/1‑93 (MQ=255)
            ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGc                                                                              <  2:2455935/93‑1 (MQ=255)
            ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGc                                                                              <  1:5572774/93‑1 (MQ=255)
            ataaaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCAACCCCCGCGCAGc                                                                              >  1:3475961/1‑93 (MQ=255)
               aaatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑tt                                                                          <  2:5908776/93‑1 (MQ=255)
                aatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑ttt                                                                         >  1:3041492/1‑93 (MQ=255)
                aatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑ttt                                                                         <  2:4353503/93‑1 (MQ=255)
                aatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑ttt                                                                         <  2:3243460/93‑1 (MQ=255)
                aatCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑ttt                                                                         <  1:4090706/93‑1 (MQ=255)
                 atCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑tttt                                                                        >  1:6083290/1‑93 (MQ=255)
                  tCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTCGGGCCCGCACCCCCCGCGCCGCG‑TTTTg                                                                       >  1:3311585/1‑93 (MQ=255)
                      ggATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTAt                                                                   <  1:4428697/93‑1 (MQ=255)
                      ggATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTAt                                                                   <  1:6744060/93‑1 (MQ=255)
                         tttCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTcc                                                                >  1:1012949/1‑93 (MQ=255)
                         tttCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCACGCACCCCCCGCGCAGCGCGTTTGTTTTTc                                                                 >  2:180599/1‑93 (MQ=255)
                           tCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGGCCCCCCCGCGCCGCG‑GTTTTTTTTTTCat                                                              >  2:7733411/1‑92 (MQ=255)
                           tCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCAc                                                              <  1:495040/93‑1 (MQ=255)
                            cAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACt                                                             <  1:25329/93‑1 (MQ=255)
                               cggcggCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGGCAGGCACCCCTGGCGCCGCG‑GTTTGTTATTCCCCTTaa                                                          >  2:1139430/1‑93 (MQ=255)
                               cggcggCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCCGGCGCCGCG‑GTTTGTTTTTCCACTgga                                                          >  2:2450230/1‑91 (MQ=255)
                                ggcggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGaaa                                                         >  1:1289340/1‑93 (MQ=255)
                                 gcggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCCCCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAAc                                                        <  2:8328152/93‑1 (MQ=255)
                                 gcggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAAc                                                        <  1:933845/93‑1 (MQ=255)
                                 gcggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACCGaaaa                                                        >  2:2769030/1‑92 (MQ=255)
                                 gcggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑GTTTGTTATTCCACTGAAAc                                                        >  2:1389506/1‑93 (MQ=255)
                                  cggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACa                                                       <  1:4309355/93‑1 (MQ=255)
                                  cggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACa                                                       <  2:3663969/93‑1 (MQ=255)
                                  cggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACa                                                       <  1:8283021/93‑1 (MQ=255)
                                   ggcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAg                                                      >  1:1479726/1‑93 (MQ=255)
                                    gcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGCACCCCTGGCGCAGCG‑CTTTGTTTTTCCACTGCAACCGc                                                     >  1:6912788/1‑93 (MQ=255)
                                    gcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGc                                                     <  1:1108149/93‑1 (MQ=255)
                                    gcATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCAGGCGCAGCG‑TTTTGTTATTTCACTGAAACAga                                                     >  2:5296487/1‑92 (MQ=255)
                                      atccatccACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCat                                                   <  1:1789256/93‑1 (MQ=255)
                                       tccatccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCata                                                  <  1:3913636/93‑1 (MQ=255)
                                       tccatccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCata                                                  <  1:2084020/93‑1 (MQ=255)
                                         catccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATAtt                                                <  2:6665781/93‑1 (MQ=255)
                                         catccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATAtt                                                <  2:6251101/93‑1 (MQ=255)
                                          atccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTg                                               <  1:1218464/93‑1 (MQ=255)
                                           tccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTgg                                              <  2:3965671/93‑1 (MQ=255)
                                           gccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTgg                                              <  2:6996747/92‑1 (MQ=255)
                                            ccaCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCCGGCGCAGCG‑GTTTGTTATTTCACTGAAACAGCATATTGgc                                             >  2:3735956/1‑93 (MQ=255)
                                              cccGGAGATGAAAACCCAGTCCATCGGTACACCCCTGCGCCAGGCACCCCTGGCGAAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGgcgc                                           <  2:4764564/92‑1 (MQ=255)
                                              aCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGTCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGgcgc                                           <  2:1033802/93‑1 (MQ=255)
                                               ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGGCAGGCACCCCCGGCGCAGCG‑GTTTGTTATTTCACTTAAAAAGCATATTGGCGCt                                          >  2:5474418/1‑93 (MQ=255)
                                               ccGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCt                                          <  2:6784116/93‑1 (MQ=255)
                                                       gAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGa                                  <  2:3773037/93‑1 (MQ=255)
                                                       gAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGa                                  <  1:6785260/93‑1 (MQ=255)
                                                       gAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGa                                  <  1:3651377/93‑1 (MQ=255)
                                                          aaCCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGtt                               >  2:7548985/1‑93 (MQ=255)
                                                            cccAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgt                             <  2:1582756/93‑1 (MQ=255)
                                                             ccAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                            >  2:4446445/1‑93 (MQ=255)
                                                             ccAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTtgtg                            >  2:6076486/1‑93 (MQ=255)
                                                             ccAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTCGCGCTGAAGGTGAGTtgtg                            <  1:8533937/93‑1 (MQ=255)
                                                              cAGTCCAACGGTACCCCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGc                           <  2:4038650/93‑1 (MQ=255)
                                                                 tCCAACGGTACACCCCTGCGGCAGGCACCCCTGGGGCAGCG‑GTTTGTTATTTCACTGAAACAGCATATTGGCGGTGAAGGTGAGGTGTGCggt                        >  2:5229871/1‑91 (MQ=255)
                                                                   cAACGGTACACCCCTGCGCCCGGCACCCCTGGCGCAGCG‑TTTTGTTATTTCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAg                      >  1:7250843/1‑93 (MQ=255)
                                                                   cAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAg                      <  1:3142245/93‑1 (MQ=255)
                                                                   cAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAg                      <  1:1645283/93‑1 (MQ=255)
                                                                      cGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGt                   <  2:3573874/93‑1 (MQ=255)
                                                                       ggTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTc                  <  1:144364/93‑1 (MQ=255)
                                                                       ggTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTc                  <  1:3527228/93‑1 (MQ=255)
                                                                       ggTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTc                  <  1:6348796/93‑1 (MQ=255)
                                                                       cgTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTc                  <  1:7045829/92‑1 (MQ=255)
                                                                           cacCCCTGCGCCAGGCACCCCTGGCGCAGCG‑CTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGGTGTGCGTTAGCGTCGGCg              >  1:282580/1‑93 (MQ=255)
                                                                            acCCCTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCGCTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGa             <  2:820931/93‑1 (MQ=255)
                                                                             cgccTGCCCCAGGCTCCCCTGCCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGAt            <  1:2776320/91‑1 (MQ=255)
                                                                             ccccTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGAt            <  2:7514459/93‑1 (MQ=255)
                                                                             ccccTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGAt            >  1:7771326/1‑93 (MQ=255)
                                                                              cccTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATa           <  2:8015760/93‑1 (MQ=255)
                                                                               ccTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaa          <  1:6181269/93‑1 (MQ=255)
                                                                               ccTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaa          <  2:719659/93‑1 (MQ=255)
                                                                                cTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaaa         <  2:429523/93‑1 (MQ=255)
                                                                                cTGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATaaa         >  2:7413767/1‑93 (MQ=255)
                                                                                 tGCGCCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAg        >  2:8544948/1‑93 (MQ=255)
                                                                                  gcgcCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGt       <  1:3986636/93‑1 (MQ=255)
                                                                                   ggcCAGGCCCCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTa      <  2:6429176/92‑1 (MQ=255)
                                                                                    gcCAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAt     <  1:4703449/93‑1 (MQ=255)
                                                                                     ccAGGCACCCCTGGCTCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAtt    <  1:1486153/93‑1 (MQ=255)
                                                                                     ccAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAATCAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAtt    <  1:8813927/93‑1 (MQ=255)
                                                                                     ccAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTAtt    <  1:2369351/93‑1 (MQ=255)
                                                                                      cAGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTg   <  2:255737/93‑1 (MQ=255)
                                                                                       aGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgc  >  2:8627116/1‑93 (MQ=255)
                                                                                       aGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgc  <  1:8737358/93‑1 (MQ=255)
                                                                                       aGGCACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTgc  <  1:4274414/93‑1 (MQ=255)
                                                                                          |                                                                                          
CATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCG‑TTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGC  >  NC_000913/1704962‑1705141

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGG  >  NC_000913/1704959‑1705145
                                                                                             |                                                                                             
CTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGCTGAGAACCCAGTTCCACGGTACACCCCTGCGCCAGGG                                                                                               >  SRR4302541.4986673/1‑94 (MQ=60)
CTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGC                                                                                               <  SRR4302541.934051/94‑1 (MQ=60)
CTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGC                                                                                               >  SRR4302541.8752358/1‑94 (MQ=60)
CTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGC                                                                                               >  SRR4302541.4961895/1‑94 (MQ=60)
CTGCATTCAGAAAAAATAAAATCTGGGATGTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGC                                                                                               <  SRR4302541.168458/94‑1 (MQ=60)
 TGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCA                                                                                              <  SRR4302541.8701717/94‑1 (MQ=60)
 TGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCA                                                                                              >  SRR4302541.5286737/1‑94 (MQ=60)
 TGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCA                                                                                              <  SRR4302541.6604276/94‑1 (MQ=60)
  GCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCGCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCAC                                                                                             <  SRR4302541.1900721/94‑1 (MQ=60)
  GCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTATACCCCTGCGCCAGGCAC                                                                                             <  SRR4302541.7481964/94‑1 (MQ=60)
  GCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGCAC                                                                                             >  SRR4302541.8176203/1‑94 (MQ=60)
    ATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCTGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCC                                                                                           >  SRR4302541.6184370/1‑94 (MQ=60)
    ATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGCACCC                                                                                           >  SRR4302541.2505116/1‑94 (MQ=60)
     TTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCC                                                                                          >  SRR4302541.7150647/1‑94 (MQ=60)
      TCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCT                                                                                         <  SRR4302541.889722/94‑1 (MQ=60)
       CAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTG                                                                                        <  SRR4302541.4777984/94‑1 (MQ=60)
       CAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTG                                                                                        <  SRR4302541.7999362/94‑1 (MQ=60)
        AGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGG                                                                                       >  SRR4302541.7489255/1‑94 (MQ=60)
         GAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCCGGC                                                                                      >  SRR4302541.3703991/1‑94 (MQ=60)
         AAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAGCCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGC                                                                                      <  SRR4302541.5130110/94‑1 (MQ=60)
           AAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGAACCCTGGCGC                                                                                    >  SRR4302541.5424417/1‑94 (MQ=60)
             AAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAG                                                                                  >  SRR4302541.7697922/1‑94 (MQ=60)
             AAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAG                                                                                  >  SRR4302541.2586061/1‑94 (MQ=60)
              AATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGGCAGGCACCCCTGGGGCAGC                                                                                 >  SRR4302541.4218090/1‑94 (MQ=60)
              AATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGC                                                                                 <  SRR4302541.2608664/94‑1 (MQ=60)
              AATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGC                                                                                 >  SRR4302541.2718240/1‑94 (MQ=60)
               ATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG                                                                                <  SRR4302541.5629824/94‑1 (MQ=60)
               ATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCG                                                                                <  SRR4302541.1558699/94‑1 (MQ=60)
                 AAAATCTGGGATTTCAACGGCGGCATCCATCCGCCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTT                                                                              <  SRR4302541.6467152/94‑1 (MQ=60)
                 AAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTT                                                                              <  SRR4302541.3620434/94‑1 (MQ=60)
                  AAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTT                                                                             >  SRR4302541.3072230/1‑94 (MQ=60)
                  AAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTT                                                                             <  SRR4302541.3191558/94‑1 (MQ=60)
                   AATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTT                                                                            >  SRR4302541.6145384/1‑94 (MQ=60)
                   AATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTT                                                                            <  SRR4302541.4131094/94‑1 (MQ=60)
                   AATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGGTTT                                                                            >  SRR4302541.5379777/1‑94 (MQ=60)
                    ATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTG                                                                           <  SRR4302541.6190654/94‑1 (MQ=60)
                       TGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGCACCCCTGGCGCAGCGTTTTtttt                                                                        >  SRR4302541.233065/1‑90 (MQ=60)
                       TGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCCGCGGTTTGTTT                                                                        >  SRR4302541.587935/1‑94 (MQ=60)
                        GGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTAT                                                                       <  SRR4302541.4758462/94‑1 (MQ=60)
                         GGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATT                                                                      <  SRR4302541.6816113/94‑1 (MQ=60)
                         GGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATT                                                                      <  SRR4302541.4473189/94‑1 (MQ=60)
                           ATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCC                                                                    >  SRR4302541.1022322/1‑94 (MQ=60)
                           ATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCC                                                                    >  SRR4302541.4192180/1‑94 (MQ=60)
                              TCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACT                                                                 <  SRR4302541.499708/94‑1 (MQ=60)
                              TCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACT                                                                 >  SRR4302541.1106172/1‑94 (MQ=60)
                              TCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACT                                                                 <  SRR4302541.354099/94‑1 (MQ=60)
                               CAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTG                                                                <  SRR4302541.25531/94‑1 (MQ=60)
                               CAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTG                                                                <  SRR4302541.8186500/94‑1 (MQ=60)
                               CAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTG                                                                >  SRR4302541.4538913/1‑94 (MQ=60)
                                AACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCcggggcaggggttttgttttcctctca                                                               >  SRR4302541.5785877/1‑67 (MQ=60)
                                AACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGGGTTTTGTTATTCCACTGA                                                               >  SRR4302541.2872810/1‑94 (MQ=60)
                                  CGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAA                                                             >  SRR4302541.7384547/1‑94 (MQ=60)
                                  CGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAA                                                             >  SRR4302541.1302090/1‑94 (MQ=60)
                                   GGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAAC                                                            <  SRR4302541.6764077/94‑1 (MQ=60)
                                   GGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGCCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAAC                                                            <  SRR4302541.1438229/94‑1 (MQ=60)
                                    GCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACA                                                           <  SRR4302541.942678/94‑1 (MQ=60)
                                    GCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACA                                                           <  SRR4302541.942677/94‑1 (MQ=60)
                                     CGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAG                                                          >  SRR4302541.1494258/1‑94 (MQ=60)
                                     CGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAG                                                          <  SRR4302541.6972202/94‑1 (MQ=60)
                                     CGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAG                                                          <  SRR4302541.4352389/94‑1 (MQ=60)
                                     CGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAG                                                          <  SRR4302541.8373119/94‑1 (MQ=60)
                                      GGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGCACCCCTGGCGCAGCGCTTTGTTTTTCCACTGCAACCGC                                                         >  SRR4302541.6986553/1‑94 (MQ=60)
                                      GGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGGACCCCCGGCGCCGCGGTTTTTTATTCCACTGAAACAGC                                                         >  SRR4302541.6986552/1‑94 (MQ=60)
                                       GCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCA                                                        <  SRR4302541.3303832/94‑1 (MQ=60)
                                       GCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCA                                                        <  SRR4302541.1118552/94‑1 (MQ=60)
                                        CATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCAT                                                       >  SRR4302541.3084025/1‑94 (MQ=60)
                                        CATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCAT                                                       <  SRR4302541.4348272/94‑1 (MQ=60)
                                         ATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATA                                                      <  SRR4302541.1806640/94‑1 (MQ=60)
                                          TCCATCTACCGGAGATGAAACCCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATCCCACTGAAACAGCATAT                                                     <  SRR4302541.4330979/94‑1 (MQ=60)
                                          TCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCGCCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATAT                                                     <  SRR4302541.4000442/94‑1 (MQ=60)
                                          TCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATAT                                                     <  SRR4302541.3952707/94‑1 (MQ=60)
                                          TCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATAT                                                     <  SRR4302541.2104203/94‑1 (MQ=60)
                                            CATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGCACCCCTGGCGCAGCGGTTTGTTATTCCACTGAAACAGCATATTG                                                   >  SRR4302541.4026540/1‑94 (MQ=60)
                                            CATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTG                                                   <  SRR4302541.1655041/94‑1 (MQ=60)
                                            CATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAAGCACCCCCGGCGCGGCGCTTTGTTATTTCACTGAAACAGCATATTG                                                   >  SRR4302541.3560197/1‑94 (MQ=60)
                                             ATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGG                                                  <  SRR4302541.1230374/94‑1 (MQ=60)
                                              TCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGC                                                 >  SRR4302541.6187202/1‑94 (MQ=60)
                                               CCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCG                                                >  SRR4302541.6154626/1‑94 (MQ=60)
                                                CACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCCGCGGTTTGTTATTCCACTGAAAAAGCATATTTGCGC                                               >  SRR4302541.181303/1‑94 (MQ=60)
                                                CACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGC                                               <  SRR4302541.2818198/94‑1 (MQ=60)
                                                 ACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCGACCCCGGCGCAGCGGTTTGGTATTTCACTGAAACAGCATATTTGCGCT                                              >  SRR4302541.706196/1‑94 (MQ=60)
                                                   CGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCCTGAGCGGCGTTTTGTTATTTCACTGAAATAACATATATGCGCTGA                                            >  SRR4302541.5307188/1‑94 (MQ=48)
                                                    GGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAA                                           >  SRR4302541.8706850/1‑94 (MQ=60)
                                                    GGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAA                                           >  SRR4302541.826013/1‑94 (MQ=60)
                                                      AGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCCGGCACCCCCGGCGCCGCGGTTTGTTATTTCACTGAAACAACATATTTGAGCTGGAGG                                         >  SRR4302541.316760/1‑94 (MQ=50)
                                                      AGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGG                                         >  SRR4302541.4257324/1‑94 (MQ=60)
                                                      AGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGG                                         <  SRR4302541.8850076/94‑1 (MQ=60)
                                                          GAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAG                                     <  SRR4302541.3688419/94‑1 (MQ=60)
                                                          GAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAG                                     <  SRR4302541.6857824/94‑1 (MQ=60)
                                                           AAAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGT                                    <  SRR4302541.1258056/94‑1 (MQ=60)
                                                            AAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTT                                   <  SRR4302541.3384755/94‑1 (MQ=60)
                                                            AAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTT                                   <  SRR4302541.1489538/94‑1 (MQ=60)
                                                            AAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTT                                   <  SRR4302541.3284890/94‑1 (MQ=60)
                                                            AAACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCCCTGAAGGGGAGTT                                   >  SRR4302541.7313951/1‑94 (MQ=60)
                                                             AACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTG                                  <  SRR4302541.145727/94‑1 (MQ=60)
                                                              ACCCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGT                                 <  SRR4302541.8540235/94‑1 (MQ=60)
                                                                CCAGTCCAACGGTACACCCCTGCGCCTGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGC                               >  SRR4302541.467539/1‑94 (MQ=60)
                                                                CCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGC                               <  SRR4302541.8695115/94‑1 (MQ=60)
                                                                CCAGTCCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTCGCGCTGAAGGTGAGTTGTGC                               <  SRR4302541.8625712/94‑1 (MQ=60)
                                                                     CCAACGGTACACCCCTGCGCCCGGCACCCCTGGCGCAGCGTTTTGTTATTTCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAG                          >  SRR4302541.7328179/1‑94 (MQ=60)
                                                                     CCAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAG                          <  SRR4302541.682423/94‑1 (MQ=60)
                                                                      CAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCCGCGTTTTGTTATTCCACTGAAAAAACCTATTGGGGCTGAAGGTGAGGTGTGCGTTggg                         >  SRR4302541.600194/1‑91 (MQ=60)
                                                                      CAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGC                         <  SRR4302541.1661543/94‑1 (MQ=60)
                                                                      CAACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGC                         <  SRR4302541.3173983/94‑1 (MQ=60)
                                                                       AACGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCG                        <  SRR4302541.1674044/94‑1 (MQ=60)
                                                                         CGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTC                      <  SRR4302541.7837257/94‑1 (MQ=60)
                                                                         CGGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTC                      <  SRR4302541.2013241/94‑1 (MQ=60)
                                                                          GGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCG                     <  SRR4302541.3562737/94‑1 (MQ=60)
                                                                          GGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCG                     <  SRR4302541.145471/94‑1 (MQ=60)
                                                                          GGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCG                     <  SRR4302541.6413694/94‑1 (MQ=60)
                                                                          CGTACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCG                     <  SRR4302541.7120754/94‑1 (MQ=60)
                                                                            GACACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGC                   <  SRR4302541.1180762/94‑1 (MQ=60)
                                                                             ACACCCCTGCGCCAGGCACCCCTGGCGCAGCGCTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGGTGTGCGTTAGCGTCGGCG                  >  SRR4302541.284991/1‑94 (MQ=60)
                                                                              CACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGA                 <  SRR4302541.4115521/94‑1 (MQ=60)
                                                                              CACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGA                 >  SRR4302541.1231282/1‑94 (MQ=60)
                                                                               ACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGAT                >  SRR4302541.2424421/1‑94 (MQ=60)
                                                                               ACCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGAT                >  SRR4302541.7853995/1‑94 (MQ=60)
                                                                                CCCCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATA               <  SRR4302541.2804290/94‑1 (MQ=60)
                                                                                  CCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAA             <  SRR4302541.6244422/94‑1 (MQ=60)
                                                                                  CCTGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAA             <  SRR4302541.6272984/94‑1 (MQ=60)
                                                                                    TGCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGT           <  SRR4302541.607799/94‑1 (MQ=60)
                                                                                     GCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTA          <  SRR4302541.4026133/94‑1 (MQ=60)
                                                                                     GCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTA          <  SRR4302541.3932487/94‑1 (MQ=60)
                                                                                     GCGCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTA          <  SRR4302541.4845722/94‑1 (MQ=60)
                                                                                       GCCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATT        <  SRR4302541.4751399/94‑1 (MQ=60)
                                                                                        CCAGGCACCCCTGGCTCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTG       <  SRR4302541.1500780/94‑1 (MQ=60)
                                                                                        CCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAATCAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTG       <  SRR4302541.8908030/94‑1 (MQ=60)
                                                                                        CCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTG       <  SRR4302541.2392477/94‑1 (MQ=60)
                                                                                        CCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTG       <  SRR4302541.5448892/94‑1 (MQ=60)
                                                                                        CCAGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTG       <  SRR4302541.1500779/94‑1 (MQ=60)
                                                                                          AGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCG     >  SRR4302541.4902433/1‑94 (MQ=60)
                                                                                          AGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCG     <  SRR4302541.4450378/94‑1 (MQ=60)
                                                                                          AGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCG     <  SRR4302541.4317111/94‑1 (MQ=60)
                                                                                          AGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCG     <  SRR4302541.8830894/94‑1 (MQ=60)
                                                                                          AGGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCG     >  SRR4302541.6445118/1‑94 (MQ=60)
                                                                                           GGCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGC    <  SRR4302541.3635971/94‑1 (MQ=60)
                                                                                            GCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCG   >  SRR4302541.2218131/1‑94 (MQ=60)
                                                                                            GCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCG   <  SRR4302541.3460184/94‑1 (MQ=60)
                                                                                            GCACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCG   <  SRR4302541.3460185/94‑1 (MQ=60)
                                                                                             CACCCCTGTCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGG  <  SRR4302541.7874849/94‑1 (MQ=60)
                                                                                             CACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGG  >  SRR4302541.52325/1‑94 (MQ=60)
                                                                                             |                                                                                             
CTGCATTCAGAAAAAATAAAATCTGGGATTTCAACGGCGGCATCCATCCACCGGAGATGAAAACCCAGTCCAACGGTACACCCCTGCGCCAGGTACCCCTGGCGCAGCGTTTTGTTATTCCACTGAAACAGCATATTGGCGCTGAAGGTGAGTTGTGCGTTAGCGTCGGCGATAAAGTATTGCGCGG  >  NC_000913/1704959‑1705145

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑