Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F1 I2 R1 884 257.2 12958910 96.9% 12557183 93.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,730,968 T→C S1286S (AGT→AGC)  lhr → Lhr

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,730,9680TC100.0% 725.0 / NA 208S1286S (AGT→AGC) lhrLhr
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (107/101);  total (107/101)

Only 100 of 215 total aligned reads displayed.

TGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTA  >  NC_000913/1730878‑1731057
                                                                                          |                                                                                         
tGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTc                                                                                         >  1:899614/1‑93 (MQ=255)
 tcccTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTcc                                                                                        <  2:236725/92‑1 (MQ=255)
 gCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTcc                                                                                        >  2:205328/1‑93 (MQ=255)
   ccTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCaa                                                                                      <  2:195325/93‑1 (MQ=255)
    cTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAac                                                                                     <  1:2622885/93‑1 (MQ=255)
      gCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgc                                                                                   <  1:3326009/93‑1 (MQ=255)
         agagGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAacgcacg                                                                                >  1:4755589/1‑93 (MQ=255)
            ggCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACgcacgcac                                                                             <  2:1741642/93‑1 (MQ=255)
            ggCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACgcacgcac                                                                             >  2:5900548/1‑93 (MQ=255)
             gCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCTGCAGCAGCTCCAACGCACGCAcc                                                                            >  1:3832562/1‑93 (MQ=255)
             gCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCAcc                                                                            <  1:5466319/93‑1 (MQ=255)
             gCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCAcc                                                                            >  2:5074459/1‑93 (MQ=255)
             gCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCAcc                                                                            <  1:6076744/93‑1 (MQ=255)
             gCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCAcc                                                                            <  2:3554918/93‑1 (MQ=255)
              cGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCt                                                                           <  1:489666/93‑1 (MQ=255)
                ttATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCa                                                                         >  2:3958056/1‑93 (MQ=255)
                  tcggggGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAAc                                                                       <  2:3628981/91‑1 (MQ=255)
                   tGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACt                                                                      <  2:4561960/93‑1 (MQ=255)
                   tGGGAGCTGGTCTGACAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACt                                                                      <  2:4052586/93‑1 (MQ=255)
                    gggCGCTGGTCTGGCAAGGCGTCATCGCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTc                                                                     <  1:826271/93‑1 (MQ=255)
                    gggCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTc                                                                     <  2:598550/93‑1 (MQ=255)
                    gggCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTc                                                                     <  1:4395622/93‑1 (MQ=255)
                     ggCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCCCCTCAACTcg                                                                    >  1:1336334/1‑93 (MQ=255)
                     ggCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcg                                                                    >  1:6439119/1‑93 (MQ=255)
                     ggCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcg                                                                    <  1:3719754/93‑1 (MQ=255)
                     ggCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcg                                                                    >  1:6036234/1‑93 (MQ=255)
                      gcgcTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCGCAACTcgc                                                                   <  1:6289578/93‑1 (MQ=255)
                       ggcTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcgcc                                                                  <  1:4014934/92‑1 (MQ=255)
                       cgcTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcgcc                                                                  <  2:4707341/93‑1 (MQ=255)
                        gcTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTcgccg                                                                 <  1:5348086/93‑1 (MQ=255)
                          tGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCa                                                               <  2:5683618/93‑1 (MQ=255)
                           ggTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAg                                                              >  2:3741095/1‑93 (MQ=255)
                            gTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGt                                                             >  2:4628446/1‑93 (MQ=255)
                             tCTGGCAAGGCGTCATCACCAGCGACATTTGGGCCCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTc                                                            <  2:371211/93‑1 (MQ=255)
                             tCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTc                                                            <  1:474224/93‑1 (MQ=255)
                             tCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTc                                                            <  1:2404131/93‑1 (MQ=255)
                              cTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCa                                                           <  2:5483360/93‑1 (MQ=255)
                              cTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCa                                                           <  1:1675134/93‑1 (MQ=255)
                               tGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAc                                                          >  1:3965182/1‑93 (MQ=255)
                               tGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAc                                                          <  2:6272199/93‑1 (MQ=255)
                                ggCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAcc                                                         >  1:762595/1‑93 (MQ=255)
                                  cAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCgg                                                       <  2:4573064/93‑1 (MQ=255)
                                   aaGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCggg                                                      <  2:1861903/93‑1 (MQ=255)
                                    aGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCACCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGc                                                     >  2:6189998/1‑93 (MQ=255)
                                     ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCGCCGGGCt                                                    <  1:2588166/93‑1 (MQ=255)
                                     ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCt                                                    <  2:5270509/93‑1 (MQ=255)
                                     ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCt                                                    >  2:2577417/1‑93 (MQ=255)
                                     ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCt                                                    >  2:1458478/1‑93 (MQ=255)
                                     ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCt                                                    >  2:732752/1‑93 (MQ=255)
                                     ggCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCt                                                    <  2:1334011/93‑1 (MQ=255)
                                      gCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtc                                                   <  2:5627474/93‑1 (MQ=255)
                                      gCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtc                                                   >  2:413368/1‑93 (MQ=255)
                                      gCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtc                                                   <  2:4396907/93‑1 (MQ=255)
                                        gTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgt                                                 <  1:3474369/93‑1 (MQ=255)
                                         tcatcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgtc                                                >  2:3249020/1‑93 (MQ=255)
                                         tcatcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgtc                                                >  1:365422/1‑93 (MQ=255)
                                         tcatcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCtcgtc                                                >  1:3279759/1‑93 (MQ=255)
                                           atcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTcgtcgt                                              >  2:2727522/1‑93 (MQ=255)
                                            tcaCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTg                                             >  1:5686264/1‑93 (MQ=255)
                                            tcaCCAGCGACATTTGGGCACCGTGACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTg                                             <  1:4247596/93‑1 (MQ=255)
                                             caCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGCgg                                            >  2:2681371/1‑93 (MQ=255)
                                              aCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGa                                           >  2:5752022/1‑93 (MQ=255)
                                              aCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGa                                           >  1:1048943/1‑93 (MQ=255)
                                                 aGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGt                                        <  2:5430119/93‑1 (MQ=255)
                                                  gCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTc                                       >  2:1674571/1‑93 (MQ=255)
                                                   cGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTcc                                      <  2:3405710/93‑1 (MQ=255)
                                                    gACATTTGGGCACCGTTCCGCGCCCTCCACCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCt                                     <  1:2813328/93‑1 (MQ=255)
                                                    gACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCt                                     >  1:1416634/1‑93 (MQ=255)
                                                     aCATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTg                                    <  1:2515139/93‑1 (MQ=255)
                                                        tttGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGCCGTCCTGTCt                                 >  1:196869/1‑93 (MQ=255)
                                                         ttGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTa                                <  1:2135756/93‑1 (MQ=255)
                                                         ttGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTa                                <  2:6442116/93‑1 (MQ=255)
                                                          tGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTAt                               <  1:3928856/93‑1 (MQ=255)
                                                          tGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTAt                               <  1:510462/93‑1 (MQ=255)
                                                          tGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTAt                               <  1:5273271/93‑1 (MQ=255)
                                                           gggCACCGTTACGCGCCCTCANCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATg                              <  2:2912440/93‑1 (MQ=255)
                                                           gggCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATg                              >  2:6389649/1‑93 (MQ=255)
                                                            ggCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATgc                             <  2:1794667/93‑1 (MQ=255)
                                                             gCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATgcg                            >  2:5164065/1‑93 (MQ=255)
                                                               aCCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCa                          >  1:1554514/1‑93 (MQ=255)
                                                                ccGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCaa                         >  1:6208006/1‑93 (MQ=255)
                                                                 cGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAc                        >  2:6027495/1‑93 (MQ=255)
                                                                  gTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAcc                       >  2:2164324/1‑93 (MQ=255)
                                                                  gTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAcc                       <  2:6150790/93‑1 (MQ=255)
                                                                   ttACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAAccc                      <  2:2607614/93‑1 (MQ=255)
                                                                        cgcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCACCTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGtctc                 <  1:17633/93‑1 (MQ=255)
                                                                        cgcCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGtctc                 >  2:4843613/1‑93 (MQ=255)
                                                                          cccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgc               <  1:4600769/93‑1 (MQ=255)
                                                                           ccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgcc              >  2:3645230/1‑93 (MQ=255)
                                                                           ccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgcc              >  1:2330887/1‑93 (MQ=255)
                                                                           ccTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgcc              >  1:4698662/1‑93 (MQ=255)
                                                                            cTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgccg             >  2:4164738/1‑93 (MQ=255)
                                                                            cTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTcgccg             <  1:4999890/93‑1 (MQ=255)
                                                                              cACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCcgcg           <  2:2990090/93‑1 (MQ=255)
                                                                              cACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCcgcg           <  1:3732814/93‑1 (MQ=255)
                                                                                  cGCAGCAGCGCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTa       <  1:5527618/93‑1 (MQ=255)
                                                                                   gcagcaGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTAt      <  2:1575014/93‑1 (MQ=255)
                                                                                    cagcagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATc     >  1:3535319/1‑93 (MQ=255)
                                                                                     agcagcTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCt    <  1:2873067/93‑1 (MQ=255)
                                                                                       cagCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTa  <  1:1864829/93‑1 (MQ=255)
                                                                                          |                                                                                         
TGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTA  >  NC_000913/1730878‑1731057

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

BRESEQ :: bam2aln output
CTCTGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTACAAC  >  NC_000913/1730875‑1731061
                                                                                             |                                                                                             
CTCTGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGC                                                                                               >  SRR4302534.4535652/1‑94 (MQ=60)
  CTGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTC                                                                                             >  SRR4302534.922416/1‑94 (MQ=60)
    GCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCA                                                                                           >  SRR4302534.166586/1‑94 (MQ=60)
     CCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAA                                                                                          >  SRR4302534.2361185/1‑94 (MQ=60)
      CCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAAC                                                                                         >  SRR4302534.3825836/1‑94 (MQ=60)
       CTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACG                                                                                        <  SRR4302534.2692273/94‑1 (MQ=60)
       CTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACG                                                                                        >  SRR4302534.5829131/1‑94 (MQ=60)
        TGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGC                                                                                       <  SRR4302534.2689654/94‑1 (MQ=60)
         GCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCA                                                                                      <  SRR4302534.3414958/94‑1 (MQ=60)
           AAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACG                                                                                    >  SRR4302534.4884686/1‑94 (MQ=60)
           AAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACG                                                                                    >  SRR4302534.6104350/1‑94 (MQ=60)
              AGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCAC                                                                                 >  SRR4302534.3584106/1‑94 (MQ=60)
               GGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCTGCAGCAGCTCCAACGCACGCACC                                                                                >  SRR4302534.3935484/1‑94 (MQ=60)
               GGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACC                                                                                >  SRR4302534.987598/1‑94 (MQ=60)
               GGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACC                                                                                >  SRR4302534.2937054/1‑94 (MQ=60)
                GCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCT                                                                               <  SRR4302534.5613663/94‑1 (MQ=60)
                GCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCT                                                                               <  SRR4302534.6241987/94‑1 (MQ=60)
                 CGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTC                                                                              >  SRR4302534.2721531/1‑94 (MQ=60)
                 CGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTC                                                                              <  SRR4302534.501902/94‑1 (MQ=60)
                    TATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAAC                                                                           >  SRR4302534.5676714/1‑94 (MQ=60)
                     ATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACC                                                                          >  SRR4302534.3985608/1‑94 (MQ=60)
                       GGGCGCTGGTCTGGCAAGGCGTCATCGCCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCG                                                                        <  SRR4302534.847065/94‑1 (MQ=60)
                       GGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCCCCTCAACTCG                                                                        >  SRR4302534.1371559/1‑94 (MQ=60)
                       GGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCG                                                                        >  SRR4302534.6612657/1‑94 (MQ=60)
                       GGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCG                                                                        >  SRR4302534.6612656/1‑94 (MQ=60)
                       GGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCG                                                                        <  SRR4302534.4514186/94‑1 (MQ=60)
                       GGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCG                                                                        >  SRR4302534.6200286/1‑94 (MQ=60)
                        GGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGC                                                                       <  SRR4302534.3819740/94‑1 (MQ=60)
                         GCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCGCAACTCGCC                                                                      <  SRR4302534.6459745/94‑1 (MQ=60)
                          GGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCG                                                                     <  SRR4302534.4122525/94‑1 (MQ=60)
                          CGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCG                                                                     >  SRR4302534.472981/1‑94 (MQ=60)
                          CGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCG                                                                     <  SRR4302534.5428033/94‑1 (MQ=60)
                           GCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGGTGCAACGCACGCACCTCAACTCGCCGC                                                                    >  SRR4302534.620810/1‑94 (MQ=60)
                           GCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGC                                                                    >  SRR4302534.620811/1‑94 (MQ=60)
                           GCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGC                                                                    <  SRR4302534.5492286/94‑1 (MQ=60)
                            CTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCA                                                                   <  SRR4302534.6564073/94‑1 (MQ=60)
                            CTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCA                                                                   >  SRR4302534.5050248/1‑94 (MQ=60)
                             TGGTCTGGCAAGGCTTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAG                                                                  <  SRR4302534.4075918/94‑1 (MQ=60)
                             TGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCACAG                                                                  >  SRR4302534.3777985/1‑94 (MQ=60)
                                TCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCA                                                               <  SRR4302534.486159/94‑1 (MQ=60)
                                TCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCA                                                               <  SRR4302534.2468027/94‑1 (MQ=60)
                                TCTGGCAAGGCGTCATCACCAGCGACATTCGGGCACCGTTACGCGCCGTCACCCGCAGCACCGCCAACGCACGCACCTCAACTCGCCGCAGCCA                                                               <  SRR4302534.383966/94‑1 (MQ=60)
                                GCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCA                                                               <  SRR4302534.1502662/94‑1 (MQ=60)
                                 CTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAC                                                              >  SRR4302534.4071325/1‑94 (MQ=60)
                                 CTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAC                                                              <  SRR4302534.1718722/94‑1 (MQ=60)
                                 CTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCAC                                                              >  SRR4302534.1886930/1‑94 (MQ=60)
                                  TGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACC                                                             >  SRR4302534.781524/1‑94 (MQ=60)
                                  TGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACC                                                             <  SRR4302534.5210231/94‑1 (MQ=60)
                                    GCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGG                                                           <  SRR4302534.3503022/94‑1 (MQ=60)
                                    GCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGG                                                           <  SRR4302534.1789972/94‑1 (MQ=60)
                                      AAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGC                                                         >  SRR4302534.870999/1‑94 (MQ=60)
                                       AGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCT                                                        >  SRR4302534.3639710/1‑94 (MQ=60)
                                        GGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCGCCGGGCTC                                                       <  SRR4302534.2656678/94‑1 (MQ=60)
                                         GCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCG                                                      <  SRR4302534.3053794/94‑1 (MQ=60)
                                           GTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTC                                                    <  SRR4302534.1144325/94‑1 (MQ=60)
                                           GTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTC                                                    <  SRR4302534.3567761/94‑1 (MQ=60)
                                           GTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTC                                                    <  SRR4302534.4559808/94‑1 (MQ=60)
                                           GTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTC                                                    >  SRR4302534.374749/1‑94 (MQ=60)
                                           GTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTC                                                    >  SRR4302534.3367174/1‑94 (MQ=60)
                                            TTATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCG                                                   >  SRR4302534.1972797/1‑94 (MQ=60)
                                             AATCACCAGCAACATTTGGGCACCGTTATGCGCCCTGACCCGCAGCAGCTCCAACGCACGCACCTAAACTCGCCGCAGTCACCGGcatcgtcca                                                  >  SRR4302534.2197051/1‑85 (MQ=60)
                                              ATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTG                                                 <  SRR4302534.2423920/94‑1 (MQ=60)
                                              ATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTG                                                 >  SRR4302534.5840252/1‑94 (MQ=60)
                                               TCACCAGCGACATTTGGGCACCGTGACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGG                                                <  SRR4302534.4362168/94‑1 (MQ=60)
                                                CACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGA                                               >  SRR4302534.1076092/1‑94 (MQ=60)
                                                 ACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGAC                                              >  SRR4302534.5264833/1‑94 (MQ=60)
                                                   CAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGT                                            >  SRR4302534.2820181/1‑94 (MQ=60)
                                                      CGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCT                                         >  SRR4302534.5737317/1‑94 (MQ=60)
                                                      CGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCT                                         >  SRR4302534.1453901/1‑94 (MQ=60)
                                                      CGACATTTGGCCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCATCTCGCCGCAGTCCCCGGGCTAGTCGTGGACGTCCT                                         <  SRR4302534.2934955/94‑1 (MQ=60)
                                                       GACATTTGGGCACCGTTCCGCGCCCTCCACCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTG                                        <  SRR4302534.2887290/94‑1 (MQ=60)
                                                        ACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGT                                       <  SRR4302534.2581926/94‑1 (MQ=60)
                                                          ATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGCCGTCCTGTCT                                     >  SRR4302534.202038/1‑94 (MQ=60)
                                                            TTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTAT                                   <  SRR4302534.2192061/94‑1 (MQ=60)
                                                            TTGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGAAACTCCACTCGCCGCAGTCCCCCGGCTCGTCGTGGACGTCCTGTCTAT                                   >  SRR4302534.4853259/1‑94 (MQ=60)
                                                             TGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATG                                  <  SRR4302534.4034108/94‑1 (MQ=60)
                                                             TGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATG                                  <  SRR4302534.523178/94‑1 (MQ=60)
                                                             TGGGCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATG                                  <  SRR4302534.5415699/94‑1 (MQ=60)
                                                                GCACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGC                               >  SRR4302534.1438984/1‑94 (MQ=60)
                                                                 CACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCA                              >  SRR4302534.6401481/1‑94 (MQ=60)
                                                                 CACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCA                              >  SRR4302534.1595223/1‑94 (MQ=60)
                                                                  ACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAA                             >  SRR4302534.4845887/1‑94 (MQ=60)
                                                                  ACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAA                             >  SRR4302534.3730900/1‑94 (MQ=60)
                                                                  ACCGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAA                             >  SRR4302534.6376772/1‑94 (MQ=60)
                                                                    CGTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACC                           >  SRR4302534.5067641/1‑94 (MQ=60)
                                                                     GTTACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCC                          <  SRR4302534.2101315/94‑1 (MQ=60)
                                                                       TACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGT                        >  SRR4302534.4459160/1‑94 (MQ=60)
                                                                        ACGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTC                       >  SRR4302534.5023529/1‑94 (MQ=60)
                                                                         CGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCT                      <  SRR4302534.1924486/94‑1 (MQ=60)
                                                                         CGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCT                      <  SRR4302534.4313447/94‑1 (MQ=60)
                                                                         CGCGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCT                      <  SRR4302534.6318815/94‑1 (MQ=60)
                                                                           CGCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCACCTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCG                    <  SRR4302534.18105/94‑1 (MQ=60)
                                                                            GCCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGC                   >  SRR4302534.820002/1‑94 (MQ=60)
                                                                             CCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCC                  >  SRR4302534.2392722/1‑94 (MQ=60)
                                                                             CCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCC                  <  SRR4302534.2472044/94‑1 (MQ=60)
                                                                             CCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCC                  >  SRR4302534.4826203/1‑94 (MQ=60)
                                                                             CCCTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCC                  <  SRR4302534.4725633/94‑1 (MQ=60)
                                                                               CTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGC                <  SRR4302534.5548745/94‑1 (MQ=60)
                                                                               CTCACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGC                <  SRR4302534.5135069/94‑1 (MQ=60)
                                                                                 CACCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGG              <  SRR4302534.3833110/94‑1 (MQ=60)
                                                                                  CCCCGCAGCAGCTCCAACGCCCGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGCACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGG             <  SRR4302534.4212038/94‑1 (MQ=60)
                                                                                  CCCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGG             <  SRR4302534.4034133/94‑1 (MQ=60)
                                                                                   CCCGCAGCCTCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTATCTATGCTCAACCCGTCTCGCCGCGGGT            <  SRR4302534.763334/94‑1 (MQ=60)
                                                                                   CCCGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGT            <  SRR4302534.3400965/94‑1 (MQ=60)
                                                                                     CGCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTAT          >  SRR4302534.844214/1‑94 (MQ=60)
                                                                                     CGCAGCAGCGCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTAT          <  SRR4302534.5676802/94‑1 (MQ=60)
                                                                                     CGCAGCAACTCCAACGCACGCACCTCAACTCGCCGCAGGCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTAT          <  SRR4302534.4179019/94‑1 (MQ=60)
                                                                                      GCAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATC         >  SRR4302534.3630410/1‑94 (MQ=60)
                                                                                      GCAGCAGCGCAAACGCACGCACCTCAACTCGCCGCAGTCACCGTGCTCGTCGTGAACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATC         <  SRR4302534.741740/94‑1 (MQ=60)
                                                                                       CAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCT        >  SRR4302534.4874672/1‑94 (MQ=60)
                                                                                       CAGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCT        >  SRR4302534.2648265/1‑94 (MQ=60)
                                                                                        AGCAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTT       <  SRR4302534.2948512/94‑1 (MQ=60)
                                                                                          CAGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTAC     <  SRR4302534.1913372/94‑1 (MQ=60)
                                                                                           AGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTACA    >  SRR4302534.6607893/1‑94 (MQ=60)
                                                                                           AGCTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTACA    >  SRR4302534.25011/1‑94 (MQ=60)
                                                                                             CTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTACAAC  <  SRR4302534.1952970/94‑1 (MQ=60)
                                                                                             CTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTACAAC  >  SRR4302534.966271/1‑94 (MQ=60)
                                                                                             CTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTACAAC  >  SRR4302534.328675/1‑94 (MQ=60)
                                                                                             CTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCGATGCGCAACCCGTCTCGCCGCGGGTATCTTACAAC  <  SRR4302534.2215014/94‑1 (MQ=60)
                                                                                             |                                                                                             
CTCTGCCCTGCAAGAGGCGTTATGGGCGCTGGTCTGGCAAGGCGTCATCACCAGCGACATTTGGGCACCGTTACGCGCCCTCACCCGCAGCAGTTCCAACGCACGCACCTCAACTCGCCGCAGTCACCGGGCTCGTCGTGGACGTCCTGTCTATGCGCAACCCGTCTCGCCGCGGGTATCTTACAAC  >  NC_000913/1730875‑1731061

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑