Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,092 |
+CC |
intergenic (+26/+58) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,091 | 1 | . | C | 93.7%
| 362.6
/ 23.2
| 142 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (1/8); new base C (10/123); total (11/131) |
| Fisher's exact test for biased strand distribution p-value = 5.27e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 |
| * | NC_000913 | 3,957,091 | 2 | . | C | 93.7%
| 363.6
/ 23.2
| 142 | intergenic (+25/+59) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (1/8); new base C (10/123); total (11/131) |
| Fisher's exact test for biased strand distribution p-value = 5.27e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.27e-01 |
Only 100 of 158 total aligned reads displayed.
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957000‑3957173
||
tGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑c < 2:3286395/93‑1 (MQ=255)
gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑GCCCCCCCCCC‑‑A‑‑cccc > 2:5077826/1‑90 (MQ=255)
gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑ccgt < 1:3349452/93‑4 (MQ=255)
gCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑c‑cct < 2:1184061/93‑1 (MQ=255)
ggtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑cctctc > 1:858430/1‑91 (MQ=255)
ggtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑cctctc < 2:3494109/93‑3 (MQ=255)
ggtaggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑cctctc < 2:610770/93‑3 (MQ=255)
ggtagagaAGAAACTGCGCGACTATATGACAGATATGAAACGTATTGCTGTTGCGTGTTAAGTGCGCGCTGATG‑CCCTCGCCCCG‑‑A‑‑C‑cctctc < 2:2820609/93‑3 (MQ=37)
taggtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑cctctccc < 2:5852981/93‑5 (MQ=255)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCcaca < 2:4117146/93‑1 (MQ=38)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCcaca < 1:4224652/93‑1 (MQ=38)
gtaAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCcaca < 2:3856588/93‑1 (MQ=38)
taAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAGGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACag < 1:2387100/93‑1 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCcacacg > 2:2073569/1‑91 (MQ=37)
aaGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCCCTCCCCC‑‑A‑‑C‑ACCCCcccacccc > 1:386143/1‑89 (MQ=255)
aGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACaggg < 1:2990561/93‑1 (MQ=37)
aaCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggaga < 2:2604224/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagag < 2:3153435/93‑1 (MQ=37)
aCTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagag < 1:1636071/93‑1 (MQ=37)
cTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagagg < 1:354695/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagaggg < 1:6093181/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagaggg < 1:5449868/93‑1 (MQ=25)
tGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagaggg < 2:4080743/93‑1 (MQ=25)
gcgcGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCGCCC‑‑C‑TCTCCCACagggagaggga < 1:129307/93‑1 (MQ=25)
cgcgGCTATATGACAGATAGGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACagggagagggag < 2:1195481/93‑1 (MQ=25)
gctgCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAgggagagggaga < 1:1005045/90‑1 (MQ=21)
gcgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAgggagagggaga < 2:3815556/93‑1 (MQ=25)
cgGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGaa < 2:1727305/93‑1 (MQ=25)
ggCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGaaa < 2:5410557/93‑1 (MQ=25)
gCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGGGCGCGCTGATGCCCCTGTCACGG‑‑A‑‑CGTCTCCCACCCGGAGAGGGGGaaca > 1:2089165/1‑91 (MQ=255)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAac > 1:3247110/1‑93 (MQ=21)
cTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAac < 1:1351145/93‑1 (MQ=21)
atatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAacac < 1:4174166/93‑1 (MQ=21)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACt < 2:2831649/93‑1 (MQ=21)
tatGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACt < 1:2623633/93‑1 (MQ=21)
atGACAGATATGAAACGTATTGCTGTTGCGGGTTACGTGCGCGCTGATG‑CCCTCGCCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTc < 2:4552696/93‑1 (MQ=21)
tGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCa < 1:4823172/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCaa < 1:1783949/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCaa < 1:1013524/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCaa < 1:1454246/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑g < 2:622719/93‑1 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑gg > 2:3191891/1‑92 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑gg < 1:2237195/93‑2 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCACG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑gg < 2:4658949/93‑2 (MQ=21)
gATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑ggcc < 2:5481310/93‑4 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑ggcct < 2:1523584/93‑5 (MQ=21)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtc < 1:3153491/93‑1 (MQ=18)
atGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtc < 1:3935850/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtctc < 1:6083213/93‑1 (MQ=18)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtctc < 2:1923959/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTtctca < 1:2069487/93‑2 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTcc < 2:4411706/93‑1 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTg < 1:5338660/93‑1 (MQ=18)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTgg < 1:5554151/93‑1 (MQ=18)
cGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTgg < 2:6374374/93‑1 (MQ=21)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGga < 2:254129/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGga < 1:4455735/93‑1 (MQ=18)
aTTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGgaga < 2:2040703/93‑1 (MQ=18)
gCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAgg < 1:363040/93‑1 (MQ=18)
tGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGcc < 2:1050033/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCt < 1:4627217/93‑1 (MQ=18)
ttGCGGGTTAAGTGCGCGCTAATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCtt < 2:213704/93‑1 (MQ=18)
tGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTg < 2:2910210/93‑1 (MQ=18)
tGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTg < 2:3887439/93‑1 (MQ=18)
gCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGc < 1:4099594/93‑1 (MQ=18)
cGGGTTAAGTGCGCGCTGATG‑CCCTCCCCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCt < 2:5291380/93‑1 (MQ=18)
cGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCt < 2:2130620/93‑1 (MQ=18)
cGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCt < 1:1302114/93‑1 (MQ=18)
cGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCC‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCt > 2:1003920/1‑93 (MQ=18)
gggTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTa < 2:6110777/93‑1 (MQ=18)
ggTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 2:3128559/93‑1 (MQ=18)
gTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTAtt < 1:1165686/93‑1 (MQ=18)
ttAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTa < 1:2583127/93‑1 (MQ=18)
tAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:6138053/93‑1 (MQ=18)
tAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 1:3732241/93‑1 (MQ=18)
aaGTGCGCGCTGATG‑CCCTCGCCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:2692296/93‑1 (MQ=18)
aaGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACGCTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:4512314/93‑1 (MQ=18)
aGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:5691133/93‑1 (MQ=18)
aGTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:2604575/93‑1 (MQ=18)
gTGCGCGCTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 1:3979240/93‑1 (MQ=18)
gcgcgcTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCg < 1:3262793/93‑1 (MQ=21)
gcTGATG‑CCGTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:1044885/93‑1 (MQ=21)
gcTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:83492/93‑1 (MQ=21)
cTGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACa < 2:6451767/93‑1 (MQ=21)
tGATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 1:1848148/93‑1 (MQ=25)
cgATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 2:3119394/92‑1 (MQ=25)
gATG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:555552/93‑1 (MQ=25)
aTG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCa < 2:6324766/93‑1 (MQ=25)
tG‑CCCTCACCCCGCCC‑‑C‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 1:3453432/93‑1 (MQ=25)
tG‑CCCTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 2:760353/93‑1 (MQ=25)
g‑CCCTCACCCCG‑‑ACCC‑TCTACCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc > 2:5520604/1‑93 (MQ=25)
cccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:500823/93‑1 (MQ=25)
cccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTCCTCCTGGAGAACGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:2821905/93‑1 (MQ=21)
ccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:5280271/93‑1 (MQ=25)
ccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:5104223/93‑1 (MQ=25)
ccTCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:2698188/93‑1 (MQ=25)
tCACCCCG‑‑ACGC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTGGCGGTACAGCACCTTaa < 2:3182267/93‑1 (MQ=37)
tCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTaa > 1:6225475/1‑93 (MQ=37)
tCACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACAATCAAGGCCTTCTCCTGGAGAAAGCCTTGCTATTAGTTTCGGTACAGCACCTTaa > 2:5642319/1‑93 (MQ=25)
cACCCCG‑‑ACCC‑TCTCCCACAGGGAGAGGGAGAAAACACTCAAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:2853495/93‑1 (MQ=37)
||
TGAGCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATG‑CCCTCACCCCG‑‑A‑‑C‑TCTCCCACAGGGAGAGGGAGAAAACACTCAA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAAT > NC_000913/3957000‑3957173
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957003‑3957184
|
GCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑Ccgtc < SRR4302534.3439134/94‑5 (MQ=60)
GCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CCCTC < SRR4302534.5627625/94‑1 (MQ=60)
AGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CCCTCTC > SRR4302534.880103/1‑94 (MQ=60)
TAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCA > SRR4302534.6609810/1‑94 (MQ=60)
GTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAG < SRR4302534.4338528/94‑1 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAGGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGG < SRR4302534.2450531/94‑1 (MQ=60)
TAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGG < SRR4302534.6239112/94‑1 (MQ=60)
AGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGA < SRR4302534.3068744/94‑1 (MQ=60)
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAG < SRR4302534.106716/94‑1 (MQ=60)
AACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAG < SRR4302534.2819226/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302534.3629060/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302534.1678719/94‑1 (MQ=60)
ACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGG < SRR4302534.4799384/94‑1 (MQ=60)
CTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGG < SRR4302534.363768/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGA < SRR4302534.4118529/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGA < SRR4302534.5596709/94‑1 (MQ=60)
TGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGA < SRR4302534.6258873/94‑1 (MQ=60)
GCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAG < SRR4302534.132723/94‑1 (MQ=60)
GCTGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAA < SRR4302534.1030825/94‑1 (MQ=60)
GGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAA < SRR4302534.4217915/94‑1 (MQ=60)
GCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC > SRR4302534.3333575/1‑94 (MQ=60)
CTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACA < SRR4302534.1386771/94‑1 (MQ=60)
ATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACT < SRR4302534.4286918/94‑1 (MQ=60)
TATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC < SRR4302534.2693038/94‑1 (MQ=60)
ATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑A < SRR4302534.4743327/94‑1 (MQ=60)
TGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA < SRR4302534.4954067/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302534.1039608/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302534.1412322/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302534.1492498/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302534.1830277/94‑1 (MQ=60)
CAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GGC < SRR4302534.2296473/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCT < SRR4302534.3967596/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCT < SRR4302534.1756647/94‑1 (MQ=60)
ATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAAACTC‑AAaggctt > SRR4302534.3363860/1‑88 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTC < SRR4302534.4169904/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCACAGGGGGCGGGGGAAAACACTC‑Acggccttc > SRR4302534.1040876/1‑86 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCT < SRR4302534.4041275/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCT < SRR4302534.3236534/94‑1 (MQ=60)
GAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCC < SRR4302534.6248630/94‑1 (MQ=60)
AAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCT < SRR4302534.3339940/94‑1 (MQ=55)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCAT < SRR4302534.2123616/94‑1 (MQ=57)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGG < SRR4302534.5482590/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGG < SRR4302534.2654603/94‑1 (MQ=60)
cttcTTGCTGTTGCGGGTGAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAATCACTC‑AAGGCCTTCTCCTGGA < SRR4302534.6320036/90‑1 (MQ=32)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGA < SRR4302534.5704094/94‑1 (MQ=60)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAG < SRR4302534.3174935/94‑1 (MQ=60)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAG < SRR4302534.4576179/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAG < SRR4302534.4457118/94‑1 (MQ=49)
GCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGC < SRR4302534.372300/94‑1 (MQ=60)
GCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGC < SRR4302534.1372389/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGCTGCCCTCGCCCCG‑‑ACCCTCTCCGCCAGGGAGAGGGAGACAACGCTC‑AAGGCGTTCTCCTGGAGAAGGCCT < SRR4302534.6293923/94‑1 (MQ=36)
GTTGCGGTTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACCCTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302534.3524881/94‑1 (MQ=35)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTT < SRR4302534.4752764/94‑1 (MQ=60)
TGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCCCAGGGAGAGGGAGAAAAAACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGC > SRR4302534.3278612/1‑94 (MQ=49)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCT < SRR4302534.4209813/94‑1 (MQ=60)
CGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTA < SRR4302534.5209461/94‑1 (MQ=60)
CGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTA < SRR4302534.1336455/94‑1 (MQ=60)
CGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTA < SRR4302534.643403/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTA < SRR4302534.1196294/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCACACGGAGAGGGAGAAAACACTCAAA‑GACTTCTCCTTGAGAAGGGCTTGCTATTA > SRR4302534.2162781/1‑94 (MQ=23)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCCCACGGGGAGGGAGAAAACACTCAAA‑GCCTTCTCCTGGAGAAGGgcctgctatttt > SRR4302534.2187317/1‑82 (MQ=32)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302534.5807261/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302534.2651512/94‑1 (MQ=60)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302534.6305008/94‑1 (MQ=60)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302534.3832525/94‑1 (MQ=60)
AAGTGCGCGCTGATGCCCTCGCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302534.2763435/94‑1 (MQ=60)
AAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACGCTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302534.4634527/94‑1 (MQ=49)
AAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302534.2729221/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302534.2341938/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302534.5845268/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302534.2673493/94‑1 (MQ=60)
GTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGC < SRR4302534.4085726/94‑1 (MQ=60)
GCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGG < SRR4302534.3349675/94‑1 (MQ=60)
GCTGATGCCGTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302534.1071883/94‑1 (MQ=60)
TGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGC < SRR4302534.931591/94‑1 (MQ=60)
TGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGC < SRR4302534.1896233/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302534.569246/94‑1 (MQ=60)
ATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAC < SRR4302534.1262541/94‑1 (MQ=60)
TGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACC < SRR4302534.3546264/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302534.513297/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302534.3783942/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTCCTCCTGGAGAACGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302534.2896096/94‑1 (MQ=60)
CTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAA‑GCCTTCTCCTGGAGAAGGGCTTGCTATTAGTTGCGGTACAGCACCTTAA > SRR4302534.6290108/1‑94 (MQ=60)
CTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA > SRR4302534.6394501/1‑94 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG > SRR4302534.4058229/1‑94 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG > SRR4302534.1075222/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302534.1644849/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302534.4736628/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > SRR4302534.3133339/1‑94 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302534.4086855/94‑1 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCCGGACAGCACCTTAATGATGT > SRR4302534.5661005/1‑94 (MQ=60)
ccgcccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302534.2311525/88‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302534.4257880/89‑1 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302534.1871668/90‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > SRR4302534.312800/4‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302534.6392646/94‑1 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > SRR4302534.5777950/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > SRR4302534.2981984/1‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA < SRR4302534.4855107/92‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302534.2650714/3‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC < SRR4302534.6413475/94‑1 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302534.5725023/1‑94 (MQ=60)
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GCAGGTAGGTAAGAAACTGCGCGGCTATATGACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > NC_000913/3957003‑3957184
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
