Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
884 |
257.2 |
12958910 |
96.9% |
12557183 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,957,124 |
+G |
intergenic (+58/+26) |
ilvC → / ← ppiC |
ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,957,123 | 1 | . | G | 98.9%
| 561.0
/ ‑0.8
| 183 | intergenic (+57/+27) | ilvC/ppiC | ketol‑acid reductoisomerase/peptidyl‑prolyl cis‑trans isomerase C |
| Reads supporting (aligned to +/- strand): ref base . (2/0); new base G (50/131); total (52/131) |
| Fisher's exact test for biased strand distribution p-value = 7.96e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 |
Only 100 of 204 total aligned reads displayed.
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957033‑3957210
|
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑aa < 1:1013524/93‑1 (MQ=21)
gACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑aa < 1:1783949/93‑1 (MQ=21)
aCAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AA‑g < 2:622719/93‑1 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AA‑gg > 2:3191891/1‑92 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AA‑gg < 1:2237195/93‑2 (MQ=21)
cAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCACG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AA‑gg < 2:4658949/93‑2 (MQ=21)
atatGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AA‑ggcct < 2:1523584/93‑5 (MQ=21)
gAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTtctc < 2:1923959/93‑1 (MQ=18)
aagcGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTcc < 1:3253288/90‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTcc < 2:2000249/93‑1 (MQ=18)
aaaCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTtctca < 1:2069487/93‑2 (MQ=18)
aCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTg < 1:2586138/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGga < 1:4455735/93‑1 (MQ=18)
gTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGga < 1:3093559/93‑1 (MQ=18)
ttGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCCCTCCCCCCGGGGGGGGGGGGAAAA‑ACCCAAA‑GCCTTCTCCTCGAGaa > 1:1952279/1‑93 (MQ=12)
gTTGCGGTTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑CCTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:3432653/93‑1 (MQ=17)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCt < 1:4627217/93‑1 (MQ=18)
gTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCCCCGGGGGAGGGGGGAAACAACCC‑AA‑GCCTTCTCCTCGAGAAGGCCt > 2:6379163/1‑93 (MQ=16)
tGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTg < 2:2910210/93‑1 (MQ=18)
cGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCt < 2:2130620/93‑1 (MQ=18)
cGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCt < 1:1302114/93‑1 (MQ=18)
cGGGTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCt > 2:1003920/1‑93 (MQ=18)
ggTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTAt < 2:3128559/93‑1 (MQ=18)
tAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAg < 2:5460211/93‑1 (MQ=18)
aaGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGt < 1:2658925/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:2281406/93‑1 (MQ=18)
aGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGtt < 1:5691133/93‑1 (MQ=18)
gTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTg < 1:3979240/93‑1 (MQ=18)
gcgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGt < 2:3741859/93‑1 (MQ=21)
cgcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTa < 2:764208/93‑1 (MQ=21)
gcTGATGCCGTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 1:1044885/93‑1 (MQ=21)
gcTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTAc < 2:83492/93‑1 (MQ=21)
tGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 1:908507/93‑1 (MQ=25)
cgATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAg < 2:3119394/92‑1 (MQ=25)
gATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGc < 1:555552/93‑1 (MQ=25)
aTGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCa < 1:1230155/93‑1 (MQ=25)
aTGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCa < 2:6324766/93‑1 (MQ=25)
tGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAc < 1:3453432/93‑1 (MQ=25)
gCCCTCACCCCG‑‑ACCCTCTACCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAcc > 2:5520604/1‑93 (MQ=25)
cccTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCt < 1:3684870/93‑1 (MQ=25)
ccTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:5280271/93‑1 (MQ=25)
ccTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCtt < 2:5104223/93‑1 (MQ=25)
tCACCCCG‑‑ACGCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTGGCGGTACAGCACCTTaa < 2:3182267/93‑1 (MQ=37)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTCAAA‑GCCTTCTCCTGGAGAAGGGCTTGCTATTAGTTGCGGTACAGCACCTTaa > 1:6123546/1‑93 (MQ=25)
tCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑AATC‑AAGGCCTTCTCCTGGAGAAAGCCTTGCTATTAGTTTCGGTACAGCACCTTaa > 2:5642319/1‑93 (MQ=25)
cACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAat < 2:2853495/93‑1 (MQ=37)
gaccctctCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAtgtg < 1:1824227/89‑1 (MQ=38)
ccctctCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGat > 2:702516/3‑93 (MQ=255)
cctctCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGata < 1:6223647/92‑1 (MQ=255)
cctctCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGata > 1:2582342/2‑93 (MQ=255)
ctctCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat < 1:6244084/93‑1 (MQ=255)
ctctCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat > 1:2905703/1‑93 (MQ=255)
ctctCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGatat > 1:5625701/1‑93 (MQ=255)
tctcCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATc < 1:2769854/93‑1 (MQ=255)
tcCCACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCg > 2:2142715/1‑93 (MQ=255)
ccACAGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGaa < 2:324246/93‑1 (MQ=255)
cacaGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAc > 2:5312705/1‑93 (MQ=255)
cacaGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAc < 1:5541453/93‑1 (MQ=255)
acaGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACt < 2:379790/93‑1 (MQ=255)
acaGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACt > 1:431313/1‑93 (MQ=255)
caGGGAGAGGGAGAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTg < 1:693811/93‑1 (MQ=255)
agggagagggagAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTgg > 2:4572181/1‑93 (MQ=255)
agggagagggagAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTgg < 2:4154943/93‑1 (MQ=255)
agggagagggagAAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTgg < 1:4982155/93‑1 (MQ=255)
gggagagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTggg < 1:1339427/93‑1 (MQ=255)
gggagagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTggg < 2:2372566/93‑1 (MQ=255)
gggagagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTggg > 1:5802113/1‑93 (MQ=255)
gggagagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTggg < 1:3164676/93‑1 (MQ=255)
ggagagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt < 2:4895567/93‑1 (MQ=255)
ggagagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgt < 1:334185/93‑1 (MQ=255)
gagagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGgtg < 1:1438588/93‑1 (MQ=255)
gagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGtgtg > 1:3111704/1‑93 (MQ=255)
gagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGtgtg > 2:438591/1‑93 (MQ=255)
gagggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGtgtg > 1:5119969/1‑93 (MQ=255)
agggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGc < 2:1765105/93‑1 (MQ=255)
gggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATCTCCGAACTGGGTGTGCa > 2:2699521/1‑93 (MQ=255)
gggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCa < 2:6278330/93‑1 (MQ=255)
ggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAg < 2:3673147/93‑1 (MQ=255)
ggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAg < 2:5712953/93‑1 (MQ=255)
ggagaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAg > 2:3928783/1‑93 (MQ=255)
agaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCg > 2:4471239/1‑93 (MQ=255)
gaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg > 2:117353/1‑93 (MQ=255)
gaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg < 1:4195062/93‑1 (MQ=255)
gaAAAC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCgg < 1:1494056/93‑1 (MQ=255)
aaaaC‑ACTC‑AAGGCCTTTTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCggg > 2:2621518/1‑93 (MQ=255)
aaaaC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCggg < 1:4876554/93‑1 (MQ=255)
aaaaC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCggg > 1:6086207/1‑93 (MQ=255)
aaaC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc < 2:4734772/93‑1 (MQ=255)
aaaC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc > 2:2216629/1‑93 (MQ=255)
aaaC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc < 2:6080620/93‑1 (MQ=255)
aaaC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGc > 2:3865531/1‑93 (MQ=255)
aaC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc < 2:1269961/93‑1 (MQ=255)
aaC‑ACTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGcc < 1:5420713/93‑1 (MQ=255)
ac‑acTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACTTTAATGATGTGATATCCGAACTGGGTGTGCAGCGCGCCg > 2:4859304/1‑93 (MQ=255)
ac‑acTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCg > 1:3887205/1‑93 (MQ=255)
acTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt < 2:591680/93‑1 (MQ=255)
acTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt > 1:5057743/1‑93 (MQ=255)
acTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGt < 2:3607545/93‑1 (MQ=255)
acTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGAAGCGGGCCGGt > 1:3801826/1‑93 (MQ=255)
cTC‑AAGGCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTc < 2:675546/93‑1 (MQ=255)
|
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAAC‑ACTC‑AA‑GCCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTC > NC_000913/3957033‑3957210
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA > NC_000913/3957033‑3957217
|
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302534.1039608/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302534.1830277/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302534.1492498/94‑1 (MQ=60)
GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G < SRR4302534.1412322/94‑1 (MQ=60)
CAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G‑GC < SRR4302534.2296473/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCT < SRR4302534.3967596/94‑1 (MQ=60)
GATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCT < SRR4302534.1756647/94‑1 (MQ=60)
TATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTC < SRR4302534.4169904/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCT < SRR4302534.4041275/94‑1 (MQ=60)
ATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCT < SRR4302534.3236534/94‑1 (MQ=60)
GAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCC < SRR4302534.6248630/94‑1 (MQ=60)
AAGCGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCT < SRR4302534.3339940/94‑1 (MQ=55)
AAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCAT < SRR4302534.2123616/94‑1 (MQ=57)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGG < SRR4302534.5482590/94‑1 (MQ=60)
ACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGG < SRR4302534.2654603/94‑1 (MQ=60)
cttcTTGCTGTTGCGGGTGAAGTGCGCGCTGATGCCCTCCCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAATCACTC‑AAGG‑CCTTCTCCTGGA < SRR4302534.6320036/90‑1 (MQ=32)
CGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGA < SRR4302534.5704094/94‑1 (MQ=60)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAG < SRR4302534.4576179/94‑1 (MQ=60)
GTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAG < SRR4302534.3174935/94‑1 (MQ=60)
TTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAG < SRR4302534.4457118/94‑1 (MQ=49)
GCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGC < SRR4302534.372300/94‑1 (MQ=60)
GCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGC < SRR4302534.1372389/94‑1 (MQ=60)
TGTTGCGGGTTAAGTGCGCGCTGCTGCCCTCGCCCCG‑‑ACCCTCTCCGCCAGGGAGAGGGAGACAACGCTC‑AAGG‑CGTTCTCCTGGAGAAGGCCT < SRR4302534.6293923/94‑1 (MQ=36)
GTTGCGGTTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACCCTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302534.3524881/94‑1 (MQ=35)
GTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTT < SRR4302534.4752764/94‑1 (MQ=60)
TGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCCCAGGGAGAGGGAGAAAAAACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGC > SRR4302534.3278612/1‑94 (MQ=49)
GCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCT < SRR4302534.4209813/94‑1 (MQ=60)
CGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTA < SRR4302534.643403/94‑1 (MQ=60)
CGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTA < SRR4302534.1336455/94‑1 (MQ=60)
CGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTA < SRR4302534.5209461/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTA < SRR4302534.1196294/94‑1 (MQ=60)
GTTAAGTGCGCGCTGATGCCCTCACCCCC‑‑ACCCTCTCCCACACGGAGAGGGAGAAAACACTCAAA‑G‑ACTTCTCCTTGAGAAGGGCTTGCTATTA > SRR4302534.2162781/1‑94 (MQ=23)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCCCACGGGGAGGGAGAAAACACTCAAA‑G‑CCTTCTCCTGGAGAAGGgcctgctatttt > SRR4302534.2187317/1‑82 (MQ=32)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302534.5807261/94‑1 (MQ=60)
TTAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAG < SRR4302534.2651512/94‑1 (MQ=60)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302534.3832525/94‑1 (MQ=60)
TAAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGT < SRR4302534.6305008/94‑1 (MQ=60)
AAGTGCGCGCTGATGCCCTCGCCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302534.2763435/94‑1 (MQ=60)
AAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACGCTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302534.4634527/94‑1 (MQ=49)
AAGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTT < SRR4302534.2729221/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302534.2673493/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302534.2341938/94‑1 (MQ=60)
AGTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTG < SRR4302534.5845268/94‑1 (MQ=60)
GTGCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGC < SRR4302534.4085726/94‑1 (MQ=60)
GCGCGCTGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGG < SRR4302534.3349675/94‑1 (MQ=60)
GCTGATGCCGTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACA < SRR4302534.1071883/94‑1 (MQ=60)
TGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGC < SRR4302534.1896233/94‑1 (MQ=60)
TGATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGC < SRR4302534.931591/94‑1 (MQ=60)
GATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCA < SRR4302534.569246/94‑1 (MQ=60)
ATGCCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCAC < SRR4302534.1262541/94‑1 (MQ=60)
TGCCCTCACCCCGCCC‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACC < SRR4302534.3546264/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302534.513297/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302534.3783942/94‑1 (MQ=60)
CCCTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTCCTCCTGGAGAACGCCTTGCTATTAGTTGCGGTACAGCACCTT < SRR4302534.2896096/94‑1 (MQ=60)
CTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTCAAA‑G‑CCTTCTCCTGGAGAAGGGCTTGCTATTAGTTGCGGTACAGCACCTTAA > SRR4302534.6290108/1‑94 (MQ=60)
CTCACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAA > SRR4302534.6394501/1‑94 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG > SRR4302534.1075222/1‑94 (MQ=60)
CACCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATG > SRR4302534.4058229/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302534.4736628/94‑1 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT > SRR4302534.3133339/1‑94 (MQ=60)
CCCCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGAT < SRR4302534.1644849/94‑1 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302534.4086855/94‑1 (MQ=60)
CCG‑‑ACCCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCCGGACAGCACCTTAATGATGT > SRR4302534.5661005/1‑94 (MQ=60)
ccgcccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGT < SRR4302534.2311525/88‑1 (MQ=60)
cgaccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTG < SRR4302534.4257880/89‑1 (MQ=60)
gaccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGA < SRR4302534.1871668/90‑1 (MQ=60)
accCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGAT > SRR4302534.312800/4‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > SRR4302534.5777950/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT > SRR4302534.2981984/1‑94 (MQ=60)
C‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATAT < SRR4302534.6392646/94‑1 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA > SRR4302534.2650714/3‑94 (MQ=60)
ccCTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATA < SRR4302534.4855107/92‑1 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC > SRR4302534.5725023/1‑94 (MQ=60)
CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATC < SRR4302534.6413475/94‑1 (MQ=60)
TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCC > SRR4302534.4401689/1‑94 (MQ=60)
TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCC < SRR4302534.3764515/94‑1 (MQ=60)
TCTCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCC < SRR4302534.2842753/94‑1 (MQ=60)
CCCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGA < SRR4302534.2341821/94‑1 (MQ=60)
CCCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAA < SRR4302534.5588173/94‑1 (MQ=60)
CCCACAGGGAGAGGGAGAAAACACTC‑AA‑GACCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAA > SRR4302534.3536523/1‑94 (MQ=60)
CCACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAAC > SRR4302534.1303584/1‑94 (MQ=60)
CACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACT < SRR4302534.2641423/94‑1 (MQ=60)
CACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACT > SRR4302534.442316/1‑94 (MQ=60)
CACAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACT < SRR4302534.5691041/94‑1 (MQ=60)
CAGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGG < SRR4302534.710804/94‑1 (MQ=60)
AGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGG > SRR4302534.5959567/1‑94 (MQ=60)
AGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGG < SRR4302534.5116988/94‑1 (MQ=60)
AGGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGG > SRR4302534.1831323/1‑94 (MQ=60)
GGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGT < SRR4302534.2087457/94‑1 (MQ=60)
GGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGT < SRR4302534.3248105/94‑1 (MQ=60)
GGGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGT < SRR4302534.1374731/94‑1 (MQ=60)
GGGAGAGATAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTGGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGT < SRR4302534.7470/94‑1 (MQ=60)
GGAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTG < SRR4302534.342756/94‑1 (MQ=60)
GAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGT < SRR4302534.1476460/94‑1 (MQ=60)
GAGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGT < SRR4302534.6267451/94‑1 (MQ=60)
AGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTG > SRR4302534.5258214/1‑94 (MQ=60)
AGAGGGAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTG > SRR4302534.3193538/1‑94 (MQ=60)
GAGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCG > SRR4302534.1008692/1‑94 (MQ=60)
AGAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGG > SRR4302534.3479663/1‑94 (MQ=60)
GAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG < SRR4302534.4308390/94‑1 (MQ=60)
GAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG < SRR4302534.1533364/94‑1 (MQ=60)
GAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG > SRR4302534.6251696/1‑94 (MQ=60)
GAAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGG < SRR4302534.1044945/94‑1 (MQ=60)
AAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC > SRR4302534.3328042/1‑94 (MQ=60)
AAAACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGC < SRR4302534.5008824/94‑1 (MQ=60)
AACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCG > SRR4302534.3991553/1‑94 (MQ=60)
AACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCG < SRR4302534.5566580/94‑1 (MQ=60)
AACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCG < SRR4302534.5852509/94‑1 (MQ=60)
ACACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGTCGG > SRR4302534.5014747/1‑94 (MQ=60)
CACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGT > SRR4302534.5194352/1‑94 (MQ=60)
CACTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGAAGCGGGCCGGT > SRR4302534.3903901/1‑94 (MQ=60)
CTC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCG < SRR4302534.3182907/94‑1 (MQ=60)
TC‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGG > SRR4302534.2916882/1‑94 (MQ=60)
C‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC > SRR4302534.2677127/1‑94 (MQ=60)
C‑AAGG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGC < SRR4302534.325003/94‑1 (MQ=60)
aagG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCT < SRR4302534.4979249/91‑1 (MQ=60)
aagG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCT < SRR4302534.2116673/91‑1 (MQ=60)
aagG‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCT > SRR4302534.646291/4‑94 (MQ=60)
G‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCC > SRR4302534.1074009/1‑94 (MQ=60)
G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA < SRR4302534.3900642/94‑1 (MQ=60)
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GACAGATATGAAACGTATTGCTGTTGCGGGTTAAGTGCGCGCTGATGCCCTCACCCCG‑‑A‑‑CTCTCCCACAGGGAGAGGGAGAAAACACTC‑AA‑G‑CCTTCTCCTGGAGAAGGCCTTGCTATTAGTTGCGGTACAGCACCTTAATGATGTGATATCCGAACTGGGTGTGCAGCGGGCCGGTCGGCTCCA > NC_000913/3957033‑3957217
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
