Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,729,429 |
G→A |
S773S (TCG→TCA) |
lhr → |
Lhr |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,729,429 | 0 | G | A | 98.7%
| 565.8
/ ‑2.8
| 153 | S773S (TCG→TCA) | lhr | Lhr |
| Reads supporting (aligned to +/- strand): ref base G (1/1); new base A (87/64); total (88/65) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.99e-01 |
Only 100 of 153 total aligned reads displayed.
TGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCA > NC_000913/1729339‑1729518
|
acacCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCAc > 1:3022612/1‑93 (MQ=255)
cacCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACt < 2:2650662/93‑1 (MQ=255)
acCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACtt < 2:423080/93‑1 (MQ=255)
acCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACtt < 2:3921557/93‑1 (MQ=255)
ccGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACttt < 2:5213147/93‑1 (MQ=255)
ccGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACttt < 1:3700794/93‑1 (MQ=255)
cGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACtttt > 2:290061/1‑93 (MQ=255)
cGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACtttt < 2:136801/93‑1 (MQ=255)
cGAGGGTAAATTGCCAGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACtttt < 1:2906505/93‑1 (MQ=255)
gATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTc > 2:2871268/1‑93 (MQ=255)
gATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTc < 1:5442497/93‑1 (MQ=255)
gATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTc > 1:5078020/1‑93 (MQ=255)
gATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTc < 1:429979/93‑1 (MQ=255)
aTGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcg > 1:5237225/1‑93 (MQ=255)
tGGTAAATTGCCCGATGCGGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgc < 1:3713986/93‑1 (MQ=255)
tGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgc < 1:3515989/93‑1 (MQ=255)
tGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgc < 1:269011/93‑1 (MQ=255)
ggTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgcc < 1:5705078/93‑1 (MQ=255)
ggTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgcc > 2:189993/1‑93 (MQ=255)
gTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgccg > 2:4683317/1‑93 (MQ=255)
gTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgccg < 2:3576190/93‑1 (MQ=255)
tAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgccgc < 1:4687600/93‑1 (MQ=255)
tAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgccgc > 1:770506/1‑93 (MQ=255)
aaaTTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCgccgcc < 1:4499053/93‑1 (MQ=255)
aaTTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGccc > 2:1827155/1‑93 (MQ=255)
tGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGtt < 1:2267127/93‑1 (MQ=255)
gATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTcgc > 1:2185587/1‑93 (MQ=255)
gATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTcgc > 1:5361360/1‑93 (MQ=255)
gCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGaa < 1:723499/93‑1 (MQ=255)
gCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGaa < 2:1431618/93‑1 (MQ=255)
gCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGaa > 1:4073776/1‑93 (MQ=255)
ccGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGTCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAAt < 1:3179276/93‑1 (MQ=255)
ccGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAAt < 1:3637637/93‑1 (MQ=255)
cgcgATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATg < 1:4142071/93‑1 (MQ=255)
cgcgATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATg > 1:91390/1‑93 (MQ=255)
cgcgATTGTTTTGTGTGATCCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATg < 1:2929115/93‑1 (MQ=255)
gcgATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATgc < 1:3631638/93‑1 (MQ=255)
aTTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGcgcc > 1:1676374/1‑93 (MQ=255)
tttttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGcgccg > 2:5103715/1‑93 (MQ=255)
ttttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGcgccgc > 2:4630434/1‑93 (MQ=255)
ttttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGcgccgc > 1:4534524/1‑93 (MQ=255)
tttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCcgcg > 2:5530559/1‑93 (MQ=255)
tttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCCCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATgcgcgggg > 2:285193/1‑89 (MQ=255)
ttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCcgcgc < 2:2167420/93‑1 (MQ=255)
tttgtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCcgcgcg > 2:3155008/1‑93 (MQ=255)
tttgtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCcgcgcg > 1:3164553/1‑93 (MQ=255)
tttgtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCcgcgcg > 2:2484032/1‑93 (MQ=255)
gtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGc > 1:2142070/1‑93 (MQ=255)
tttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCa > 2:6064918/1‑93 (MQ=255)
gAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCatta < 2:529235/93‑1 (MQ=255)
gAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCatta > 2:5318103/1‑93 (MQ=255)
gAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCatta < 1:3765362/93‑1 (MQ=255)
gAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCatta < 2:1704865/93‑1 (MQ=255)
aCCAGAAAAGTTGCTGCAAATTGTCGGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCattatt < 1:3966750/93‑1 (MQ=255)
aCCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCattatt > 1:3850338/1‑93 (MQ=255)
aCCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCattatt > 2:2091954/1‑93 (MQ=255)
ccAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCAttatta < 2:4485048/93‑1 (MQ=255)
ccAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCAttatta > 2:1431684/1‑93 (MQ=255)
ccAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCAttatta > 1:1921460/1‑93 (MQ=255)
cAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCCCTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTaa < 1:1859142/93‑1 (MQ=255)
cAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTaa > 2:5728775/1‑93 (MQ=255)
cAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTaa < 2:4835062/93‑1 (MQ=255)
aGAAAAGGTGCTGCAAATTGTCCGGGAGGCGGTAGGCAGCTCAGCACTTTGCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAAt < 2:1549408/93‑1 (MQ=255)
aaaaGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGc < 1:2444610/93‑1 (MQ=255)
aaaaGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGc > 2:2003467/1‑93 (MQ=255)
aaaGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGcc > 1:5635809/1‑93 (MQ=255)
aGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCgg < 1:2954543/93‑1 (MQ=255)
gTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCgcg > 2:2480776/1‑91 (MQ=255)
ttGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCgggg > 1:4942456/1‑93 (MQ=255)
tgctgcAAATTGTCCTCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGgc < 1:3140817/93‑1 (MQ=255)
ctgcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGgcgc < 1:1359381/93‑1 (MQ=255)
ctgcAAATTGTCCGCGAGGCGGTAGGCAGCCCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGgcgc > 1:5923917/1‑93 (MQ=255)
gcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCAc > 2:2351725/1‑93 (MQ=255)
gcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCAc > 2:1260022/1‑93 (MQ=255)
gcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCAc < 1:1530372/93‑1 (MQ=255)
gaaaTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACt < 1:1898349/92‑1 (MQ=255)
cAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACt > 1:3408927/1‑93 (MQ=255)
aaaTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTc < 1:2250541/93‑1 (MQ=255)
aaaTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTc > 2:3837371/1‑93 (MQ=255)
aaTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTcc < 1:5910350/93‑1 (MQ=255)
aaTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTcc > 1:4691711/1‑93 (MQ=255)
ttGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCgg > 2:3138427/1‑93 (MQ=255)
tcgTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCgg < 1:1192746/91‑1 (MQ=255)
tGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCggg > 1:4987819/1‑93 (MQ=255)
gTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGc < 2:4805500/93‑1 (MQ=255)
tCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGcc > 2:6117223/1‑93 (MQ=255)
cgcgAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCAt > 2:291181/1‑93 (MQ=255)
cgcgAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCAt < 2:6042130/93‑1 (MQ=255)
gAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGCGCCATCga > 2:3948596/1‑92 (MQ=255)
ggTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCAcccc < 1:6064918/93‑1 (MQ=255)
gTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCg > 1:4145515/1‑93 (MQ=255)
tAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGc > 2:2771712/1‑93 (MQ=255)
tAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGc > 1:1467669/1‑93 (MQ=255)
aGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCt > 1:3741984/1‑93 (MQ=255)
aGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCt > 1:2363962/1‑93 (MQ=255)
gCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCttt < 1:5739279/93‑1 (MQ=255)
cAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTg < 2:4423277/93‑1 (MQ=255)
aGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTgg > 1:4294575/1‑93 (MQ=255)
gCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGc > 2:2265396/1‑93 (MQ=255)
cTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGca < 1:2824678/93‑1 (MQ=255)
|
TGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCA > NC_000913/1729339‑1729518
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TCCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAACA > NC_000913/1729336‑1729521
|
TCCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCA < SRR4302532.591058/94‑1 (MQ=60)
TCCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCA > SRR4302532.698105/1‑94 (MQ=60)
TCCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCA > SRR4302532.2113865/1‑94 (MQ=60)
TCCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTGGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCA < SRR4302532.591059/94‑1 (MQ=60)
CCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAG > SRR4302532.990238/1‑94 (MQ=60)
CTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGC > SRR4302532.3820011/1‑94 (MQ=60)
GACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCAC > SRR4302532.3122309/1‑94 (MQ=60)
GACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCAC > SRR4302532.36718/1‑94 (MQ=60)
GACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCAC > SRR4302532.242260/1‑94 (MQ=60)
GACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCAC > SRR4302532.5529879/1‑94 (MQ=60)
ACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACT < SRR4302532.3249511/94‑1 (MQ=60)
CCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTT < SRR4302532.3825047/94‑1 (MQ=60)
CGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTC > SRR4302532.5252597/1‑94 (MQ=60)
CGAGGGTAAATTGCCAGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTC < SRR4302532.3003456/94‑1 (MQ=60)
GATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCG < SRR4302532.5631111/94‑1 (MQ=60)
GATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCG > SRR4302532.5417807/1‑94 (MQ=60)
GATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCG < SRR4302532.444881/94‑1 (MQ=60)
TGGTAAATTGCCCGATGCGGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCC < SRR4302532.3838649/94‑1 (MQ=60)
TGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCC < SRR4302532.3633706/94‑1 (MQ=60)
TGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCC < SRR4302532.278323/94‑1 (MQ=60)
GGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCG < SRR4302532.5903991/94‑1 (MQ=60)
GTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGC > SRR4302532.797096/1‑94 (MQ=60)
TAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCC < SRR4302532.4847475/94‑1 (MQ=60)
AAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAATTTGCTGCAAGTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCC < SRR4302532.3161385/94‑1 (MQ=60)
AAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCC < SRR4302532.4652649/94‑1 (MQ=60)
AAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCC > SRR4302532.3358152/1‑94 (MQ=60)
TGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTT < SRR4302532.2342373/94‑1 (MQ=60)
CCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCG > SRR4302532.6163082/1‑94 (MQ=60)
CGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGC > SRR4302532.5547229/1‑94 (MQ=60)
CGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGC > SRR4302532.2258503/1‑94 (MQ=60)
ATGCCGCGATTTTTTTGTTTGAACCAGAAAACTTGCTGCAAATTGTCCGCGAGGCGCTAGGCAGCTCAGCACTTTTggaccacagttttcgcga > SRR4302532.3659797/1‑76 (MQ=60)
TGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAA > SRR4302532.4210581/1‑94 (MQ=60)
GCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAAT < SRR4302532.748174/94‑1 (MQ=60)
CCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGTCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATG < SRR4302532.3284859/94‑1 (MQ=60)
CCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATG > SRR4302532.94584/1‑94 (MQ=60)
CCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATG < SRR4302532.3759679/94‑1 (MQ=60)
CCGCGATTTTTTTGTTGGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATG < SRR4302532.4564758/94‑1 (MQ=60)
CGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGC < SRR4302532.4281027/94‑1 (MQ=60)
CGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGC < SRR4302532.2260952/94‑1 (MQ=60)
CGCGATTGTTTTGTGTGATCCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGC < SRR4302532.3026530/94‑1 (MQ=60)
GCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCG < SRR4302532.3753450/94‑1 (MQ=60)
GCGATTTTTTTGTTTGAACCAGAAAAGTTGCTACAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCCCCCGTTTTCGCGAATGCG > SRR4302532.1457663/1‑94 (MQ=60)
GATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGGGAGGCGGTAGGCAGCTCACCACTTTTCGCCGCCCGTTTTGGCGAATGGGCC > SRR4302532.3649586/1‑94 (MQ=60)
GATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCC > SRR4302532.1733057/1‑94 (MQ=60)
ATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCG > SRR4302532.6099920/1‑94 (MQ=60)
ATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCG > SRR4302532.752109/1‑94 (MQ=60)
TTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGC > SRR4302532.4689296/1‑94 (MQ=60)
TTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCG > SRR4302532.3269644/1‑94 (MQ=60)
TTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCG < SRR4302532.5705909/94‑1 (MQ=60)
TTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCG > SRR4302532.3095661/1‑94 (MQ=60)
TGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGC > SRR4302532.2213611/1‑94 (MQ=60)
TGTTTGAACCAGAAAAGTTGCTACAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGC > SRR4302532.2692526/1‑94 (MQ=60)
TTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCAT < SRR4302532.1920940/94‑1 (MQ=60)
TTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCAT > SRR4302532.5178396/1‑94 (MQ=60)
GAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTAT < SRR4302532.3892069/94‑1 (MQ=60)
GAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTAT < SRR4302532.4921573/94‑1 (MQ=60)
AACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATT > SRR4302532.3980346/1‑94 (MQ=60)
ACCAGAAAAGTTGCTGCAAATTGTCGGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTA < SRR4302532.4100389/94‑1 (MQ=60)
ACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTA > SRR4302532.1985364/1‑94 (MQ=60)
CAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCCCTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAAT < SRR4302532.1920776/94‑1 (MQ=60)
AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTAGCGAATGCGCCGCGCGGGCATTATTAATG < SRR4302532.1730951/94‑1 (MQ=60)
AAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCC > SRR4302532.42606/1‑94 (MQ=60)
AAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCC < SRR4302532.2525893/94‑1 (MQ=60)
AAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCC > SRR4302532.5831575/1‑94 (MQ=60)
AAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCG > SRR4302532.5923033/1‑94 (MQ=60)
AGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGG < SRR4302532.3052457/94‑1 (MQ=60)
GTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGG > SRR4302532.5112098/1‑94 (MQ=60)
TGCTGCAAATTGTCCTCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCG < SRR4302532.3245055/94‑1 (MQ=60)
GCTGCAAATTGTCCGCGAGGCGGTAGGCAGCCCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGC > SRR4302532.6129046/1‑94 (MQ=60)
CTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCA < SRR4302532.1404901/94‑1 (MQ=60)
CTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGACGGGGCGCA > SRR4302532.964499/1‑94 (MQ=60)
TCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACT < SRR4302532.3024284/94‑1 (MQ=60)
GCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACT < SRR4302532.1582074/94‑1 (MQ=60)
GCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACT > SRR4302532.3523091/1‑94 (MQ=60)
GAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTC < SRR4302532.1961298/94‑1 (MQ=60)
CAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTC > SRR4302532.2999906/1‑94 (MQ=60)
AAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCC > SRR4302532.4851735/1‑94 (MQ=60)
AAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCC < SRR4302532.2325251/94‑1 (MQ=60)
AAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCC > SRR4302532.391458/1‑94 (MQ=60)
AAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCC > SRR4302532.3843706/1‑94 (MQ=60)
AATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCG < SRR4302532.6115034/94‑1 (MQ=60)
TTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGG > SRR4302532.5158786/1‑94 (MQ=60)
TCGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGG < SRR4302532.1232626/94‑1 (MQ=60)
CGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATC < SRR4302532.2061350/94‑1 (MQ=60)
GGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCG < SRR4302532.6274361/94‑1 (MQ=60)
GGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCG > SRR4302532.4284598/1‑94 (MQ=60)
GTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGC > SRR4302532.4102174/1‑94 (MQ=60)
GTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGC > SRR4302532.1517113/1‑94 (MQ=60)
GTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGC > SRR4302532.4804142/1‑94 (MQ=60)
TAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCT > SRR4302532.3867741/1‑94 (MQ=60)
TAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCT > SRR4302532.2442822/1‑94 (MQ=60)
GGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTT > SRR4302532.4369683/1‑94 (MQ=60)
GCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTG < SRR4302532.5939094/94‑1 (MQ=60)
CAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGG > SRR4302532.4439605/1‑94 (MQ=60)
AGCTCAGCACTTTTAGCCGCCCGTTTTCGCGAATGCGACGCGCGGGCCTTATTAATGCCGGAGCGCACTCCGGGCCATCGCACGCCGCTTTaga > SRR4302532.3417056/1‑91 (MQ=60)
CTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAA < SRR4302532.2919176/94‑1 (MQ=60)
CAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAACA < SRR4302532.662191/94‑1 (MQ=60)
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TCCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAACA > NC_000913/1729336‑1729521
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
