Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,729,429 |
G→A |
S773S (TCG→TCA) |
lhr → |
Lhr |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,729,429 | 0 | G | A | 100.0%
| 820.0
/ NA
| 211 | S773S (TCG→TCA) | lhr | Lhr |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (124/87); total (124/87) |
Only 100 of 212 total aligned reads displayed.
TGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGC > NC_000913/1729339‑1729517
|
gACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCa > 2:5603108/1‑93 (MQ=255)
gACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCa > 2:2634057/1‑93 (MQ=255)
acacCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCAc < 1:5838325/93‑1 (MQ=255)
acacCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCAc > 1:3451334/1‑93 (MQ=255)
cacCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACt > 2:5997011/1‑93 (MQ=255)
acCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACtt > 2:1822469/1‑93 (MQ=255)
ccGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACttt < 1:6022733/93‑1 (MQ=255)
ccGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACttt < 1:1495517/93‑1 (MQ=255)
ccGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACttt < 1:2382948/93‑1 (MQ=255)
gATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTc < 1:817773/93‑1 (MQ=255)
gATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTc > 2:3139114/1‑93 (MQ=255)
gATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTc < 1:2449535/93‑1 (MQ=255)
ggTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgcc > 1:1650831/1‑93 (MQ=255)
tAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTcgccgc > 2:3334915/1‑93 (MQ=255)
aaaTTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCgccgcc < 2:6515068/93‑1 (MQ=255)
aaTTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGccc > 2:5677783/1‑93 (MQ=255)
ttGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGt > 1:5279228/1‑93 (MQ=255)
tGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGtt < 2:1481892/93‑1 (MQ=255)
gCCCGATGCCGTGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGttt > 1:2975580/1‑93 (MQ=255)
cccGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGtttt < 2:2826303/93‑1 (MQ=255)
ccGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTc < 1:1371266/93‑1 (MQ=255)
cGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTcg > 1:3304484/1‑93 (MQ=255)
gATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTcgc < 2:1825924/93‑1 (MQ=255)
gATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTcgc < 2:6374769/93‑1 (MQ=255)
gATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTcgc > 2:6223582/1‑93 (MQ=255)
aTGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTcgcg > 1:2614958/1‑93 (MQ=255)
gCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGaa > 2:3204402/1‑93 (MQ=255)
ccGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAAt < 1:2718558/93‑1 (MQ=255)
ccGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAAt > 1:6061056/1‑93 (MQ=255)
gcgATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATgc > 1:3837565/1‑93 (MQ=255)
cgATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATgcg < 2:186941/93‑1 (MQ=255)
aTTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGcgcc > 1:4921218/1‑93 (MQ=255)
aTTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGcgcc < 1:1043529/93‑1 (MQ=255)
aTTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGcgcc > 1:2536781/1‑93 (MQ=255)
aTTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGcgcc > 2:2380836/1‑93 (MQ=255)
tttttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGcgccg > 2:6410057/1‑93 (MQ=255)
ttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCcgcgc < 1:125335/93‑1 (MQ=255)
ttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCcgcgc < 1:4986477/93‑1 (MQ=255)
ttgtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCgg < 2:4842450/93‑1 (MQ=255)
ttgtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCgg > 1:5646282/1‑93 (MQ=255)
tgtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCggg > 2:4247661/1‑93 (MQ=255)
tgtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCggg > 1:5151601/1‑93 (MQ=255)
gtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGc > 2:5202287/1‑93 (MQ=255)
ttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCat > 2:3641307/1‑93 (MQ=255)
gAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCatta > 2:3515084/1‑93 (MQ=255)
gAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCatta < 1:981799/93‑1 (MQ=255)
aCCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCattatt < 2:1029511/93‑1 (MQ=255)
aCCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCattatt > 1:862205/1‑93 (MQ=255)
ccAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCAttatta > 1:2861921/1‑93 (MQ=255)
ccAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCAttatta > 2:2123181/1‑93 (MQ=255)
aGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAAt > 1:3556849/1‑93 (MQ=255)
aGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAAt < 1:463162/93‑1 (MQ=255)
aGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAAt > 2:3089387/1‑93 (MQ=255)
aaGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCg < 1:1172010/93‑1 (MQ=255)
aGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCgg < 2:1214324/93‑1 (MQ=255)
aGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCgg < 2:5260453/93‑1 (MQ=255)
aGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCgg < 2:4074383/93‑1 (MQ=255)
ttGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCgggg > 2:584305/1‑93 (MQ=255)
ttGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCgggg > 2:1244507/1‑93 (MQ=255)
ttGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCgggg > 2:228818/1‑93 (MQ=255)
ctgcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGgcgc < 2:1932593/93‑1 (MQ=255)
ctgcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGgcgc < 1:5890667/93‑1 (MQ=255)
ctgcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGgcgc > 1:1532757/1‑93 (MQ=255)
ctgcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGgcgc < 2:709468/93‑1 (MQ=255)
gcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCAc > 2:4583142/1‑93 (MQ=255)
gcAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCAc < 2:5408245/93‑1 (MQ=255)
cAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACt > 2:4369800/1‑93 (MQ=255)
aaTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTcc > 2:380218/1‑93 (MQ=255)
aaTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTcc > 1:4849746/1‑93 (MQ=255)
aaTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTcc < 1:6105433/93‑1 (MQ=255)
aaTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTcc > 1:5406079/1‑93 (MQ=255)
aTTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGTGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCg < 2:4663819/93‑1 (MQ=255)
ttGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCgg < 2:351697/93‑1 (MQ=255)
tGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCggg < 1:4256439/93‑1 (MQ=255)
gTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGc < 2:2925507/93‑1 (MQ=255)
tCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGcc < 2:5156442/93‑1 (MQ=255)
cgcgAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCAt < 2:492185/93‑1 (MQ=255)
gcgAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATc > 2:1143114/1‑93 (MQ=255)
gcgAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATc < 1:6451754/93‑1 (MQ=255)
cgAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCg > 2:2706469/1‑93 (MQ=255)
gAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGc > 1:656403/1‑93 (MQ=255)
aGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCa > 1:5218356/1‑93 (MQ=255)
aGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCa < 1:1415965/93‑1 (MQ=255)
gCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCAcc < 2:4093177/93‑1 (MQ=255)
gCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCAcc > 2:4212864/1‑93 (MQ=255)
gCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCAcc > 2:6640809/1‑93 (MQ=255)
cGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCAccc < 1:4582689/93‑1 (MQ=255)
cGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCAccc < 2:119640/93‑1 (MQ=255)
ggTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCAcccc < 2:1453414/93‑1 (MQ=255)
ggTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCAcccc < 1:2045179/93‑1 (MQ=255)
gTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCg > 2:944768/1‑93 (MQ=255)
tAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGc > 1:6274145/1‑93 (MQ=255)
ggCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCtt > 2:5495287/1‑93 (MQ=255)
gCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCttt > 2:4545761/1‑93 (MQ=255)
cAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTg > 2:3660472/1‑93 (MQ=255)
aGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGTCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTgg > 2:4439165/1‑93 (MQ=255)
aGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTgg > 2:2877026/1‑93 (MQ=255)
aGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTgg < 1:4896296/93‑1 (MQ=255)
gCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGc < 1:4491881/93‑1 (MQ=255)
gCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGc > 1:162728/1‑93 (MQ=255)
|
TGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGC > NC_000913/1729339‑1729517
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
CCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAACAA > NC_000913/1729337‑1729522
|
CCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAG > SRR4302547.966543/1‑94 (MQ=60)
CCTGACACCGATGGTAAATTGCCCGATGCCGAGATTTTTTTGTTTGACCC‑AGAAAAGTTGCTGAAAATTGTCCGCGAGGCGGTAGGCAGCTCAG < SRR4302547.2836298/94‑1 (MQ=60)
TGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCA > SRR4302547.4988538/1‑94 (MQ=60)
GACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCAC > SRR4302547.3521690/1‑94 (MQ=60)
ACAGCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGCGGCGGTAGGCAGCTCAGCACT < SRR4302547.676049/94‑1 (MQ=60)
ACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACT < SRR4302547.5959123/94‑1 (MQ=60)
CCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTT < SRR4302547.2431223/94‑1 (MQ=60)
CCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTT < SRR4302547.6147727/94‑1 (MQ=60)
CCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTT < SRR4302547.1525350/94‑1 (MQ=60)
GATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCG < SRR4302547.833304/94‑1 (MQ=60)
GATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCG < SRR4302547.2499032/94‑1 (MQ=60)
GATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTACGCGAGGCGGTAGGCAGCTCAGCACTTTTCG > SRR4302547.2067312/1‑94 (MQ=60)
TGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCC > SRR4302547.1683409/1‑94 (MQ=60)
GGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCG < SRR4302547.534026/94‑1 (MQ=60)
AAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCC < SRR4302547.6600499/94‑1 (MQ=60)
ATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGT > SRR4302547.5388124/1‑94 (MQ=60)
TGCCCGATGCCGTGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTT > SRR4302547.3034788/1‑94 (MQ=60)
TGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTT > SRR4302547.5537308/1‑94 (MQ=60)
CCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTC > SRR4302547.2582111/1‑94 (MQ=60)
CCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCG < SRR4302547.1367730/94‑1 (MQ=60)
CCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCG > SRR4302547.3371042/1‑94 (MQ=60)
CCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCG < SRR4302547.2446763/94‑1 (MQ=60)
CCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCG < SRR4302547.1398774/94‑1 (MQ=60)
GATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCG > SRR4302547.2667655/1‑94 (MQ=60)
GCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAAT > SRR4302547.6186779/1‑94 (MQ=60)
GCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAAT < SRR4302547.842211/94‑1 (MQ=60)
GCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAAT > SRR4302547.9402/1‑94 (MQ=60)
GCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAAT < SRR4302547.1490832/94‑1 (MQ=60)
CCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATG < SRR4302547.5134543/94‑1 (MQ=60)
CCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATG > SRR4302547.5992938/1‑94 (MQ=60)
CCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATG < SRR4302547.2773143/94‑1 (MQ=60)
CGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGC > SRR4302547.2280786/1‑94 (MQ=60)
CGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGC > SRR4302547.501913/1‑94 (MQ=60)
CGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGC > SRR4302547.3915731/1‑94 (MQ=60)
GCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCG < SRR4302547.5297813/94‑1 (MQ=60)
GATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCC > SRR4302547.2588037/1‑94 (MQ=60)
GATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCC > SRR4302547.5023137/1‑94 (MQ=60)
ATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCG < SRR4302547.1064123/94‑1 (MQ=60)
TTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGC < SRR4302547.168236/94‑1 (MQ=60)
TTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCG < SRR4302547.127609/94‑1 (MQ=60)
TTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCG > SRR4302547.395767/1‑94 (MQ=60)
TTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCG < SRR4302547.5089580/94‑1 (MQ=60)
TTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGG > SRR4302547.5914756/1‑94 (MQ=60)
TTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGG > SRR4302547.5762829/1‑94 (MQ=60)
TTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGG > SRR4302547.3587264/1‑94 (MQ=60)
TTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGG > SRR4302547.5257707/1‑94 (MQ=60)
TGGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGG < SRR4302547.6346467/94‑1 (MQ=60)
TTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCAT > SRR4302547.1678255/1‑94 (MQ=60)
TGGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATT < SRR4302547.336034/94‑1 (MQ=60)
GAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTAT < SRR4302547.1000901/94‑1 (MQ=60)
GAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTAT > SRR4302547.2920357/1‑94 (MQ=60)
ggaccataaacgttgctacaagttggcgGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTAT < SRR4302547.6488777/66‑1 (MQ=60)
AACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATT > SRR4302547.878685/1‑94 (MQ=60)
AACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATT > SRR4302547.2735317/1‑94 (MQ=60)
ACCTAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATT < SRR4302547.1275328/94‑1 (MQ=60)
ACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTA > SRR4302547.2919093/1‑94 (MQ=60)
CC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAA > SRR4302547.4928999/1‑94 (MQ=60)
CC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAA > SRR4302547.6225829/1‑94 (MQ=60)
C‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAAT > SRR4302547.3629439/1‑94 (MQ=60)
C‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAAT > SRR4302547.785021/1‑94 (MQ=60)
AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATG < SRR4302547.471715/94‑1 (MQ=60)
GAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGC < SRR4302547.4702482/94‑1 (MQ=60)
AAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGC < SRR4302547.5013307/94‑1 (MQ=60)
AAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGG < SRR4302547.1195699/94‑1 (MQ=60)
AGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGG < SRR4302547.3375267/94‑1 (MQ=60)
GCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGC > SRR4302547.1563272/1‑94 (MQ=60)
CTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCA < SRR4302547.6012622/94‑1 (MQ=60)
CAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTC > SRR4302547.4581810/1‑94 (MQ=60)
CAAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTC < SRR4302547.2657927/94‑1 (MQ=60)
AAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCC > SRR4302547.4950249/1‑94 (MQ=60)
AAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCC > SRR4302547.5395793/1‑94 (MQ=60)
AAATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCC > SRR4302547.5517844/1‑94 (MQ=60)
AATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCG < SRR4302547.109456/94‑1 (MQ=60)
AATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCG < SRR4302547.6232081/94‑1 (MQ=60)
ATTGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGG > SRR4302547.5881758/1‑94 (MQ=60)
TGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGC < SRR4302547.4887440/94‑1 (MQ=60)
TGTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGC < SRR4302547.4343534/94‑1 (MQ=60)
GTCCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCC > SRR4302547.156148/1‑94 (MQ=60)
CCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCAT > SRR4302547.1411240/1‑94 (MQ=60)
CCGCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCAT > SRR4302547.6081727/1‑94 (MQ=60)
GCGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCA < SRR4302547.6586160/94‑1 (MQ=60)
CGAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC > SRR4302547.668491/1‑94 (MQ=60)
GAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCA > SRR4302547.5325765/1‑94 (MQ=60)
GAGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCA > SRR4302547.4623436/1‑94 (MQ=60)
AGGCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCAC < SRR4302547.1444306/94‑1 (MQ=60)
GCGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCC < SRR4302547.6163548/94‑1 (MQ=60)
CGGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCC < SRR4302547.4677531/94‑1 (MQ=60)
GGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCG > SRR4302547.3737669/1‑94 (MQ=60)
GGTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCG < SRR4302547.2085973/94‑1 (MQ=60)
GTAGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGC > SRR4302547.6404478/1‑94 (MQ=60)
AGGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTT > SRR4302547.6422358/1‑94 (MQ=60)
GGCAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACACCGCTTT > SRR4302547.1547292/1‑94 (MQ=60)
CAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGG < SRR4302547.2917157/94‑1 (MQ=60)
CAGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCCCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGG > SRR4302547.3262019/1‑94 (MQ=60)
AGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGC < SRR4302547.4997694/94‑1 (MQ=60)
AGCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGC > SRR4302547.165714/1‑94 (MQ=60)
GCTCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCA < SRR4302547.4584670/94‑1 (MQ=60)
TCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAAC > SRR4302547.4598312/1‑94 (MQ=60)
TCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAAC < SRR4302547.6433782/94‑1 (MQ=60)
TCAGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAAC > SRR4302547.4480508/1‑94 (MQ=60)
AGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAACAA < SRR4302547.1079384/94‑1 (MQ=60)
AGCACTTTTCGCCGCCCGTTCTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAACAA < SRR4302547.2734610/94‑1 (MQ=60)
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CCTGACACCGATGGTAAATTGCCCGATGCCGCGATTTTTTTGTTTGAACC‑AGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGCACCCCGCTTTGGCAACAA > NC_000913/1729337‑1729522
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 7 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
