Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
521 |
238.2 |
12299412 |
96.0% |
11807435 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,815,038 |
T→C |
Q41R (CAG→CGG) |
ydjC ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,815,038 | 0 | T | C | 97.8%
| 618.7
/ ‑0.4
| 181 | Q41R (CAG→CGG) | ydjC | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/3); new base C (86/91); total (87/94) |
| Fisher's exact test for biased strand distribution p-value = 6.22e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 |
Only 100 of 195 total aligned reads displayed.
GTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAA > NC_000913/1814948‑1815127
|
tCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGcc < 1:5223738/93‑1 (MQ=255)
aGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCa < 2:1825997/93‑1 (MQ=255)
gTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGAACCGCATGGTCAATAGCCCGCCCAt > 2:4298941/1‑93 (MQ=255)
ggCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTc < 2:2209327/93‑1 (MQ=255)
ttACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCAcc < 1:1001380/93‑1 (MQ=255)
ttACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCAcc > 1:1341936/1‑93 (MQ=255)
ttACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCAcc < 2:5303386/93‑1 (MQ=255)
tACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCa < 2:3546584/93‑1 (MQ=255)
aCCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAg < 1:4407246/93‑1 (MQ=255)
cccATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAgc > 1:4674683/1‑93 (MQ=255)
cccATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCACGCCCATTCACAAgc > 2:1976642/1‑93 (MQ=255)
ccATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAgcg < 1:1265769/93‑1 (MQ=255)
cATAGTAAGGACAAAGTGCATCCCTATGGCCAGAATCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCACATTCACCAgcgc < 1:4491974/93‑1 (MQ=255)
tAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTGACCAGCGCcg > 1:3948583/1‑93 (MQ=255)
tAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcg > 2:3277540/1‑93 (MQ=255)
tAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcg > 2:2183992/1‑93 (MQ=255)
aGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgt < 2:1454671/93‑1 (MQ=255)
gTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgtc < 2:1431894/93‑1 (MQ=255)
tAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTTATCACGACTCAACTGCACCGCATGGTCAACAGCCCGCCCATTCACCAGCGCcggcg > 1:209694/1‑93 (MQ=255)
tAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgtcg > 2:4234038/1‑93 (MQ=255)
aaGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgtcgt < 2:3178390/93‑1 (MQ=255)
aaGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgtcgc > 2:5830672/1‑92 (MQ=255)
cAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACg > 1:2747525/1‑93 (MQ=255)
cAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACg > 2:1048197/1‑93 (MQ=255)
aaaGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGt < 2:4128632/93‑1 (MQ=255)
gTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGAc > 2:3065110/1‑93 (MQ=255)
gCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACaa < 2:5755661/93‑1 (MQ=255)
gCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACaa < 2:3817221/93‑1 (MQ=255)
gCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACaa > 2:4643427/1‑93 (MQ=255)
gCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACaa < 2:1806463/93‑1 (MQ=255)
aTCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATc < 2:1740566/93‑1 (MQ=255)
tCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATcc > 2:644349/1‑93 (MQ=255)
tCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATcc > 1:2955246/1‑93 (MQ=255)
tCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATcc < 2:4688390/93‑1 (MQ=255)
tCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATcc > 2:3347423/1‑93 (MQ=255)
ccTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCNCNGTCGTCGACGTGACAATCCCa > 2:1940917/1‑93 (MQ=255)
ccTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCa > 1:5423712/1‑93 (MQ=255)
ccTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCa > 2:4793867/1‑93 (MQ=255)
cTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAt < 1:5539003/93‑1 (MQ=255)
cTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAt < 2:3989604/93‑1 (MQ=255)
cTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAt < 1:1914930/93‑1 (MQ=255)
tATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAtt > 2:729777/1‑93 (MQ=255)
tATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAtt > 2:1636141/1‑93 (MQ=255)
aTGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTg < 1:4345266/93‑1 (MQ=255)
tGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGc < 2:1142806/93‑1 (MQ=255)
tGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGc > 1:1657169/1‑93 (MQ=255)
tGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGc < 1:4966503/93‑1 (MQ=255)
tGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGc > 2:3682948/1‑93 (MQ=255)
ggCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTTGACGTGACAATCCCATTGCg > 1:6027565/1‑93 (MQ=255)
cAGACTCGGTTCATCACGACTCAACTGCAACGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACa < 2:2212065/93‑1 (MQ=255)
gACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAgg < 1:2383997/93‑1 (MQ=255)
aCTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGc > 2:4386511/1‑93 (MQ=255)
aCTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGc > 1:2606054/1‑93 (MQ=255)
cTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACNTNACAATCCCATNGCGACAggac > 2:5713127/1‑91 (MQ=255)
tCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGcat > 2:1603130/1‑91 (MQ=255)
tCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCt < 2:1220472/93‑1 (MQ=255)
cGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTc > 1:101676/1‑93 (MQ=255)
ggTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCg > 1:2054986/1‑93 (MQ=255)
gTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGa < 1:1197279/93‑1 (MQ=255)
gTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGa > 2:5250889/1‑93 (MQ=255)
ttCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGAt < 1:4292078/93‑1 (MQ=255)
ttCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGAt < 2:3728834/93‑1 (MQ=255)
ttCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGAt < 1:586212/93‑1 (MQ=255)
atcaCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAAt < 2:203138/93‑1 (MQ=255)
atcaCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAAt < 2:4180268/93‑1 (MQ=255)
atcaCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAAt < 2:3317449/93‑1 (MQ=255)
caCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGc > 2:5954840/1‑93 (MQ=255)
cGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCg < 1:2668257/93‑1 (MQ=255)
gcTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTa < 2:2076150/92‑1 (MQ=255)
cTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAg < 1:74983/93‑1 (MQ=255)
tCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGt < 2:3239102/93‑1 (MQ=255)
tCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGt > 2:1173768/1‑93 (MQ=255)
tCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGt < 1:3275742/93‑1 (MQ=255)
aaCTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTc < 2:6012109/93‑1 (MQ=255)
aaCTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTc < 2:2380793/93‑1 (MQ=255)
aaCCGCTCCGAATGGACAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTc < 2:1921055/93‑1 (MQ=255)
aCTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCt < 1:930024/93‑1 (MQ=255)
aCTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCt > 2:2814906/1‑93 (MQ=255)
cTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTg > 1:3131754/1‑93 (MQ=255)
tGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGa > 1:890610/1‑93 (MQ=255)
tGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGa > 1:792907/1‑93 (MQ=255)
aCCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCt > 2:6144853/1‑93 (MQ=255)
ccGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCtt < 2:2646445/93‑1 (MQ=255)
cGCATGGTGAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCttt < 2:5102807/93‑1 (MQ=255)
cGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCttt > 1:1298023/1‑93 (MQ=255)
cGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCttt < 1:2532165/93‑1 (MQ=255)
cGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCttt < 2:4966848/93‑1 (MQ=255)
cGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCttt > 2:2270457/1‑93 (MQ=255)
cATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGc < 1:5404009/93‑1 (MQ=255)
aTGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCt > 1:5464624/1‑93 (MQ=255)
aTGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCt < 2:4071526/93‑1 (MQ=255)
tGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAAGCCTCGATAATGCCGTAGTTCTGACCTTTGCtt > 2:5931005/1‑93 (MQ=255)
tGGACAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCtt < 1:4748873/93‑1 (MQ=255)
gTCAATAGCCCGCCCATTCTCCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTaa < 2:839895/93‑1 (MQ=255)
aaTAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGcc > 1:2192094/1‑93 (MQ=255)
aaTAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGcc < 1:3547987/93‑1 (MQ=255)
aTAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCa < 1:3477230/93‑1 (MQ=255)
aGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGCTAATGCCGTAGTTCTGACCTTTTCTTAAGCCaaa > 1:2184957/1‑93 (MQ=255)
gcccgcccATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCaaaa < 1:1037369/93‑1 (MQ=255)
gCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTCACCTTTGCTTAAGCCaaaa > 1:6081160/1‑93 (MQ=255)
|
GTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAA > NC_000913/1814948‑1815127
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
GCTGTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCAT > NC_000913/1814945‑1815131
|
GCTGTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCC < SRR4302532.1091748/94‑1 (MQ=60)
GCTGTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCC > SRR4302532.3162777/1‑94 (MQ=60)
TGTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGC < SRR4302532.2678447/94‑1 (MQ=60)
TCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCC < SRR4302532.5403888/94‑1 (MQ=60)
CAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACAGCATGGTGAATAGCCCGCCCA > SRR4302532.263463/1‑94 (MQ=60)
GTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATT < SRR4302532.5201076/94‑1 (MQ=60)
GGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCA < SRR4302532.447096/94‑1 (MQ=60)
CTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACC > SRR4302532.1386808/1‑94 (MQ=60)
atgaaccgagtctGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCA > SRR4302532.1799137/14‑94 (MQ=60)
TTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCA < SRR4302532.1035466/94‑1 (MQ=60)
ACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGC < SRR4302532.4557357/94‑1 (MQ=60)
ACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGC > SRR4302532.4834078/1‑94 (MQ=60)
CCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGC < SRR4302532.1308108/94‑1 (MQ=60)
CATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCC > SRR4302532.3011060/1‑94 (MQ=60)
CATAGTAAGGACAAAGTGCATCCCTATGGCCAGAATCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCACATTCACCAGCGCC < SRR4302532.4645319/94‑1 (MQ=60)
ATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTGACCAGCGCCG > SRR4302532.4081672/1‑94 (MQ=60)
AGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTC > SRR4302532.131966/1‑94 (MQ=60)
AGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTC < SRR4302532.4842411/94‑1 (MQ=60)
AGGAAGGACAAAGTGCATCCCTATGGCCAGCCTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTC < SRR4302532.2107059/94‑1 (MQ=60)
GTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTTATCACGACTCAACTGCACCGCATGGTCAACAGCCCGCCCATTCACCAGCGCCGGCG > SRR4302532.216850/1‑94 (MQ=60)
GTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCG > SRR4302532.1247362/1‑94 (MQ=60)
GACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGAC < SRR4302532.6056040/94‑1 (MQ=60)
ACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACG < SRR4302532.6086336/94‑1 (MQ=60)
ACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACG > SRR4302532.2839800/1‑94 (MQ=60)
CATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATC > SRR4302532.2581457/1‑94 (MQ=60)
ATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCC > SRR4302532.3053182/1‑94 (MQ=60)
ATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCC < SRR4302532.4598043/94‑1 (MQ=60)
TCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCA > SRR4302532.5424767/1‑94 (MQ=60)
CCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCA > SRR4302532.5611697/1‑94 (MQ=60)
CTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATT < SRR4302532.5731245/94‑1 (MQ=60)
CTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATT < SRR4302532.4649682/94‑1 (MQ=60)
CTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATT > SRR4302532.1072265/1‑94 (MQ=60)
CTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATT < SRR4302532.1978586/94‑1 (MQ=60)
CTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATT < SRR4302532.5615761/94‑1 (MQ=60)
TATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTG > SRR4302532.2137262/1‑94 (MQ=60)
ATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGC < SRR4302532.4492084/94‑1 (MQ=60)
ATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGC > SRR4302532.1713326/1‑94 (MQ=60)
TGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTTGACGTGACAATCCCATTGCG > SRR4302532.6235746/1‑94 (MQ=60)
TGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCG < SRR4302532.5136800/94‑1 (MQ=60)
CCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACA > SRR4302532.6247457/1‑94 (MQ=60)
CAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAG > SRR4302532.5595430/1‑94 (MQ=60)
AGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCACATTGCGACAGG > SRR4302532.953961/1‑94 (MQ=60)
GACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGC > SRR4302532.2693212/1‑94 (MQ=60)
GACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGC < SRR4302532.2463420/94‑1 (MQ=60)
TCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTC > SRR4302532.105204/1‑94 (MQ=60)
CGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCG < SRR4302532.1093549/94‑1 (MQ=60)
CGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCG > SRR4302532.2123413/1‑94 (MQ=60)
CGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCG > SRR4302532.814187/1‑94 (MQ=60)
CGGTTCATCACGACTCAACTCCACCGAATGGTCAATAGCCCGCCCCTTCACCAGCGCCGTCGTCCACGTGGCAATCCCATTGCAACAGGCCTCG < SRR4302532.1791436/94‑1 (MQ=60)
GGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGA > SRR4302532.2328469/1‑94 (MQ=60)
GTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCTATTGCGACAGGCCTCGAT < SRR4302532.2788839/94‑1 (MQ=60)
GTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGAT < SRR4302532.1237311/94‑1 (MQ=60)
GTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGAT < SRR4302532.2204857/94‑1 (MQ=60)
GTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGAT > SRR4302532.1386193/1‑94 (MQ=60)
TTCATCACGACTCAGCTGCACCGCAGGGACAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATA < SRR4302532.3281283/94‑1 (MQ=60)
TTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATA < SRR4302532.4436977/94‑1 (MQ=60)
TTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATA < SRR4302532.163548/94‑1 (MQ=60)
TTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATA < SRR4302532.606665/94‑1 (MQ=60)
ACCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATG < SRR4302532.2921604/94‑1 (MQ=60)
CCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCG < SRR4302532.2738937/94‑1 (MQ=60)
CGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATcacga > SRR4302532.1166647/1‑89 (MQ=60)
CGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGT < SRR4302532.2757816/94‑1 (MQ=60)
ACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGGCACAATCCCATTGCGACACGCCTCGATAATGCCGTAG > SRR4302532.4524848/1‑94 (MQ=60)
CTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGT > SRR4302532.688047/1‑94 (MQ=60)
CTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGT < SRR4302532.77667/94‑1 (MQ=60)
CTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGT < SRR4302532.5068330/94‑1 (MQ=60)
TCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTT < SRR4302532.3384678/94‑1 (MQ=60)
ACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTG < SRR4302532.961883/94‑1 (MQ=60)
ACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTG > SRR4302532.3235718/1‑94 (MQ=60)
CTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGA > SRR4302532.3973655/1‑94 (MQ=60)
CTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGA > SRR4302532.921039/1‑94 (MQ=60)
CTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGA > SRR4302532.820042/1‑94 (MQ=60)
CACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCT < SRR4302532.3634830/94‑1 (MQ=60)
CCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCTTCGTCGACGTGACAATCCCATTGCGACAGGCGTCGATAATGCCGTAGTTCTGACCTTG > SRR4302532.3139277/1‑94 (MQ=60)
CCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTT > SRR4302532.1341477/1‑94 (MQ=60)
CGCATGGTCAATAGCCCGCCTATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTG < SRR4302532.3338209/94‑1 (MQ=60)
CGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTG < SRR4302532.2616649/94‑1 (MQ=60)
CGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTG < SRR4302532.4209105/94‑1 (MQ=60)
CATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCT > SRR4302532.5654084/1‑94 (MQ=60)
CATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCT < SRR4302532.5591236/94‑1 (MQ=60)
ATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTT > SRR4302532.2264765/1‑94 (MQ=60)
TGGACAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTA < SRR4302532.4911184/94‑1 (MQ=60)
GGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAA < SRR4302532.994247/94‑1 (MQ=60)
CAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCC > SRR4302532.2265143/1‑94 (MQ=60)
CAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCC > SRR4302532.5705302/1‑94 (MQ=60)
CAATAGCCCGCCCATTCAACAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCC > SRR4302532.4501876/1‑94 (MQ=60)
AATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCA < SRR4302532.3666705/94‑1 (MQ=60)
ATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAA < SRR4302532.3593704/94‑1 (MQ=60)
TAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGCTAATGCCGTAGTTCTGACCTTTTCTTAAGCCAAA > SRR4302532.2257850/1‑94 (MQ=60)
AGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTCACCTTTGCTTAAGCCAAAA > SRR4302532.6291152/1‑94 (MQ=60)
GCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAAT < SRR4302532.3101949/94‑1 (MQ=60)
GCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAAT < SRR4302532.1072368/94‑1 (MQ=60)
CCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCA > SRR4302532.6242346/1‑94 (MQ=60)
CCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCA < SRR4302532.1588061/94‑1 (MQ=60)
CGCCCATGCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCAT < SRR4302532.4438229/94‑1 (MQ=60)
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GCTGTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCAT > NC_000913/1814945‑1815131
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 2 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
