Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
593 |
264.2 |
13311096 |
97.8% |
13018251 |
93.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
1,815,038 |
T→C |
Q41R (CAG→CGG) |
ydjC ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,815,038 | 0 | T | C | 100.0%
| 747.7
/ NA
| 206 | Q41R (CAG→CGG) | ydjC | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (92/114); total (92/114) |
Only 100 of 211 total aligned reads displayed.
GTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAA > NC_000913/1814948‑1815127
|
gTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGc > 1:852236/1‑93 (MQ=255)
tCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGcc > 2:3227621/1‑93 (MQ=255)
ggCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTc > 1:4907919/1‑93 (MQ=255)
ggCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTc < 1:3794159/93‑1 (MQ=255)
ttACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCAcc < 2:2457745/93‑1 (MQ=255)
tACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCa < 2:4028935/93‑1 (MQ=255)
aCCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAg < 2:1060025/93‑1 (MQ=255)
aGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGTTCAATAGCCCGCCCATTCACCAGCGCcgt < 2:3872200/93‑1 (MQ=255)
aGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgt < 2:5141858/93‑1 (MQ=255)
aGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgt < 1:3020593/93‑1 (MQ=255)
gTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgtc > 2:4472202/1‑93 (MQ=255)
gTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgtc < 1:6034976/93‑1 (MQ=255)
gTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgtc > 1:2937563/1‑93 (MQ=255)
tAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgtcg < 2:2116059/93‑1 (MQ=255)
aaGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCcgtcgt < 2:5824506/93‑1 (MQ=255)
ggACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGtcgtcg > 2:4979251/1‑93 (MQ=255)
gACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGa < 2:4099678/93‑1 (MQ=255)
gACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGa > 2:1145582/1‑93 (MQ=255)
gACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGa < 2:3602300/93‑1 (MQ=255)
gACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGa < 2:2192381/93‑1 (MQ=255)
cAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACg > 2:3055088/1‑93 (MQ=255)
aaGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTg > 1:6631134/1‑93 (MQ=255)
cATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAAt < 1:4958439/93‑1 (MQ=255)
aTCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATc > 2:3268734/1‑93 (MQ=255)
aTCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATc > 2:3392141/1‑93 (MQ=255)
tCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATcc < 1:5836758/93‑1 (MQ=255)
tCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATcc > 1:4377390/1‑93 (MQ=255)
cTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAt > 2:659928/1‑93 (MQ=255)
cTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAt < 2:5440097/93‑1 (MQ=255)
cTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAt < 2:1712027/93‑1 (MQ=255)
tATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAtt < 1:6622183/93‑1 (MQ=255)
tATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCAtt > 2:323645/1‑93 (MQ=255)
ggCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCg > 2:3636270/1‑93 (MQ=255)
ccAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGAc < 2:6642071/93‑1 (MQ=255)
cAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACa > 1:1298204/1‑93 (MQ=255)
cAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACa > 1:3144883/1‑93 (MQ=255)
aGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAg < 1:5435936/93‑1 (MQ=255)
aGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAg < 2:1570232/93‑1 (MQ=255)
gACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAgg > 2:1942103/1‑93 (MQ=255)
gACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAgg > 1:2582439/1‑93 (MQ=255)
gACTCGGGTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGAGACAgg > 1:4414441/1‑93 (MQ=255)
aCTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGc < 1:4116825/93‑1 (MQ=255)
cTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGcc > 2:1913299/1‑93 (MQ=255)
cTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGcc < 1:1139032/93‑1 (MQ=255)
cTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGcc < 1:2697794/93‑1 (MQ=255)
tCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCt < 2:670898/93‑1 (MQ=255)
cGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTc < 2:834398/93‑1 (MQ=255)
cGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTc < 1:3188839/93‑1 (MQ=255)
ggTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCg < 1:2778933/93‑1 (MQ=255)
gTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGa < 1:94920/93‑1 (MQ=255)
gTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGa > 2:4253200/1‑93 (MQ=255)
ttCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGCCAATCCCATTGCGACAGGCCTCGAt < 1:4748083/93‑1 (MQ=255)
ttCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGAt < 2:2979200/93‑1 (MQ=255)
tcatcaCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATa < 1:6131200/93‑1 (MQ=255)
catcaCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATaa > 1:2113592/1‑93 (MQ=255)
catcaCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATaa > 2:5715066/1‑93 (MQ=255)
atcaCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAAt > 1:4486210/1‑93 (MQ=255)
tcaCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATg > 1:6575882/1‑93 (MQ=255)
caCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGc < 2:5964007/93‑1 (MQ=255)
aCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGcc < 2:6261569/93‑1 (MQ=255)
aCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGcc > 2:4691430/1‑93 (MQ=255)
gACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGt > 2:1348487/1‑93 (MQ=255)
gACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGt < 2:540478/93‑1 (MQ=255)
gACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGt > 2:1232053/1‑93 (MQ=255)
gACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGt < 2:6141016/93‑1 (MQ=255)
gACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGt < 1:4138033/93‑1 (MQ=255)
aCTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTa > 1:2870801/1‑93 (MQ=255)
aCTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTa < 2:4562072/93‑1 (MQ=255)
aCTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTa > 2:2593296/1‑93 (MQ=255)
aCTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTa < 1:646341/93‑1 (MQ=255)
aCTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTa > 2:852405/1‑93 (MQ=255)
cTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAg > 2:791959/1‑93 (MQ=255)
cTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAg < 1:2456991/93‑1 (MQ=255)
cAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGtt > 2:2408898/1‑93 (MQ=255)
cAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGtt > 2:6467763/1‑93 (MQ=255)
aCTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCt > 2:6345667/1‑93 (MQ=255)
aCTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCt < 1:893717/93‑1 (MQ=255)
aCTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCt < 1:6510661/93‑1 (MQ=255)
cTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTg > 2:1338894/1‑93 (MQ=255)
cTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTg > 1:4811606/1‑93 (MQ=255)
gCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGAc < 2:5498575/93‑1 (MQ=255)
cACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGAcc < 1:2254228/93‑1 (MQ=255)
cACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGAcc < 1:2419757/93‑1 (MQ=255)
gccGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCt < 2:3976613/92‑1 (MQ=255)
ccGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCtt < 2:1668225/93‑1 (MQ=255)
ccGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCtt > 1:6161286/1‑93 (MQ=255)
ccGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCtt > 2:2213486/1‑93 (MQ=255)
cGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCttt < 1:4637531/93‑1 (MQ=255)
cATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCtttac < 2:3211346/93‑3 (MQ=255)
cATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGc > 1:1787866/1‑93 (MQ=255)
tGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCtt > 1:3972204/1‑93 (MQ=255)
tGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCtt > 1:2304578/1‑93 (MQ=255)
tGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCtt > 2:4414242/1‑93 (MQ=255)
ggTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTa < 2:4870664/93‑1 (MQ=255)
tCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAg < 1:1490704/93‑1 (MQ=255)
aTAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCa < 1:1104219/93‑1 (MQ=255)
aTAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCa > 2:3526834/1‑93 (MQ=255)
tAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCaa < 1:4542328/93‑1 (MQ=255)
tAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCaa < 1:5118196/93‑1 (MQ=255)
gcccgcccATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCaaaa < 2:5988958/93‑1 (MQ=255)
|
GTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAA > NC_000913/1814948‑1815127
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
BRESEQ :: bam2aln output
TGTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCAT > NC_000913/1814947‑1815131
|
TGTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGC > SRR4302547.868507/1‑94 (MQ=60)
TCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCC < SRR4302547.6258856/94‑1 (MQ=60)
GTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATT < SRR4302547.4393077/94‑1 (MQ=60)
TGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTC > SRR4302547.5009554/1‑94 (MQ=60)
GGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCC < SRR4302547.3914682/94‑1 (MQ=60)
GGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCA < SRR4302547.3871513/94‑1 (MQ=60)
GCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCAC < SRR4302547.1159354/94‑1 (MQ=60)
TACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAG > SRR4302547.5029437/1‑94 (MQ=60)
CCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCG < SRR4302547.2596284/94‑1 (MQ=60)
ATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCG > SRR4302547.2809416/1‑94 (MQ=60)
ATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCG > SRR4302547.2025149/1‑94 (MQ=60)
TAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGT < SRR4302547.874258/94‑1 (MQ=60)
AGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTC > SRR4302547.2996100/1‑94 (MQ=60)
AGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTC < SRR4302547.3080661/94‑1 (MQ=60)
GTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCG < SRR4302547.6160211/94‑1 (MQ=60)
AAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTC < SRR4302547.4903808/94‑1 (MQ=60)
AAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTC > SRR4302547.4213763/1‑94 (MQ=60)
AAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTC > SRR4302547.4711113/1‑94 (MQ=60)
AGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCG > SRR4302547.866159/1‑94 (MQ=60)
CAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGT > SRR4302547.4762331/1‑94 (MQ=60)
AAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTG > SRR4302547.6769171/1‑94 (MQ=60)
AAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTG > SRR4302547.2637182/1‑94 (MQ=60)
AGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGAC > SRR4302547.4500834/1‑94 (MQ=60)
GTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACA < SRR4302547.6764698/94‑1 (MQ=60)
CATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATC < SRR4302547.5061049/94‑1 (MQ=60)
ATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCC > SRR4302547.4467359/1‑94 (MQ=60)
TCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCC < SRR4302547.5957529/94‑1 (MQ=60)
CCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCA > SRR4302547.3160830/1‑94 (MQ=60)
TATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTG < SRR4302547.6760026/94‑1 (MQ=60)
TATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTG < SRR4302547.174959/94‑1 (MQ=60)
TATGCCCAGACTCGGTTCATCACGACTCAACTACACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTG < SRR4302547.1310552/94‑1 (MQ=60)
ATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGC > SRR4302547.4923525/1‑94 (MQ=60)
TGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCG > SRR4302547.962417/1‑94 (MQ=60)
TGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCG < SRR4302547.5130595/94‑1 (MQ=60)
GGCCAGACTCGGTTAATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGA > SRR4302547.6668846/1‑94 (MQ=60)
CCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACA > SRR4302547.5788386/1‑94 (MQ=60)
CCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACA > SRR4302547.3207372/1‑94 (MQ=60)
CCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACA > SRR4302547.1324337/1‑94 (MQ=60)
CAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAG < SRR4302547.2948954/94‑1 (MQ=60)
AGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGG < SRR4302547.5548290/94‑1 (MQ=60)
AGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGG > SRR4302547.2634558/1‑94 (MQ=60)
AGACTCGGGTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGAGACAGG > SRR4302547.4505490/1‑94 (MQ=60)
GACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGC > SRR4302547.5303129/1‑94 (MQ=60)
GCTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCC < SRR4302547.6329897/94‑1 (MQ=60)
ACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCC < SRR4302547.4200497/94‑1 (MQ=60)
ACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCC < SRR4302547.3007538/94‑1 (MQ=60)
CTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCT < SRR4302547.2493868/94‑1 (MQ=60)
CTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCT < SRR4302547.1162037/94‑1 (MQ=60)
CTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCT < SRR4302547.2751952/94‑1 (MQ=60)
CTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCA < SRR4302547.2840076/94‑1 (MQ=60)
TCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTC < SRR4302547.4548007/94‑1 (MQ=60)
CGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCG < SRR4302547.3252388/94‑1 (MQ=60)
GGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGA < SRR4302547.6744818/94‑1 (MQ=60)
GGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGA < SRR4302547.2834611/94‑1 (MQ=60)
GGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGA > SRR4302547.2253483/1‑94 (MQ=60)
GTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGAT < SRR4302547.96688/94‑1 (MQ=60)
GTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGAT < SRR4302547.252951/94‑1 (MQ=60)
TTCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGCCAATCCCATTGCGACAGGCCTCGATA < SRR4302547.4846470/94‑1 (MQ=60)
TCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAA > SRR4302547.2155702/1‑94 (MQ=60)
TCATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAA < SRR4302547.6258376/94‑1 (MQ=60)
CATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAAT > SRR4302547.6614659/1‑94 (MQ=60)
CATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAAT > SRR4302547.4578879/1‑94 (MQ=60)
ATCACGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATG > SRR4302547.6712791/1‑94 (MQ=60)
CGCGACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCC < SRR4302547.323524/94‑1 (MQ=60)
GACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTA < SRR4302547.4222226/94‑1 (MQ=60)
GACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTA > SRR4302547.2379716/1‑94 (MQ=60)
GACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTA > SRR4302547.2928138/1‑94 (MQ=60)
ACTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAG < SRR4302547.658259/94‑1 (MQ=60)
CTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGT < SRR4302547.2506645/94‑1 (MQ=60)
CTCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGT > SRR4302547.61895/1‑94 (MQ=60)
TCAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTT > SRR4302547.3270681/1‑94 (MQ=60)
CAACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTC > SRR4302547.2344293/1‑94 (MQ=60)
ACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTG < SRR4302547.910901/94‑1 (MQ=60)
ACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTG < SRR4302547.6646207/94‑1 (MQ=60)
ACTGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTG > SRR4302547.4911330/1‑94 (MQ=60)
TGCACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGAC > SRR4302547.4612431/1‑94 (MQ=60)
CACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCT < SRR4302547.2468741/94‑1 (MQ=60)
CACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCT < SRR4302547.2299750/94‑1 (MQ=60)
ACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTT > SRR4302547.6382528/1‑94 (MQ=60)
ACCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTT > SRR4302547.6289154/1‑94 (MQ=60)
CCGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTT < SRR4302547.6514711/94‑1 (MQ=60)
CGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTG < SRR4302547.4733588/94‑1 (MQ=60)
CGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTG < SRR4302547.4057137/94‑1 (MQ=60)
CGCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTG < SRR4302547.3940630/94‑1 (MQ=60)
GCATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGC > SRR4302547.1823263/1‑94 (MQ=60)
ATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTT > SRR4302547.4052986/1‑94 (MQ=60)
ATGGTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTT > SRR4302547.2351283/1‑94 (MQ=60)
GTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAG < SRR4302547.4849138/94‑1 (MQ=60)
GTCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAG < SRR4302547.1353174/94‑1 (MQ=60)
TCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGC < SRR4302547.1520438/94‑1 (MQ=60)
TCAATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGC < SRR4302547.6055613/94‑1 (MQ=60)
ATAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAA < SRR4302547.1126426/94‑1 (MQ=60)
TAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAA < SRR4302547.5223650/94‑1 (MQ=60)
TAGCCCGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAA < SRR4302547.4636238/94‑1 (MQ=60)
CGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCAT > SRR4302547.6027662/1‑94 (MQ=60)
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TGTCAGTGGCTTACCCATAGTAAGGACAAAGTGCATCCCTATGGCCAGACTCGGTTCATCACGACTCAACTGCACCGCATGGTCAATAGCCTGCCCATTCACCAGCGCCGTCGTCGACGTGACAATCCCATTGCGACAGGCCTCGATAATGCCGTAGTTCTGACCTTTGCTTAAGCCAAAATCAT > NC_000913/1814947‑1815131
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 0 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
